RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 POGZQ7Z3K3 1410 aa10.16□□□□□ -0.78
HMGB1-207ENST00000468384 YY1P25490 414 aa10.14□□□□□ -0.79
HMGB1-207ENST00000468384 CSRNP3Q8WYN3 585 aa10.14□□□□□ -0.79
HMGB1-207ENST00000468384 SLC4A1APQ9BWU0 796 aaKnown RBP10.14□□□□□ -0.79
HMGB1-207ENST00000468384 RUSC2Q8N2Y8 1516 aa10.13□□□□□ -0.79
HMGB1-207ENST00000468384 UHRF1BP1LA0JNW5 1464 aa10.12□□□□□ -0.79
HMGB1-207ENST00000468384 ABCA10Q8WWZ4 1543 aa10.12□□□□□ -0.79
HMGB1-207ENST00000468384 MLECQ14165 292 aa10.11□□□□□ -0.79
HMGB1-207ENST00000468384 KIAA0556O60303 1618 aa10.11□□□□□ -0.79
HMGB1-207ENST00000468384 CCDC88BA6NC98 1476 aa10.1□□□□□ -0.79
HMGB1-207ENST00000468384 TRIM52Q96A61 297 aa10.1□□□□□ -0.79
HMGB1-207ENST00000468384 KDM5BQ9UGL1 1544 aa10.09□□□□□ -0.79
HMGB1-207ENST00000468384 WDR7Q9Y4E6 1490 aa10.09□□□□□ -0.79
HMGB1-207ENST00000468384 FANCAO15360 1455 aa10.08□□□□□ -0.8
HMGB1-207ENST00000468384 PTPRKQ15262 1439 aa10.07□□□□□ -0.8
HMGB1-207ENST00000468384 CUX1P39880 1505 aa10.07□□□□□ -0.8
HMGB1-207ENST00000468384 ALKQ9UM73 1620 aa10.07□□□□□ -0.8
HMGB1-207ENST00000468384 FER1L4A9Z1Z3 1794 aa10.07□□□□□ -0.8
HMGB1-207ENST00000468384 OCEL1Q9H607 264 aa10.07□□□□□ -0.8
HMGB1-207ENST00000468384 TMEM106CQ9BVX2 250 aa10.06□□□□□ -0.8
HMGB1-207ENST00000468384 SETD1BQ9UPS6 1966 aaKnown RBP10.06□□□□□ -0.8
HMGB1-207ENST00000468384 UACAQ9BZF9 1416 aa10.06□□□□□ -0.8
HMGB1-207ENST00000468384 ERBB3P21860 1342 aa10.06□□□□□ -0.8
HMGB1-207ENST00000468384 NCKAP5LQ9HCH0 1330 aa10.06□□□□□ -0.8
HMGB1-207ENST00000468384 PHLDB1Q86UU1 1377 aa10.05□□□□□ -0.8
HMGB1-207ENST00000468384 KCNH8Q96L42 1107 aa10.05□□□□□ -0.8
HMGB1-207ENST00000468384 ARHGEF40Q8TER5 1519 aa10.05□□□□□ -0.8
HMGB1-207ENST00000468384 TNIKQ9UKE5 1360 aa10.04□□□□□ -0.8
HMGB1-207ENST00000468384 CEP350Q5VT06 3117 aa10.03□□□□□ -0.8
HMGB1-207ENST00000468384 ZCCHC11Q5TAX3 1644 aaKnown RBP10.02□□□□□ -0.81
HMGB1-207ENST00000468384 PCDHB13Q9Y5F0 798 aa10.01□□□□□ -0.81
HMGB1-207ENST00000468384 FRMPD1Q5SYB0 1578 aa10.01□□□□□ -0.81
HMGB1-207ENST00000468384 VARS2Q5ST30 1063 aaKnown RBP10□□□□□ -0.81
HMGB1-207ENST00000468384 IRX2Q9BZI1 471 aaPredicted RBP9.99□□□□□ -0.81
HMGB1-207ENST00000468384 SIGLEC1Q9BZZ2 1709 aa9.99□□□□□ -0.81
HMGB1-207ENST00000468384 AKNAQ7Z591 1439 aa9.99□□□□□ -0.81
HMGB1-207ENST00000468384 CPS1P31327 1500 aa9.98□□□□□ -0.81
HMGB1-207ENST00000468384 ARHGEF12Q9NZN5 1544 aa9.98□□□□□ -0.81
HMGB1-207ENST00000468384 CAMSAP1Q5T5Y3 1602 aa9.98□□□□□ -0.81
HMGB1-207ENST00000468384 C3orf67Q6ZVT6 689 aa9.98□□□□□ -0.81
HMGB1-207ENST00000468384 HOXB3P14651 431 aaPredicted RBP9.97□□□□□ -0.81
HMGB1-207ENST00000468384 RASEFQ8IZ41 740 aa9.97□□□□□ -0.81
HMGB1-207ENST00000468384 IFNL1Q8IU54 200 aa9.96□□□□□ -0.82
HMGB1-207ENST00000468384 LRRC7Q96NW7 1537 aa9.96□□□□□ -0.82
HMGB1-207ENST00000468384 LRP5O75197 1615 aa9.96□□□□□ -0.82
HMGB1-207ENST00000468384 HOXB1P14653 301 aaPredicted RBP9.95□□□□□ -0.82
HMGB1-207ENST00000468384 PTGER2P43116 358 aa9.95□□□□□ -0.82
HMGB1-207ENST00000468384 PKD2Q13563 968 aa9.95□□□□□ -0.82
HMGB1-207ENST00000468384 ERICH3Q5RHP9 1530 aa9.95□□□□□ -0.82
HMGB1-207ENST00000468384 RXRBP28702 533 aa9.94□□□□□ -0.82
HMGB1-207ENST00000468384 C1QTNF8P60827 252 aa9.93□□□□□ -0.82
HMGB1-207ENST00000468384 CARMIL2Q6F5E8 1435 aa9.92□□□□□ -0.82
HMGB1-207ENST00000468384 ZNF772Q68DY9 489 aaPredicted RBP9.92□□□□□ -0.82
HMGB1-207ENST00000468384 ANKRD13DQ6ZTN6 518 aa9.92□□□□□ -0.82
HMGB1-207ENST00000468384 CDK12Q9NYV4 1490 aaPredicted RBP9.91□□□□□ -0.82
HMGB1-207ENST00000468384 TRAPPC8Q9Y2L5 1435 aa9.91□□□□□ -0.82
HMGB1-207ENST00000468384 SHANK2Q9UPX8 1470 aa9.91□□□□□ -0.82
HMGB1-207ENST00000468384 NEO1Q92859 1461 aa9.9□□□□□ -0.83
HMGB1-207ENST00000468384 RAPGEF6Q8TEU7 1601 aa9.88□□□□□ -0.83
HMGB1-207ENST00000468384 TCOF1Q13428 1488 aaKnown RBP9.87□□□□□ -0.83
HMGB1-207ENST00000468384 SGIP1Q9BQI5 828 aa9.87□□□□□ -0.83
HMGB1-207ENST00000468384 ZNF687Q8N1G0 1237 aa9.86□□□□□ -0.83
HMGB1-207ENST00000468384 PDCD7Q8N8D1 485 aaKnown RBP9.86□□□□□ -0.83
HMGB1-207ENST00000468384 PLA2R1Q13018 1463 aa9.85□□□□□ -0.83
HMGB1-207ENST00000468384 ZFYVE16Q7Z3T8 1539 aa9.85□□□□□ -0.83
HMGB1-207ENST00000468384 FHOD3Q2V2M9 1422 aa9.84□□□□□ -0.83
HMGB1-207ENST00000468384 NUTM2BA6NNL0 878 aaPredicted RBP9.84□□□□□ -0.83
HMGB1-207ENST00000468384 NUTM2EB1AL46 878 aaPredicted RBP9.84□□□□□ -0.83
HMGB1-207ENST00000468384 NUTM2DQ5VT03 806 aaPredicted RBP9.84□□□□□ -0.83
HMGB1-207ENST00000468384 NUTM2AQ8IVF1 878 aaPredicted RBP9.84□□□□□ -0.83
HMGB1-207ENST00000468384 ZNF710Q8N1W2 664 aa9.83□□□□□ -0.84
HMGB1-207ENST00000468384 ZNF784Q8NCA9 323 aaPredicted RBP9.83□□□□□ -0.84
HMGB1-207ENST00000468384 DENND4BO75064 1496 aaPredicted RBP9.83□□□□□ -0.84
HMGB1-207ENST00000468384 RAPGEF2Q9Y4G8 1499 aa9.83□□□□□ -0.84
HMGB1-207ENST00000468384 EFCAB5A4FU69 1503 aa9.82□□□□□ -0.84
HMGB1-207ENST00000468384 C3P01024 1663 aa9.8□□□□□ -0.84
HMGB1-207ENST00000468384 ATAD2Q6PL18 1390 aa9.8□□□□□ -0.84
HMGB1-207ENST00000468384 WRNQ14191 1432 aaPredicted RBP eCLIP9.8□□□□□ -0.84
HMGB1-207ENST00000468384 RICTORQ6R327 1708 aa9.79□□□□□ -0.84
HMGB1-207ENST00000468384 RGS12O14924 1447 aa9.79□□□□□ -0.84
HMGB1-207ENST00000468384 MAGI2Q86UL8 1455 aa9.79□□□□□ -0.84
HMGB1-207ENST00000468384 ZMYM4Q5VZL5 1548 aa9.78□□□□□ -0.84
HMGB1-207ENST00000468384 HCSTQ9UBK5 93 aa9.78□□□□□ -0.84
HMGB1-207ENST00000468384 FAM135BQ49AJ0 1406 aa9.78□□□□□ -0.84
HMGB1-207ENST00000468384 RNF17Q9BXT8 1623 aaKnown RBP9.78□□□□□ -0.84
HMGB1-207ENST00000468384 MEX3CQ5U5Q3 659 aaKnown RBP9.77□□□□□ -0.85
HMGB1-207ENST00000468384 NHSL1Q5SYE7 1610 aa9.77□□□□□ -0.85
HMGB1-207ENST00000468384 VWDEQ8N2E2 1590 aa9.75□□□□□ -0.85
HMGB1-207ENST00000468384 ABCA9Q8IUA7 1624 aa9.74□□□□□ -0.85
HMGB1-207ENST00000468384 ATP10AO60312 1499 aa9.74□□□□□ -0.85
HMGB1-207ENST00000468384 HRCP23327 699 aa9.74□□□□□ -0.85
HMGB1-207ENST00000468384 PRELPP51888 382 aa9.74□□□□□ -0.85
HMGB1-207ENST00000468384 CCDC125Q86Z20 511 aa9.74□□□□□ -0.85
HMGB1-207ENST00000468384 JCADQ9P266 1359 aa9.74□□□□□ -0.85
HMGB1-207ENST00000468384 C9orf84Q5VXU9 1444 aa9.73□□□□□ -0.85
HMGB1-207ENST00000468384 DISP1Q96F81 1524 aa9.73□□□□□ -0.85
HMGB1-207ENST00000468384 Q6ZNB5 142 aa9.73□□□□□ -0.85
HMGB1-207ENST00000468384 L3MBTL3Q96JM7 780 aaPredicted RBP9.73□□□□□ -0.85
HMGB1-207ENST00000468384 LRP6O75581 1613 aa9.73□□□□□ -0.85
HMGB1-207ENST00000468384 EP400Q96L91 3159 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms