RNA–Protein interactions for RNA: ENST00000477649.1

VMA21-203, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

TSL 3

Gene VMA21, Length 485 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-203ENST00000477649 AEBP2Q6ZN18 517 aaPredicted RBP21.37■■□□□ 1.01
VMA21-203ENST00000477649 CHIC1Q5VXU3 224 aa19.92■□□□□ 0.78
VMA21-203ENST00000477649 SENP3Q9H4L4 574 aaPredicted RBP18.34■□□□□ 0.53
VMA21-203ENST00000477649 PHF23Q9BUL5 403 aaPredicted RBP17.98■□□□□ 0.47
VMA21-203ENST00000477649 NISCHQ9Y2I1 1504 aa17.61■□□□□ 0.41
VMA21-203ENST00000477649 POTEDQ86YR6 584 aa17.57■□□□□ 0.4
VMA21-203ENST00000477649 FOXD1Q16676 465 aa17.22■□□□□ 0.35
VMA21-203ENST00000477649 MSH5O43196 834 aa16.44■□□□□ 0.22
VMA21-203ENST00000477649 PIAS4Q8N2W9 510 aaPredicted RBP15.84■□□□□ 0.13
VMA21-203ENST00000477649 PPP6R1Q9UPN7 881 aa15.43■□□□□ 0.06
VMA21-203ENST00000477649 CCDC180Q9P1Z9 1646 aa15.34■□□□□ 0.05
VMA21-203ENST00000477649 ADRA2BP18089 450 aa15.3■□□□□ 0.04
VMA21-203ENST00000477649 PLPPR3Q6T4P5 718 aa15.1■□□□□ 0.01
VMA21-203ENST00000477649 ZCCHC6Q5VYS8 1495 aaKnown RBP14.82□□□□□ -0.04
VMA21-203ENST00000477649 DCAF1Q9Y4B6 1507 aa14.68□□□□□ -0.06
VMA21-203ENST00000477649 CACNB1Q02641 598 aaPredicted RBP14.62□□□□□ -0.07
VMA21-203ENST00000477649 MYO15BQ96JP2 1530 aa14.5□□□□□ -0.09
VMA21-203ENST00000477649 DMRT2Q9Y5R5 561 aa14.42□□□□□ -0.1
VMA21-203ENST00000477649 DCAF8L2P0C7V8 631 aa14.38□□□□□ -0.11
VMA21-203ENST00000477649 MAPK8IP2Q13387 824 aaPredicted RBP14.32□□□□□ -0.12
VMA21-203ENST00000477649 NACADO15069 1562 aa14.29□□□□□ -0.12
VMA21-203ENST00000477649 SHROOM4Q9ULL8 1493 aa14.26□□□□□ -0.13
VMA21-203ENST00000477649 ABCC9O60706 1549 aa14.25□□□□□ -0.13
VMA21-203ENST00000477649 RB1CC1Q8TDY2 1594 aa14.1□□□□□ -0.15
VMA21-203ENST00000477649 SCAF1Q9H7N4 1312 aaKnown RBP13.98□□□□□ -0.17
VMA21-203ENST00000477649 SCRIBQ14160 1630 aa13.97□□□□□ -0.17
VMA21-203ENST00000477649 RNF39Q9H2S5 420 aa13.96□□□□□ -0.17
VMA21-203ENST00000477649 SUPT5HO00267 1087 aaKnown RBP13.85□□□□□ -0.19
VMA21-203ENST00000477649 DCAF8L1A6NGE4 600 aa13.79□□□□□ -0.2
VMA21-203ENST00000477649 C1QBPQ07021 282 aaKnown RBP13.7□□□□□ -0.22
VMA21-203ENST00000477649 RSF1Q96T23 1441 aaPredicted RBP13.69□□□□□ -0.22
VMA21-203ENST00000477649 UNC13AQ9UPW8 1703 aa13.64□□□□□ -0.23
VMA21-203ENST00000477649 BAZ1AQ9NRL2 1556 aaPredicted RBP13.62□□□□□ -0.23
VMA21-203ENST00000477649 POTEHQ6S545 545 aa13.58□□□□□ -0.24
VMA21-203ENST00000477649 CECR2Q9BXF3 1484 aa13.57□□□□□ -0.24
VMA21-203ENST00000477649 BICRAQ9NZM4 1560 aa13.57□□□□□ -0.24
VMA21-203ENST00000477649 HOXD11P31277 338 aaPredicted RBP13.56□□□□□ -0.24
VMA21-203ENST00000477649 DNAJC5BQ9UF47 199 aa13.56□□□□□ -0.24
VMA21-203ENST00000477649 MROH2BQ7Z745 1585 aa13.54□□□□□ -0.24
VMA21-203ENST00000477649 SMARCA4P51532 1647 aa13.48□□□□□ -0.25
VMA21-203ENST00000477649 PABPN1Q86U42 306 aaKnown RBP eCLIP13.43□□□□□ -0.26
VMA21-203ENST00000477649 PEG3Q9GZU2 1588 aa13.39□□□□□ -0.27
VMA21-203ENST00000477649 WIZO95785 1651 aa13.39□□□□□ -0.27
VMA21-203ENST00000477649 TOP2AP11388 1531 aaKnown RBP13.38□□□□□ -0.27
VMA21-203ENST00000477649 SMARCA2P51531 1590 aa13.31□□□□□ -0.28
VMA21-203ENST00000477649 ATAD2BQ9ULI0 1458 aa13.26□□□□□ -0.29
VMA21-203ENST00000477649 RNF216Q9NWF9 866 aaPredicted RBP13.2□□□□□ -0.3
VMA21-203ENST00000477649 CCDC88BA6NC98 1476 aa13.2□□□□□ -0.3
VMA21-203ENST00000477649 BAZ1BQ9UIG0 1483 aaKnown RBP13.19□□□□□ -0.3
VMA21-203ENST00000477649 EIF4G1Q04637 1599 aaKnown RBP13.19□□□□□ -0.3
VMA21-203ENST00000477649 NCAPD3P42695 1498 aa13.18□□□□□ -0.3
VMA21-203ENST00000477649 HMGXB3Q12766 1538 aa13.17□□□□□ -0.3
VMA21-203ENST00000477649 TRIM41Q8WV44 630 aa13.12□□□□□ -0.31
VMA21-203ENST00000477649 PPP4R3CPQ6ZMV5 832 aa13.11□□□□□ -0.31
VMA21-203ENST00000477649 CNKSR2Q8WXI2 1034 aa13.08□□□□□ -0.32
VMA21-203ENST00000477649 CC2D2AQ9P2K1 1620 aa12.93□□□□□ -0.34
VMA21-203ENST00000477649 EEA1Q15075 1411 aa12.92□□□□□ -0.34
VMA21-203ENST00000477649 WRNQ14191 1432 aaPredicted RBP eCLIP12.91□□□□□ -0.34
VMA21-203ENST00000477649 CFTRP13569 1480 aa12.89□□□□□ -0.35
VMA21-203ENST00000477649 ABCC8Q09428 1581 aa12.86□□□□□ -0.35
VMA21-203ENST00000477649 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.85□□□□□ -0.35
VMA21-203ENST00000477649 CADPSQ9ULU8 1353 aa12.83□□□□□ -0.36
VMA21-203ENST00000477649 LOC105371045A0A1W2PR82 267 aa12.78□□□□□ -0.36
VMA21-203ENST00000477649 DSG3P32926 999 aa12.78□□□□□ -0.36
VMA21-203ENST00000477649 TOP2BQ02880 1626 aa12.77□□□□□ -0.36
VMA21-203ENST00000477649 PRDM2Q13029 1718 aa12.77□□□□□ -0.36
VMA21-203ENST00000477649 SYNJ1O43426 1573 aa12.76□□□□□ -0.37
VMA21-203ENST00000477649 BIVM-ERCC5R4GMW8 1640 aa12.75□□□□□ -0.37
VMA21-203ENST00000477649 FAM9AQ8IZU1 332 aaPredicted RBP12.73□□□□□ -0.37
VMA21-203ENST00000477649 CSRNP3Q8WYN3 585 aa12.72□□□□□ -0.37
VMA21-203ENST00000477649 LAMC3Q9Y6N6 1575 aa12.69□□□□□ -0.38
VMA21-203ENST00000477649 SOGA1O94964 1423 aa12.69□□□□□ -0.38
VMA21-203ENST00000477649 CUX1P39880 1505 aa12.66□□□□□ -0.38
VMA21-203ENST00000477649 TNIKQ9UKE5 1360 aa12.65□□□□□ -0.38
VMA21-203ENST00000477649 FANCD2Q9BXW9 1451 aa12.65□□□□□ -0.38
VMA21-203ENST00000477649 CEP164Q9UPV0 1460 aa12.65□□□□□ -0.38
VMA21-203ENST00000477649 GOLGA3Q08378 1498 aa12.64□□□□□ -0.39
VMA21-203ENST00000477649 KIF21BO75037 1637 aa12.63□□□□□ -0.39
VMA21-203ENST00000477649 PDS5BQ9NTI5 1447 aa12.62□□□□□ -0.39
VMA21-203ENST00000477649 KIF27Q86VH2 1401 aa12.62□□□□□ -0.39
VMA21-203ENST00000477649 SPINK5Q9NQ38 1064 aaPredicted RBP12.6□□□□□ -0.39
VMA21-203ENST00000477649 RUSC2Q8N2Y8 1516 aa12.58□□□□□ -0.4
VMA21-203ENST00000477649 CAPN15O75808 1086 aa12.58□□□□□ -0.4
VMA21-203ENST00000477649 DNMBPQ6XZF7 1577 aa12.57□□□□□ -0.4
VMA21-203ENST00000477649 ERICH3Q5RHP9 1530 aa12.56□□□□□ -0.4
VMA21-203ENST00000477649 PRXQ9BXM0 1461 aa12.53□□□□□ -0.4
VMA21-203ENST00000477649 UBTFP17480 764 aaKnown RBP12.53□□□□□ -0.4
VMA21-203ENST00000477649 U3KPZ7 1027 aaPredicted RBP12.53□□□□□ -0.4
VMA21-203ENST00000477649 FGD5Q6ZNL6 1462 aa12.53□□□□□ -0.4
VMA21-203ENST00000477649 CEP162Q5TB80 1403 aa12.52□□□□□ -0.41
VMA21-203ENST00000477649 TOPBP1Q92547 1522 aa12.52□□□□□ -0.41
VMA21-203ENST00000477649 NESP48681 1621 aa12.51□□□□□ -0.41
VMA21-203ENST00000477649 DNAJC5Q9H3Z4 198 aa12.5□□□□□ -0.41
VMA21-203ENST00000477649 ABCA10Q8WWZ4 1543 aa12.48□□□□□ -0.41
VMA21-203ENST00000477649 CUX2O14529 1486 aa12.48□□□□□ -0.41
VMA21-203ENST00000477649 TRIM26Q12899 539 aaPredicted RBP12.47□□□□□ -0.41
VMA21-203ENST00000477649 POLA1P09884 1462 aaPredicted RBP12.46□□□□□ -0.42
VMA21-203ENST00000477649 RAPGEF2Q9Y4G8 1499 aa12.46□□□□□ -0.42
VMA21-203ENST00000477649 IGF1RP08069 1367 aa12.44□□□□□ -0.42
VMA21-203ENST00000477649 EHMT2Q96KQ7 1210 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms