RNA–Protein interactions for RNA: ENST00000477739.1

CMC1-209, Transcript of C-X9-C motif containing 1, humanhuman

TSL 1 (best)

Gene CMC1, Length 3,749 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMC1-209ENST00000477739 CCDC146Q8IYE0 955 aa12.97□□□□□ -0.33
CMC1-209ENST00000477739 ZBED9Q6R2W3 1325 aa12.96□□□□□ -0.33
CMC1-209ENST00000477739 KIF14Q15058 1648 aa12.96□□□□□ -0.34
CMC1-209ENST00000477739 KDM5BQ9UGL1 1544 aa12.96□□□□□ -0.34
CMC1-209ENST00000477739 IL27Q8NEV9 243 aa12.95□□□□□ -0.34
CMC1-209ENST00000477739 RCAN3Q9UKA8 241 aa12.95□□□□□ -0.34
CMC1-209ENST00000477739 ROCK2O75116 1388 aaKnown RBP12.95□□□□□ -0.34
CMC1-209ENST00000477739 NUP160Q12769 1436 aa12.95□□□□□ -0.34
CMC1-209ENST00000477739 PZPP20742 1482 aa12.94□□□□□ -0.34
CMC1-209ENST00000477739 FANCIQ9NVI1 1328 aa12.94□□□□□ -0.34
CMC1-209ENST00000477739 NBPF1Q3BBV0 1214 aa12.94□□□□□ -0.34
CMC1-209ENST00000477739 SPRYD3Q8NCJ5 442 aa12.94□□□□□ -0.34
CMC1-209ENST00000477739 RSPH4AQ5TD94 716 aa12.93□□□□□ -0.34
CMC1-209ENST00000477739 TEX14Q8IWB6 1497 aa12.93□□□□□ -0.34
CMC1-209ENST00000477739 IPO9Q96P70 1041 aaKnown RBP12.91□□□□□ -0.34
CMC1-209ENST00000477739 WDR43Q15061 677 aaKnown RBP eCLIP12.9□□□□□ -0.34
CMC1-209ENST00000477739 CCDC144AA2RUR9 1427 aa12.9□□□□□ -0.34
CMC1-209ENST00000477739 FRAT1Q92837 279 aaPredicted RBP12.9□□□□□ -0.34
CMC1-209ENST00000477739 CRBNQ96SW2 442 aa12.9□□□□□ -0.34
CMC1-209ENST00000477739 EFCAB2Q5VUJ9 269 aa12.89□□□□□ -0.35
CMC1-209ENST00000477739 ITSN2Q9NZM3 1697 aa12.89□□□□□ -0.35
CMC1-209ENST00000477739 ANO8Q9HCE9 1232 aaPredicted RBP12.89□□□□□ -0.35
CMC1-209ENST00000477739 ARHGAP5Q13017 1502 aa12.87□□□□□ -0.35
CMC1-209ENST00000477739 PDE4AP27815 886 aa12.87□□□□□ -0.35
CMC1-209ENST00000477739 PANK3Q9H999 370 aa12.87□□□□□ -0.35
CMC1-209ENST00000477739 C20orf194Q5TEA3 1177 aa12.87□□□□□ -0.35
CMC1-209ENST00000477739 RRP1P56182 461 aaKnown RBP12.86□□□□□ -0.35
CMC1-209ENST00000477739 BCL2L13Q9BXK5 485 aa12.86□□□□□ -0.35
CMC1-209ENST00000477739 SAFB2Q14151 953 aaKnown RBP eCLIP12.86□□□□□ -0.35
CMC1-209ENST00000477739 NUTM2DQ5VT03 806 aaPredicted RBP12.86□□□□□ -0.35
CMC1-209ENST00000477739 PNISRQ8TF01 805 aaKnown RBP12.85□□□□□ -0.35
CMC1-209ENST00000477739 RRP7AQ9Y3A4 280 aaKnown RBP12.85□□□□□ -0.35
CMC1-209ENST00000477739 ADGRL2O95490 1459 aa12.85□□□□□ -0.35
CMC1-209ENST00000477739 SPATA31E1Q6ZUB1 1445 aa12.85□□□□□ -0.35
CMC1-209ENST00000477739 CCDC141Q6ZP82 1450 aa12.85□□□□□ -0.35
CMC1-209ENST00000477739 AFAP1Q8N556 730 aa12.83□□□□□ -0.36
CMC1-209ENST00000477739 SLKQ9H2G2 1235 aaPredicted RBP12.83□□□□□ -0.36
CMC1-209ENST00000477739 ABCC10Q5T3U5 1492 aa12.83□□□□□ -0.36
CMC1-209ENST00000477739 CLUAP1Q96AJ1 413 aa12.83□□□□□ -0.36
CMC1-209ENST00000477739 SPAG9O60271 1321 aaKnown RBP12.83□□□□□ -0.36
CMC1-209ENST00000477739 KNSTRNQ9Y448 316 aa12.82□□□□□ -0.36
CMC1-209ENST00000477739 ARID4BQ4LE39 1312 aaPredicted RBP12.82□□□□□ -0.36
CMC1-209ENST00000477739 ABCA8O94911 1581 aa12.82□□□□□ -0.36
CMC1-209ENST00000477739 RALBP1Q15311 655 aa12.82□□□□□ -0.36
CMC1-209ENST00000477739 TMF1P82094 1093 aa12.81□□□□□ -0.36
CMC1-209ENST00000477739 MYBBP1AQ9BQG0 1328 aaKnown RBP12.8□□□□□ -0.36
CMC1-209ENST00000477739 KTN1Q86UP2 1357 aaKnown RBP12.8□□□□□ -0.36
CMC1-209ENST00000477739 ERICH6BQ5W0A0 696 aa12.79□□□□□ -0.36
CMC1-209ENST00000477739 BRPF3Q9ULD4 1205 aa12.79□□□□□ -0.36
CMC1-209ENST00000477739 PLPPR3Q6T4P5 718 aa12.79□□□□□ -0.36
CMC1-209ENST00000477739 KIF3BO15066 747 aa12.79□□□□□ -0.36
CMC1-209ENST00000477739 ADAMTS8Q9UP79 889 aa12.79□□□□□ -0.36
CMC1-209ENST00000477739 PLEKHH2Q8IVE3 1493 aa12.78□□□□□ -0.36
CMC1-209ENST00000477739 SHANK2Q9UPX8 1470 aa12.78□□□□□ -0.36
CMC1-209ENST00000477739 DHX29Q7Z478 1369 aaKnown RBP12.78□□□□□ -0.36
CMC1-209ENST00000477739 SYCP2Q9BX26 1530 aa12.78□□□□□ -0.36
CMC1-209ENST00000477739 NLRP13Q86W25 1043 aa12.78□□□□□ -0.36
CMC1-209ENST00000477739 ADGBQ8N7X0 1667 aa12.78□□□□□ -0.36
CMC1-209ENST00000477739 MBD5Q9P267 1494 aa12.78□□□□□ -0.36
CMC1-209ENST00000477739 NPM1P06748 294 aaKnown RBP eCLIP12.77□□□□□ -0.36
CMC1-209ENST00000477739 RALGAPBQ86X10 1494 aa12.76□□□□□ -0.37
CMC1-209ENST00000477739 GZF1Q9H116 711 aaPredicted RBP12.76□□□□□ -0.37
CMC1-209ENST00000477739 CDC42BPAQ5VT25 1732 aa12.75□□□□□ -0.37
CMC1-209ENST00000477739 FAM135AQ9P2D6 1515 aa12.75□□□□□ -0.37
CMC1-209ENST00000477739 APAF1O14727 1248 aa12.75□□□□□ -0.37
CMC1-209ENST00000477739 ADCY10Q96PN6 1610 aa12.74□□□□□ -0.37
CMC1-209ENST00000477739 PPM1GO15355 546 aaPredicted RBP12.74□□□□□ -0.37
CMC1-209ENST00000477739 UHRF1BP1Q6BDS2 1440 aa12.73□□□□□ -0.37
CMC1-209ENST00000477739 BCAR3O75815 825 aa12.72□□□□□ -0.37
CMC1-209ENST00000477739 COG6Q9Y2V7 657 aa12.72□□□□□ -0.37
CMC1-209ENST00000477739 SAMD9LQ8IVG5 1584 aa12.71□□□□□ -0.37
CMC1-209ENST00000477739 BRD4O60885 1362 aaPredicted RBP12.71□□□□□ -0.37
CMC1-209ENST00000477739 KANK1Q14678 1352 aa12.71□□□□□ -0.37
CMC1-209ENST00000477739 TCERG1O14776 1098 aaKnown RBP12.7□□□□□ -0.38
CMC1-209ENST00000477739 PRAG1Q86YV5 1406 aa12.7□□□□□ -0.38
CMC1-209ENST00000477739 GGT6Q6P531 493 aa12.7□□□□□ -0.38
CMC1-209ENST00000477739 PANK1Q8TE04 598 aa12.7□□□□□ -0.38
CMC1-209ENST00000477739 ERCC6L2Q5T890 1561 aa12.69□□□□□ -0.38
CMC1-209ENST00000477739 CDCA8Q53HL2 280 aa12.69□□□□□ -0.38
CMC1-209ENST00000477739 ARHGEF12Q9NZN5 1544 aa12.69□□□□□ -0.38
CMC1-209ENST00000477739 CROCC2H7BZ55 1655 aa12.69□□□□□ -0.38
CMC1-209ENST00000477739 SMG6Q86US8 1419 aaKnown RBP12.69□□□□□ -0.38
CMC1-209ENST00000477739 BCORL1Q5H9F3 1711 aa12.69□□□□□ -0.38
CMC1-209ENST00000477739 TRAPPC8Q9Y2L5 1435 aa12.69□□□□□ -0.38
CMC1-209ENST00000477739 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.68□□□□□ -0.382e-9■□□□□ 11.3
CMC1-209ENST00000477739 PLEKHG5O94827 1062 aa12.68□□□□□ -0.38
CMC1-209ENST00000477739 TPRNQ4KMQ1 711 aa12.68□□□□□ -0.38
CMC1-209ENST00000477739 DISP3Q9P2K9 1392 aa12.68□□□□□ -0.38
CMC1-209ENST00000477739 FRAT2O75474 233 aaPredicted RBP12.68□□□□□ -0.38
CMC1-209ENST00000477739 KDM5CP41229 1560 aa12.68□□□□□ -0.38
CMC1-209ENST00000477739 ARHGEF5Q12774 1597 aa12.68□□□□□ -0.38
CMC1-209ENST00000477739 PLCH2O75038 1416 aa12.68□□□□□ -0.38
CMC1-209ENST00000477739 ABCC2Q92887 1545 aa12.67□□□□□ -0.38
CMC1-209ENST00000477739 TTC37Q6PGP7 1564 aa12.67□□□□□ -0.38
CMC1-209ENST00000477739 BACH2Q9BYV9 841 aa12.67□□□□□ -0.38
CMC1-209ENST00000477739 SCAPERQ9BY12 1400 aa12.67□□□□□ -0.38
CMC1-209ENST00000477739 U2SURPO15042 1029 aaKnown RBP12.66□□□□□ -0.38
CMC1-209ENST00000477739 TESK2Q96S53 571 aa12.66□□□□□ -0.38
CMC1-209ENST00000477739 FOXD4L1Q9NU39 408 aa12.66□□□□□ -0.38
CMC1-209ENST00000477739 STK26Q9P289 416 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms