RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 KCNH8Q96L42 1107 aa11.38□□□□□ -0.59
VMA21-203ENST00000477649 SIN3AQ96ST3 1273 aa11.38□□□□□ -0.59
VMA21-203ENST00000477649 SLC4A1APQ9BWU0 796 aaKnown RBP11.38□□□□□ -0.59
VMA21-203ENST00000477649 ABCA9Q8IUA7 1624 aa11.38□□□□□ -0.59
VMA21-203ENST00000477649 PLXNC1O60486 1568 aa11.37□□□□□ -0.59
VMA21-203ENST00000477649 SYCP2Q9BX26 1530 aa11.37□□□□□ -0.59
VMA21-203ENST00000477649 KDM6BO15054 1643 aa11.37□□□□□ -0.59
VMA21-203ENST00000477649 ANKRD30BQ9BXX2 1392 aa11.37□□□□□ -0.59
VMA21-203ENST00000477649 ASXL2Q76L83 1435 aa11.36□□□□□ -0.59
VMA21-203ENST00000477649 ABCC1P33527 1531 aa11.36□□□□□ -0.59
VMA21-203ENST00000477649 CYB5RLQ6IPT4 315 aa11.36□□□□□ -0.59
VMA21-203ENST00000477649 ZBTB12Q9Y330 459 aaPredicted RBP11.35□□□□□ -0.59
VMA21-203ENST00000477649 DENND4BO75064 1496 aaPredicted RBP11.35□□□□□ -0.59
VMA21-203ENST00000477649 PZPP20742 1482 aa11.35□□□□□ -0.59
VMA21-203ENST00000477649 RPRD2Q5VT52 1461 aaKnown RBP11.35□□□□□ -0.59
VMA21-203ENST00000477649 DUOX2Q9NRD8 1548 aa11.35□□□□□ -0.59
VMA21-203ENST00000477649 ERBINQ96RT1 1412 aa11.35□□□□□ -0.59
VMA21-203ENST00000477649 CFAP74Q9C0B2 1584 aa11.33□□□□□ -0.6
VMA21-203ENST00000477649 FANCAO15360 1455 aa11.32□□□□□ -0.6
VMA21-203ENST00000477649 NUP155O75694 1391 aa11.32□□□□□ -0.6
VMA21-203ENST00000477649 GABBR2O75899 941 aa11.31□□□□□ -0.6
VMA21-203ENST00000477649 SPAG9O60271 1321 aaKnown RBP11.31□□□□□ -0.6
VMA21-203ENST00000477649 ARHGEF12Q9NZN5 1544 aa11.3□□□□□ -0.6
VMA21-203ENST00000477649 UNC13BO14795 1591 aa11.29□□□□□ -0.6
VMA21-203ENST00000477649 MAGI2Q86UL8 1455 aa11.28□□□□□ -0.6
VMA21-203ENST00000477649 PKD2Q13563 968 aa11.28□□□□□ -0.6
VMA21-203ENST00000477649 CD109Q6YHK3 1445 aa11.27□□□□□ -0.6
VMA21-203ENST00000477649 TRAPPC8Q9Y2L5 1435 aa11.27□□□□□ -0.6
VMA21-203ENST00000477649 ADGRL1O94910 1474 aa11.27□□□□□ -0.6
VMA21-203ENST00000477649 C19orf67A6NJJ6 358 aa11.27□□□□□ -0.61
VMA21-203ENST00000477649 MYCNP04198 464 aaPredicted RBP11.27□□□□□ -0.61
VMA21-203ENST00000477649 ZNF518AQ6AHZ1 1483 aa11.26□□□□□ -0.61
VMA21-203ENST00000477649 NEO1Q92859 1461 aa11.26□□□□□ -0.61
VMA21-203ENST00000477649 FAM135AQ9P2D6 1515 aa11.26□□□□□ -0.61
VMA21-203ENST00000477649 SCAPERQ9BY12 1400 aa11.26□□□□□ -0.61
VMA21-203ENST00000477649 ZFYVE16Q7Z3T8 1539 aa11.25□□□□□ -0.61
VMA21-203ENST00000477649 ATP10AO60312 1499 aa11.25□□□□□ -0.61
VMA21-203ENST00000477649 TEX14Q8IWB6 1497 aa11.25□□□□□ -0.61
VMA21-203ENST00000477649 IQGAP3Q86VI3 1631 aa11.24□□□□□ -0.61
VMA21-203ENST00000477649 L3MBTL2Q969R5 705 aa11.24□□□□□ -0.61
VMA21-203ENST00000477649 ATP7AQ04656 1500 aa11.24□□□□□ -0.61
VMA21-203ENST00000477649 GLI2P10070 1586 aa11.24□□□□□ -0.61
VMA21-203ENST00000477649 INO80Q9ULG1 1556 aaPredicted RBP11.24□□□□□ -0.61
VMA21-203ENST00000477649 KANK1Q14678 1352 aa11.22□□□□□ -0.61
VMA21-203ENST00000477649 DHX29Q7Z478 1369 aaKnown RBP11.22□□□□□ -0.61
VMA21-203ENST00000477649 EIF2AK4Q9P2K8 1649 aaKnown RBP11.22□□□□□ -0.61
VMA21-203ENST00000477649 MLH3Q9UHC1 1453 aa11.22□□□□□ -0.61
VMA21-203ENST00000477649 AFAP1Q8N556 730 aa11.21□□□□□ -0.61
VMA21-203ENST00000477649 STAC3Q96MF2 364 aa11.21□□□□□ -0.61
VMA21-203ENST00000477649 UHRF1BP1Q6BDS2 1440 aa11.2□□□□□ -0.62
VMA21-203ENST00000477649 POGZQ7Z3K3 1410 aa11.2□□□□□ -0.62
VMA21-203ENST00000477649 EIF4G2P78344 907 aaKnown RBP eCLIP11.2□□□□□ -0.62
VMA21-203ENST00000477649 KDM5CP41229 1560 aa11.2□□□□□ -0.62
VMA21-203ENST00000477649 CCDC144AA2RUR9 1427 aa11.19□□□□□ -0.62
VMA21-203ENST00000477649 DEPDC5O75140 1603 aa11.19□□□□□ -0.62
VMA21-203ENST00000477649 PRKAR2AP13861 404 aaKnown RBP11.18□□□□□ -0.62
VMA21-203ENST00000477649 VWDEQ8N2E2 1590 aa11.16□□□□□ -0.62
VMA21-203ENST00000477649 CENPBP07199 599 aaPredicted RBP11.16□□□□□ -0.62
VMA21-203ENST00000477649 MAP3K4Q9Y6R4 1608 aa11.16□□□□□ -0.62
VMA21-203ENST00000477649 PRDM15P57071 1507 aaPredicted RBP11.15□□□□□ -0.62
VMA21-203ENST00000477649 A2MP01023 1474 aa11.15□□□□□ -0.62
VMA21-203ENST00000477649 MIER1Q8N108 512 aa11.15□□□□□ -0.62
VMA21-203ENST00000477649 MYT1LQ9UL68 1186 aa11.15□□□□□ -0.62
VMA21-203ENST00000477649 HECW2Q9P2P5 1572 aa11.15□□□□□ -0.62
VMA21-203ENST00000477649 ARID4BQ4LE39 1312 aaPredicted RBP11.14□□□□□ -0.63
VMA21-203ENST00000477649 KCNA4P22459 653 aa11.14□□□□□ -0.63
VMA21-203ENST00000477649 PTPRTO14522 1441 aa11.14□□□□□ -0.63
VMA21-203ENST00000477649 NEURL4Q96JN8 1562 aa11.14□□□□□ -0.63
VMA21-203ENST00000477649 LMTK2Q8IWU2 1503 aa11.14□□□□□ -0.63
VMA21-203ENST00000477649 TET3O43151 1660 aa11.14□□□□□ -0.63
VMA21-203ENST00000477649 RALGAPBQ86X10 1494 aa11.13□□□□□ -0.63
VMA21-203ENST00000477649 KIDINS220Q9ULH0 1771 aa11.13□□□□□ -0.63
VMA21-203ENST00000477649 PLA2R1Q13018 1463 aa11.12□□□□□ -0.63
VMA21-203ENST00000477649 BCORL1Q5H9F3 1711 aa11.12□□□□□ -0.63
VMA21-203ENST00000477649 KIF3BO15066 747 aa11.12□□□□□ -0.63
VMA21-203ENST00000477649 HSPA5P11021 654 aaKnown RBP11.12□□□□□ -0.63
VMA21-203ENST00000477649 NBPF8Q3BBV2 869 aa11.12□□□□□ -0.63
VMA21-203ENST00000477649 TRPM2O94759 1503 aa11.12□□□□□ -0.63
VMA21-203ENST00000477649 RNF17Q9BXT8 1623 aaKnown RBP11.12□□□□□ -0.63
VMA21-203ENST00000477649 SPATA31E1Q6ZUB1 1445 aa11.11□□□□□ -0.63
VMA21-203ENST00000477649 DIP2BQ9P265 1576 aa11.1□□□□□ -0.63
VMA21-203ENST00000477649 POTEIP0CG38 1075 aa11.09□□□□□ -0.63
VMA21-203ENST00000477649 ATF5Q9Y2D1 282 aaPredicted RBP11.09□□□□□ -0.63
VMA21-203ENST00000477649 ZMYM4Q5VZL5 1548 aa11.09□□□□□ -0.63
VMA21-203ENST00000477649 CCER2I3L3R5 266 aa11.08□□□□□ -0.64
VMA21-203ENST00000477649 ANP32CO43423 234 aa11.08□□□□□ -0.64
VMA21-203ENST00000477649 FAM69CQ0P6D2 419 aa11.08□□□□□ -0.64
VMA21-203ENST00000477649 DDX10Q13206 875 aaKnown RBP11.08□□□□□ -0.64
VMA21-203ENST00000477649 DCAF11Q8TEB1 546 aa11.08□□□□□ -0.64
VMA21-203ENST00000477649 MROH1Q8NDA8 1641 aa11.07□□□□□ -0.64
VMA21-203ENST00000477649 EFCAB6Q5THR3 1501 aa11.07□□□□□ -0.64
VMA21-203ENST00000477649 PRAG1Q86YV5 1406 aa11.07□□□□□ -0.64
VMA21-203ENST00000477649 ROCK2O75116 1388 aaKnown RBP11.06□□□□□ -0.64
VMA21-203ENST00000477649 GPRASP1Q5JY77 1395 aa11.06□□□□□ -0.64
VMA21-203ENST00000477649 USP47Q96K76 1375 aa11.06□□□□□ -0.64
VMA21-203ENST00000477649 E9PCH4 1651 aa11.06□□□□□ -0.64
VMA21-203ENST00000477649 RICTORQ6R327 1708 aa11.06□□□□□ -0.64
VMA21-203ENST00000477649 LAMC1P11047 1609 aa11.06□□□□□ -0.64
VMA21-203ENST00000477649 CCDC7Q96M83 1385 aa11.05□□□□□ -0.64
VMA21-203ENST00000477649 SLC24A1O60721 1099 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms