RNA–Protein interactions for RNA: ENST00000470763.1

NPHP4-207, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 3,156 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-207ENST00000470763 RCAN3Q9UKA8 241 aa18.26■□□□□ 0.51
NPHP4-207ENST00000470763 MAGI3Q5TCQ9 1506 aa18.26■□□□□ 0.51
NPHP4-207ENST00000470763 GLI2P10070 1586 aa18.26■□□□□ 0.51
NPHP4-207ENST00000470763 EPRSP07814 1512 aaKnown RBP18.25■□□□□ 0.51
NPHP4-207ENST00000470763 BCORL1Q5H9F3 1711 aa18.25■□□□□ 0.51
NPHP4-207ENST00000470763 NFKBIBQ15653 356 aa18.25■□□□□ 0.51
NPHP4-207ENST00000470763 FRAT1Q92837 279 aaPredicted RBP18.24■□□□□ 0.51
NPHP4-207ENST00000470763 SLC4A1APQ9BWU0 796 aaKnown RBP18.24■□□□□ 0.51
NPHP4-207ENST00000470763 ARID3CA6NKF2 412 aa18.24■□□□□ 0.51
NPHP4-207ENST00000470763 MS4A1P11836 297 aa18.24■□□□□ 0.51
NPHP4-207ENST00000470763 USP47Q96K76 1375 aa18.23■□□□□ 0.51
NPHP4-207ENST00000470763 PPRC1Q5VV67 1664 aaKnown RBP18.22■□□□□ 0.51
NPHP4-207ENST00000470763 PLIN1O60240 522 aa18.22■□□□□ 0.51
NPHP4-207ENST00000470763 WDR7Q9Y4E6 1490 aa18.21■□□□□ 0.51
NPHP4-207ENST00000470763 TCOF1Q13428 1488 aaKnown RBP18.21■□□□□ 0.51
NPHP4-207ENST00000470763 MIA2Q96PC5 1412 aa18.21■□□□□ 0.51
NPHP4-207ENST00000470763 DDRGK1Q96HY6 314 aa18.2■□□□□ 0.5
NPHP4-207ENST00000470763 MAP3K4Q9Y6R4 1608 aa18.18■□□□□ 0.5
NPHP4-207ENST00000470763 ATP10BO94823 1461 aa18.18■□□□□ 0.5
NPHP4-207ENST00000470763 LRPPRCP42704 1394 aaKnown RBP18.17■□□□□ 0.5
NPHP4-207ENST00000470763 CDCA7LQ96GN5 454 aa18.17■□□□□ 0.5
NPHP4-207ENST00000470763 RAPGEF6Q8TEU7 1601 aa18.16■□□□□ 0.5
NPHP4-207ENST00000470763 DAXXQ9UER7 740 aaPredicted RBP18.16■□□□□ 0.5
NPHP4-207ENST00000470763 CRBNQ96SW2 442 aa18.13■□□□□ 0.49
NPHP4-207ENST00000470763 NUP153P49790 1475 aaKnown RBP18.13■□□□□ 0.49
NPHP4-207ENST00000470763 KIF15Q9NS87 1388 aa18.12■□□□□ 0.49
NPHP4-207ENST00000470763 MYBBP1AQ9BQG0 1328 aaKnown RBP18.12■□□□□ 0.49
NPHP4-207ENST00000470763 COL17A1Q9UMD9 1497 aaPredicted RBP18.11■□□□□ 0.49
NPHP4-207ENST00000470763 BRD4O60885 1362 aaPredicted RBP18.1■□□□□ 0.49
NPHP4-207ENST00000470763 FRAT2O75474 233 aaPredicted RBP18.1■□□□□ 0.49
NPHP4-207ENST00000470763 ZNF644Q9H582 1327 aaPredicted RBP18.09■□□□□ 0.49
NPHP4-207ENST00000470763 KDM5CP41229 1560 aa18.09■□□□□ 0.49
NPHP4-207ENST00000470763 CDK13Q14004 1512 aaKnown RBP18.08■□□□□ 0.48
NPHP4-207ENST00000470763 DAPK1P53355 1430 aa18.07■□□□□ 0.48
NPHP4-207ENST00000470763 CD109Q6YHK3 1445 aa18.07■□□□□ 0.48
NPHP4-207ENST00000470763 CARD11Q9BXL7 1154 aa18.07■□□□□ 0.48
NPHP4-207ENST00000470763 ROCK2O75116 1388 aaKnown RBP18.06■□□□□ 0.48
NPHP4-207ENST00000470763 DCAF11Q8TEB1 546 aa18.06■□□□□ 0.48
NPHP4-207ENST00000470763 ARID4BQ4LE39 1312 aaPredicted RBP18.06■□□□□ 0.48
NPHP4-207ENST00000470763 MBD5Q9P267 1494 aa18.06■□□□□ 0.48
NPHP4-207ENST00000470763 C20orf194Q5TEA3 1177 aa18.05■□□□□ 0.48
NPHP4-207ENST00000470763 RALBP1Q15311 655 aa18.05■□□□□ 0.48
NPHP4-207ENST00000470763 ST20-MTHFSA0A0A6YYL1 179 aa18.05■□□□□ 0.48
NPHP4-207ENST00000470763 PDE3BQ13370 1112 aa18.04■□□□□ 0.48
NPHP4-207ENST00000470763 KIF14Q15058 1648 aa18.03■□□□□ 0.48
NPHP4-207ENST00000470763 ABCC5O15440 1437 aa18.03■□□□□ 0.48
NPHP4-207ENST00000470763 PZPP20742 1482 aa18.02■□□□□ 0.48
NPHP4-207ENST00000470763 ROCK1Q13464 1354 aa18.02■□□□□ 0.48
NPHP4-207ENST00000470763 KDM2AQ9Y2K7 1162 aa18.02■□□□□ 0.48
NPHP4-207ENST00000470763 ABCA9Q8IUA7 1624 aa18.01■□□□□ 0.47
NPHP4-207ENST00000470763 PKD2Q13563 968 aa18.01■□□□□ 0.47
NPHP4-207ENST00000470763 NLRP13Q86W25 1043 aa18.01■□□□□ 0.47
NPHP4-207ENST00000470763 RSPH6AQ9H0K4 717 aa18.01■□□□□ 0.47
NPHP4-207ENST00000470763 FAM43AQ8N2R8 423 aa17.99■□□□□ 0.47
NPHP4-207ENST00000470763 C8orf34Q49A92 452 aa17.99■□□□□ 0.47
NPHP4-207ENST00000470763 RGS3P49796 1198 aa17.98■□□□□ 0.47
NPHP4-207ENST00000470763 FAM161AQ3B820 660 aa17.98■□□□□ 0.47
NPHP4-207ENST00000470763 DNMT1P26358 1616 aaKnown RBP17.97■□□□□ 0.47
NPHP4-207ENST00000470763 KDM2BQ8NHM5 1336 aa17.97■□□□□ 0.47
NPHP4-207ENST00000470763 KIAA1107Q9UPP5 1409 aa17.96■□□□□ 0.47
NPHP4-207ENST00000470763 KTN1Q86UP2 1357 aaKnown RBP17.96■□□□□ 0.46
NPHP4-207ENST00000470763 PLEKHD1A6NEE1 506 aa17.95■□□□□ 0.46
NPHP4-207ENST00000470763 CC2D1BQ5T0F9 858 aaKnown RBP17.95■□□□□ 0.46
NPHP4-207ENST00000470763 AEBP2Q6ZN18 517 aaPredicted RBP17.95■□□□□ 0.46
NPHP4-207ENST00000470763 RALGAPBQ86X10 1494 aa17.94■□□□□ 0.46
NPHP4-207ENST00000470763 POGKQ9P215 609 aa17.93■□□□□ 0.46
NPHP4-207ENST00000470763 CENPQQ7L2Z9 268 aaPredicted RBP17.93■□□□□ 0.46
NPHP4-207ENST00000470763 PARD3Q8TEW0 1356 aa17.92■□□□□ 0.46
NPHP4-207ENST00000470763 KDM4FA0A1W2PPD8 638 aa17.92■□□□□ 0.46
NPHP4-207ENST00000470763 E9PCH4 1651 aa17.9■□□□□ 0.46
NPHP4-207ENST00000470763 ARXQ96QS3 562 aa17.9■□□□□ 0.46
NPHP4-207ENST00000470763 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.9■□□□□ 0.461e-6■■■■■ 29.5
NPHP4-207ENST00000470763 ARAP3Q8WWN8 1544 aa17.9■□□□□ 0.46
NPHP4-207ENST00000470763 RRAGDQ9NQL2 400 aaPredicted RBP17.89■□□□□ 0.46
NPHP4-207ENST00000470763 ZNF777Q9ULD5 760 aaPredicted RBP17.89■□□□□ 0.45
NPHP4-207ENST00000470763 TTC37Q6PGP7 1564 aa17.88■□□□□ 0.45
NPHP4-207ENST00000470763 UHRF1BP1Q6BDS2 1440 aa17.88■□□□□ 0.45
NPHP4-207ENST00000470763 NEO1Q92859 1461 aa17.86■□□□□ 0.45
NPHP4-207ENST00000470763 SLKQ9H2G2 1235 aaPredicted RBP17.86■□□□□ 0.45
NPHP4-207ENST00000470763 PER1O15534 1290 aaPredicted RBP17.85■□□□□ 0.45
NPHP4-207ENST00000470763 BLMP54132 1417 aaPredicted RBP17.85■□□□□ 0.45
NPHP4-207ENST00000470763 RAPGEF3O95398 923 aa17.83■□□□□ 0.45
NPHP4-207ENST00000470763 PKNOX2Q96KN3 472 aa17.83■□□□□ 0.44
NPHP4-207ENST00000470763 CFDP1Q9UEE9 299 aaPredicted RBP17.82■□□□□ 0.44
NPHP4-207ENST00000470763 ADAMTS8Q9UP79 889 aa17.82■□□□□ 0.44
NPHP4-207ENST00000470763 ZMYM4Q5VZL5 1548 aa17.81■□□□□ 0.44
NPHP4-207ENST00000470763 NUP155O75694 1391 aa17.81■□□□□ 0.44
NPHP4-207ENST00000470763 FRMPD1Q5SYB0 1578 aa17.8■□□□□ 0.44
NPHP4-207ENST00000470763 FANCAO15360 1455 aa17.8■□□□□ 0.44
NPHP4-207ENST00000470763 ADGRL1O94910 1474 aa17.8■□□□□ 0.44
NPHP4-207ENST00000470763 DUSP27Q5VZP5 1158 aa17.8■□□□□ 0.44
NPHP4-207ENST00000470763 CAMSAP2Q08AD1 1489 aa17.8■□□□□ 0.44
NPHP4-207ENST00000470763 TROQ12816 1431 aaPredicted RBP17.79■□□□□ 0.44
NPHP4-207ENST00000470763 PLEKHH1Q9ULM0 1364 aa17.79■□□□□ 0.44
NPHP4-207ENST00000470763 SEC24BO95487 1268 aa17.78■□□□□ 0.44
NPHP4-207ENST00000470763 PANK3Q9H999 370 aa17.78■□□□□ 0.44
NPHP4-207ENST00000470763 USP19O94966 1318 aa17.78■□□□□ 0.44
NPHP4-207ENST00000470763 PLCH2O75038 1416 aa17.78■□□□□ 0.44
NPHP4-207ENST00000470763 NBPF1Q3BBV0 1214 aa17.77■□□□□ 0.44
NPHP4-207ENST00000470763 ANKRD50Q9ULJ7 1429 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms