RNA–Protein interactions for RNA: ENST00000477152.5

BRCA1-214, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,980 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-214ENST00000477152 CHADLQ6NUI6 762 aa11.76□□□□□ -0.53
BRCA1-214ENST00000477152 C9orf84Q5VXU9 1444 aa11.76□□□□□ -0.53
BRCA1-214ENST00000477152 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.76□□□□□ -0.53
BRCA1-214ENST00000477152 MLECQ14165 292 aa11.74□□□□□ -0.53
BRCA1-214ENST00000477152 YEATS2Q9ULM3 1422 aa11.74□□□□□ -0.53
BRCA1-214ENST00000477152 ESF1Q9H501 851 aaKnown RBP11.74□□□□□ -0.53
BRCA1-214ENST00000477152 LMTK3Q96Q04 1460 aa11.73□□□□□ -0.53
BRCA1-214ENST00000477152 CASKIN1Q8WXD9 1431 aa11.72□□□□□ -0.53
BRCA1-214ENST00000477152 FAM212AQ96EL1 285 aa11.71□□□□□ -0.53
BRCA1-214ENST00000477152 ARHGEF12Q9NZN5 1544 aa11.7□□□□□ -0.54
BRCA1-214ENST00000477152 PREX1Q8TCU6 1659 aa11.7□□□□□ -0.54
BRCA1-214ENST00000477152 KDM5CP41229 1560 aa11.7□□□□□ -0.54
BRCA1-214ENST00000477152 PREX2Q70Z35 1606 aa11.7□□□□□ -0.54
BRCA1-214ENST00000477152 SETD1BQ9UPS6 1966 aaKnown RBP11.69□□□□□ -0.54
BRCA1-214ENST00000477152 FYCO1Q9BQS8 1478 aa11.69□□□□□ -0.54
BRCA1-214ENST00000477152 REREQ9P2R6 1566 aa11.69□□□□□ -0.54
BRCA1-214ENST00000477152 CDC42BPBQ9Y5S2 1711 aa11.69□□□□□ -0.54
BRCA1-214ENST00000477152 LRRIQ1Q96JM4 1722 aa11.69□□□□□ -0.54
BRCA1-214ENST00000477152 MLH3Q9UHC1 1453 aa11.68□□□□□ -0.54
BRCA1-214ENST00000477152 AFAP1Q8N556 730 aa11.67□□□□□ -0.54
BRCA1-214ENST00000477152 KDM2AQ9Y2K7 1162 aa11.67□□□□□ -0.54
BRCA1-214ENST00000477152 PYGBP11216 843 aa11.67□□□□□ -0.54
BRCA1-214ENST00000477152 SIGLEC1Q9BZZ2 1709 aa11.66□□□□□ -0.54
BRCA1-214ENST00000477152 ITSN2Q9NZM3 1697 aa11.66□□□□□ -0.54
BRCA1-214ENST00000477152 ABCC1P33527 1531 aa11.65□□□□□ -0.54
BRCA1-214ENST00000477152 SPRYD3Q8NCJ5 442 aa11.65□□□□□ -0.54
BRCA1-214ENST00000477152 UHRF1BP1Q6BDS2 1440 aa11.65□□□□□ -0.54
BRCA1-214ENST00000477152 DIP2CQ9Y2E4 1556 aa11.65□□□□□ -0.54
BRCA1-214ENST00000477152 AGLP35573 1532 aa11.65□□□□□ -0.54
BRCA1-214ENST00000477152 PLEKHH2Q8IVE3 1493 aa11.65□□□□□ -0.55
BRCA1-214ENST00000477152 RIOK3O14730 519 aaKnown RBP11.65□□□□□ -0.55
BRCA1-214ENST00000477152 HSPA2P54652 639 aa11.65□□□□□ -0.55
BRCA1-214ENST00000477152 CNTLNQ9NXG0 1405 aa11.64□□□□□ -0.55
BRCA1-214ENST00000477152 CDC42BPAQ5VT25 1732 aa11.64□□□□□ -0.55
BRCA1-214ENST00000477152 HS6ST3Q8IZP7 471 aa11.64□□□□□ -0.55
BRCA1-214ENST00000477152 TSHZ2Q9NRE2 1034 aa11.64□□□□□ -0.55
BRCA1-214ENST00000477152 ZNF777Q9ULD5 760 aaPredicted RBP11.62□□□□□ -0.55
BRCA1-214ENST00000477152 ABCA6Q8N139 1617 aa11.62□□□□□ -0.55
BRCA1-214ENST00000477152 NKX1-1Q15270 411 aaPredicted RBP11.61□□□□□ -0.55
BRCA1-214ENST00000477152 CERKQ8TCT0 537 aa11.61□□□□□ -0.55
BRCA1-214ENST00000477152 SPAG9O60271 1321 aaKnown RBP11.6□□□□□ -0.55
BRCA1-214ENST00000477152 MTUS2Q5JR59 1369 aa11.6□□□□□ -0.55
BRCA1-214ENST00000477152 CCNB3Q8WWL7 1395 aa11.6□□□□□ -0.55
BRCA1-214ENST00000477152 VSIG10Q8N0Z9 540 aa11.6□□□□□ -0.55
BRCA1-214ENST00000477152 TSPYL2Q9H2G4 693 aaPredicted RBP11.6□□□□□ -0.55
BRCA1-214ENST00000477152 CFDP1Q9UEE9 299 aaPredicted RBP11.6□□□□□ -0.55
BRCA1-214ENST00000477152 TRAPPC8Q9Y2L5 1435 aa11.6□□□□□ -0.55
BRCA1-214ENST00000477152 CEBPAP49715 358 aaPredicted RBP11.59□□□□□ -0.55
BRCA1-214ENST00000477152 KIDINS220Q9ULH0 1771 aa11.59□□□□□ -0.55
BRCA1-214ENST00000477152 C3P01024 1663 aa11.59□□□□□ -0.55
BRCA1-214ENST00000477152 FARP1Q9Y4F1 1045 aaPredicted RBP11.59□□□□□ -0.55
BRCA1-214ENST00000477152 KIAA1107Q9UPP5 1409 aa11.59□□□□□ -0.55
BRCA1-214ENST00000477152 MROH2AA6NES4 1674 aa11.58□□□□□ -0.56
BRCA1-214ENST00000477152 SAMD9LQ8IVG5 1584 aa11.58□□□□□ -0.56
BRCA1-214ENST00000477152 GPATCH8Q9UKJ3 1502 aaKnown RBP11.57□□□□□ -0.56
BRCA1-214ENST00000477152 STK25O00506 426 aa11.57□□□□□ -0.56
BRCA1-214ENST00000477152 PRKAR2AP13861 404 aaKnown RBP11.57□□□□□ -0.56
BRCA1-214ENST00000477152 CHRM1P11229 460 aaPredicted RBP11.56□□□□□ -0.56
BRCA1-214ENST00000477152 SYCP2Q9BX26 1530 aa11.56□□□□□ -0.56
BRCA1-214ENST00000477152 NPATQ14207 1427 aa11.56□□□□□ -0.56
BRCA1-214ENST00000477152 PTPRTO14522 1441 aa11.55□□□□□ -0.56
BRCA1-214ENST00000477152 SUPT6HQ7KZ85 1726 aaKnown RBP11.55□□□□□ -0.56
BRCA1-214ENST00000477152 ATP7AQ04656 1500 aa11.55□□□□□ -0.56
BRCA1-214ENST00000477152 HNRNPMP52272 730 aaKnown RBP eCLIP11.55□□□□□ -0.56
BRCA1-214ENST00000477152 EHBP1L1Q8N3D4 1523 aa11.55□□□□□ -0.56
BRCA1-214ENST00000477152 ADGBQ8N7X0 1667 aa11.54□□□□□ -0.56
BRCA1-214ENST00000477152 STRCQ7RTU9 1775 aa11.54□□□□□ -0.56
BRCA1-214ENST00000477152 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.54□□□□□ -0.56
BRCA1-214ENST00000477152 RSPH4AQ5TD94 716 aa11.54□□□□□ -0.56
BRCA1-214ENST00000477152 ZFP91Q96JP5 570 aaPredicted RBP11.54□□□□□ -0.56
BRCA1-214ENST00000477152 A2MP01023 1474 aa11.53□□□□□ -0.56
BRCA1-214ENST00000477152 VGFO15240 615 aaPredicted RBP11.52□□□□□ -0.56
BRCA1-214ENST00000477152 INO80Q9ULG1 1556 aaPredicted RBP11.52□□□□□ -0.57
BRCA1-214ENST00000477152 ZMYM3Q14202 1370 aa11.52□□□□□ -0.57
BRCA1-214ENST00000477152 FXR2P51116 673 aaKnown RBP eCLIP11.51□□□□□ -0.57
BRCA1-214ENST00000477152 BCL11BQ9C0K0 894 aaPredicted RBP11.51□□□□□ -0.57
BRCA1-214ENST00000477152 RTEL1-TNFRSF6BF6WH68 1400 aa11.5□□□□□ -0.57
BRCA1-214ENST00000477152 CLTCQ00610 1675 aaKnown RBP11.5□□□□□ -0.57
BRCA1-214ENST00000477152 GGT6Q6P531 493 aa11.5□□□□□ -0.57
BRCA1-214ENST00000477152 CEP162Q5TB80 1403 aa11.49□□□□□ -0.57
BRCA1-214ENST00000477152 STK24Q9Y6E0 443 aa11.49□□□□□ -0.57
BRCA1-214ENST00000477152 IQSEC2Q5JU85 1478 aa11.49□□□□□ -0.57
BRCA1-214ENST00000477152 PLXNC1O60486 1568 aa11.49□□□□□ -0.57
BRCA1-214ENST00000477152 TIAM1Q13009 1591 aa11.48□□□□□ -0.57
BRCA1-214ENST00000477152 GTPBP6O43824 516 aaPredicted RBP11.48□□□□□ -0.57
BRCA1-214ENST00000477152 NCOA1Q15788 1441 aa11.48□□□□□ -0.57
BRCA1-214ENST00000477152 CAMSAP1Q5T5Y3 1602 aa11.47□□□□□ -0.57
BRCA1-214ENST00000477152 CHRDL2Q6WN34 429 aa11.47□□□□□ -0.57
BRCA1-214ENST00000477152 FAM135AQ9P2D6 1515 aa11.47□□□□□ -0.57
BRCA1-214ENST00000477152 TSPY4P0CV99 314 aa11.47□□□□□ -0.57
BRCA1-214ENST00000477152 TSPY10P0CW01 314 aa11.47□□□□□ -0.57
BRCA1-214ENST00000477152 PCDHB8Q9UN66 801 aa11.47□□□□□ -0.57
BRCA1-214ENST00000477152 PCDHB13Q9Y5F0 798 aa11.47□□□□□ -0.57
BRCA1-214ENST00000477152 ZNF142P52746 1687 aaPredicted RBP11.46□□□□□ -0.57
BRCA1-214ENST00000477152 PIP4P2Q8N4L2 257 aa11.46□□□□□ -0.58
BRCA1-214ENST00000477152 TAOK2Q9UL54 1235 aa11.46□□□□□ -0.58
BRCA1-214ENST00000477152 DHX29Q7Z478 1369 aaKnown RBP11.45□□□□□ -0.58
BRCA1-214ENST00000477152 PLA2R1Q13018 1463 aa11.45□□□□□ -0.58
BRCA1-214ENST00000477152 CCDC141Q6ZP82 1450 aa11.45□□□□□ -0.58
BRCA1-214ENST00000477152 MYO3AQ8NEV4 1616 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms