RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-208ENST00000469356 RNF17Q9BXT8 1623 aaKnown RBP34.3■■■■□ 3.08
SREBF1-208ENST00000469356 KANK1Q14678 1352 aa34.3■■■■□ 3.08
SREBF1-208ENST00000469356 SETD5Q9C0A6 1442 aa34.28■■■■□ 3.08
SREBF1-208ENST00000469356 FAM135AQ9P2D6 1515 aa34.26■■■■□ 3.08
SREBF1-208ENST00000469356 ADAMTSL3P82987 1691 aa34.25■■■■□ 3.07
SREBF1-208ENST00000469356 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.25■■■■□ 3.073e-7■■□□□ 12.9
SREBF1-208ENST00000469356 CNTLNQ9NXG0 1405 aa34.24■■■■□ 3.07
SREBF1-208ENST00000469356 WASHC2CQ9Y4E1 1318 aa34.23■■■■□ 3.07
SREBF1-208ENST00000469356 FER1L4A9Z1Z3 1794 aa34.23■■■■□ 3.07
SREBF1-208ENST00000469356 DEPDC5O75140 1603 aa34.22■■■■□ 3.07
SREBF1-208ENST00000469356 PRDM15P57071 1507 aaPredicted RBP34.19■■■■□ 3.06
SREBF1-208ENST00000469356 MADDQ8WXG6 1647 aa34.17■■■■□ 3.06
SREBF1-208ENST00000469356 KDM5DQ9BY66 1539 aa34.17■■■■□ 3.06
SREBF1-208ENST00000469356 UNC13BO14795 1591 aa34.17■■■■□ 3.06
SREBF1-208ENST00000469356 ZC3H13Q5T200 1668 aaKnown RBP34.16■■■■□ 3.06
SREBF1-208ENST00000469356 HRCP23327 699 aa34.15■■■■□ 3.06
SREBF1-208ENST00000469356 MROH1Q8NDA8 1641 aa34.15■■■■□ 3.06
SREBF1-208ENST00000469356 KDM4FA0A1W2PPD8 638 aa34.14■■■■□ 3.06
SREBF1-208ENST00000469356 TRIM52Q96A61 297 aa34.14■■■■□ 3.06
SREBF1-208ENST00000469356 NUP155O75694 1391 aa34.14■■■■□ 3.06
SREBF1-208ENST00000469356 RIMS1Q86UR5 1692 aaKnown RBP34.12■■■■□ 3.05
SREBF1-208ENST00000469356 RAB3GAP2Q9H2M9 1393 aa34.11■■■■□ 3.05
SREBF1-208ENST00000469356 CLTCQ00610 1675 aaKnown RBP34.11■■■■□ 3.05
SREBF1-208ENST00000469356 MROH2AA6NES4 1674 aa34.1■■■■□ 3.05
SREBF1-208ENST00000469356 ABCC3O15438 1527 aa34.08■■■■□ 3.05
SREBF1-208ENST00000469356 VWDEQ8N2E2 1590 aa34.07■■■■□ 3.04
SREBF1-208ENST00000469356 ZMYM3Q14202 1370 aa34.06■■■■□ 3.04
SREBF1-208ENST00000469356 CEP152O94986 1710 aa34.05■■■■□ 3.04
SREBF1-208ENST00000469356 LMTK2Q8IWU2 1503 aa34.05■■■■□ 3.04
SREBF1-208ENST00000469356 PCGF6Q9BYE7 350 aa34.04■■■■□ 3.04
SREBF1-208ENST00000469356 IQGAP3Q86VI3 1631 aa34.04■■■■□ 3.04
SREBF1-208ENST00000469356 PTPRMP28827 1452 aa34.02■■■■□ 3.04
SREBF1-208ENST00000469356 CAMSAP1Q5T5Y3 1602 aa33.99■■■■□ 3.03
SREBF1-208ENST00000469356 TET3O43151 1660 aa33.98■■■■□ 3.03
SREBF1-208ENST00000469356 ARHGAP31Q2M1Z3 1444 aa33.97■■■■□ 3.03
SREBF1-208ENST00000469356 SLC4A1APQ9BWU0 796 aaKnown RBP33.96■■■■□ 3.03
SREBF1-208ENST00000469356 C3P01024 1663 aa33.96■■■■□ 3.03
SREBF1-208ENST00000469356 PLPPR3Q6T4P5 718 aa33.95■■■■□ 3.03
SREBF1-208ENST00000469356 PZPP20742 1482 aa33.94■■■■□ 3.02
SREBF1-208ENST00000469356 EFCAB6Q5THR3 1501 aa33.93■■■■□ 3.02
SREBF1-208ENST00000469356 CEBPAP49715 358 aaPredicted RBP33.92■■■■□ 3.02
SREBF1-208ENST00000469356 RPRD2Q5VT52 1461 aaKnown RBP33.9■■■■□ 3.02
SREBF1-208ENST00000469356 SETD1BQ9UPS6 1966 aaKnown RBP33.9■■■■□ 3.02
SREBF1-208ENST00000469356 MPHOSPH9Q99550 1183 aa33.88■■■■□ 3.01
SREBF1-208ENST00000469356 NPATQ14207 1427 aa33.88■■■■□ 3.01
SREBF1-208ENST00000469356 CFAP65Q6ZU64 1925 aaKnown RBP33.87■■■■□ 3.01
SREBF1-208ENST00000469356 AEBP2Q6ZN18 517 aaPredicted RBP33.85■■■■□ 3.01
SREBF1-208ENST00000469356 PKD2Q13563 968 aa33.84■■■■□ 3.01
SREBF1-208ENST00000469356 FBXO31Q5XUX0 539 aaPredicted RBP33.81■■■■□ 3
SREBF1-208ENST00000469356 E9PCH4 1651 aa33.81■■■■□ 3
SREBF1-208ENST00000469356 PREX1Q8TCU6 1659 aa33.79■■■■□ 3
SREBF1-208ENST00000469356 ERVK-7P63135 1459 aa33.79■■■■□ 3
SREBF1-208ENST00000469356 TNRQ92752 1358 aa33.78■■■■□ 3
SREBF1-208ENST00000469356 SPATA31D1Q6ZQQ2 1576 aa33.78■■■■□ 3
SREBF1-208ENST00000469356 NOS1P29475 1434 aa33.72■■■□□ 2.99
SREBF1-208ENST00000469356 SLC52A1Q9NWF4 448 aa33.71■■■□□ 2.99
SREBF1-208ENST00000469356 UHRF1BP1Q6BDS2 1440 aa33.69■■■□□ 2.98
SREBF1-208ENST00000469356 SPHKAPQ2M3C7 1700 aa33.68■■■□□ 2.98
SREBF1-208ENST00000469356 NLRP1Q9C000 1473 aa33.68■■■□□ 2.98
SREBF1-208ENST00000469356 PTPRTO14522 1441 aa33.66■■■□□ 2.98
SREBF1-208ENST00000469356 FOXD1Q16676 465 aa33.63■■■□□ 2.97
SREBF1-208ENST00000469356 MYO3AQ8NEV4 1616 aa33.61■■■□□ 2.97
SREBF1-208ENST00000469356 SYNMO15061 1565 aa33.61■■■□□ 2.97
SREBF1-208ENST00000469356 STAG3Q9UJ98 1225 aa33.6■■■□□ 2.97
SREBF1-208ENST00000469356 TRPM2O94759 1503 aa33.6■■■□□ 2.97
SREBF1-208ENST00000469356 A2ML1A8K2U0 1454 aa33.58■■■□□ 2.97
SREBF1-208ENST00000469356 IDI1Q13907 227 aa33.57■■■□□ 2.97
SREBF1-208ENST00000469356 DHX57Q6P158 1386 aaKnown RBP33.56■■■□□ 2.96
SREBF1-208ENST00000469356 CEP170BQ9Y4F5 1589 aaPredicted RBP33.55■■■□□ 2.96
SREBF1-208ENST00000469356 CCDC144AA2RUR9 1427 aa33.54■■■□□ 2.96
SREBF1-208ENST00000469356 ZNF142P52746 1687 aaPredicted RBP33.54■■■□□ 2.96
SREBF1-208ENST00000469356 THEMISQ8N1K5 641 aaPredicted RBP33.53■■■□□ 2.96
SREBF1-208ENST00000469356 PIK3C2BO00750 1634 aa33.52■■■□□ 2.96
SREBF1-208ENST00000469356 PLA2R1Q13018 1463 aa33.52■■■□□ 2.96
SREBF1-208ENST00000469356 ANKRD30BQ9BXX2 1392 aa33.51■■■□□ 2.96
SREBF1-208ENST00000469356 UGGT1Q9NYU2 1555 aa33.51■■■□□ 2.96
SREBF1-208ENST00000469356 CHGAP10645 457 aaKnown RBP33.5■■■□□ 2.95
SREBF1-208ENST00000469356 KDM5AP29375 1690 aaKnown RBP33.49■■■□□ 2.95
SREBF1-208ENST00000469356 KIF1BO60333 1816 aa33.48■■■□□ 2.95
SREBF1-208ENST00000469356 LMTK3Q96Q04 1460 aa33.46■■■□□ 2.95
SREBF1-208ENST00000469356 CLTCL1P53675 1640 aa33.46■■■□□ 2.95
SREBF1-208ENST00000469356 ADGRB3O60242 1522 aa33.44■■■□□ 2.94
SREBF1-208ENST00000469356 UBR1Q8IWV7 1749 aa33.43■■■□□ 2.94
SREBF1-208ENST00000469356 HDGFP51858 240 aaKnown RBP33.42■■■□□ 2.94
SREBF1-208ENST00000469356 TMEM131LA2VDJ0 1609 aa33.38■■■□□ 2.93
SREBF1-208ENST00000469356 ZNF326Q5BKZ1 582 aaKnown RBP33.37■■■□□ 2.93
SREBF1-208ENST00000469356 CLSPNQ9HAW4 1339 aa33.36■■■□□ 2.93
SREBF1-208ENST00000469356 CCER1Q8TC90 406 aaPredicted RBP33.35■■■□□ 2.93
SREBF1-208ENST00000469356 EID1Q9Y6B2 187 aa33.35■■■□□ 2.93
SREBF1-208ENST00000469356 HSPA2P54652 639 aa33.34■■■□□ 2.93
SREBF1-208ENST00000469356 MYO5BQ9ULV0 1848 aa33.33■■■□□ 2.93
SREBF1-208ENST00000469356 ANKLE2Q86XL3 938 aa33.32■■■□□ 2.93
SREBF1-208ENST00000469356 ABCF1Q8NE71 845 aaKnown RBP eCLIP33.32■■■□□ 2.93
SREBF1-208ENST00000469356 NEURL4Q96JN8 1562 aa33.32■■■□□ 2.92
SREBF1-208ENST00000469356 TMEM2Q9UHN6 1383 aa33.31■■■□□ 2.92
SREBF1-208ENST00000469356 RPGRIP1LQ68CZ1 1315 aa33.31■■■□□ 2.92
SREBF1-208ENST00000469356 SLIT1O75093 1534 aa33.29■■■□□ 2.92
SREBF1-208ENST00000469356 RGL3Q3MIN7 710 aa33.27■■■□□ 2.92
SREBF1-208ENST00000469356 TXNDC2Q86VQ3 553 aa33.27■■■□□ 2.92
SREBF1-208ENST00000469356 ARHGAP23Q9P227 1491 aa33.26■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms