RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 ZNF518AQ6AHZ1 1483 aa25.82■■□□□ 1.72
COL9A3-205ENST00000466192 PLA2R1Q13018 1463 aa25.82■■□□□ 1.72
COL9A3-205ENST00000466192 HSPA5P11021 654 aaKnown RBP25.82■■□□□ 1.72
COL9A3-205ENST00000466192 EIF4G2P78344 907 aaKnown RBP eCLIP25.79■■□□□ 1.72
COL9A3-205ENST00000466192 MYT1LQ9UL68 1186 aa25.79■■□□□ 1.72
COL9A3-205ENST00000466192 KDM5CP41229 1560 aa25.77■■□□□ 1.72
COL9A3-205ENST00000466192 EIF2AK4Q9P2K8 1649 aaKnown RBP25.77■■□□□ 1.72
COL9A3-205ENST00000466192 CCDC144AA2RUR9 1427 aa25.77■■□□□ 1.72
COL9A3-205ENST00000466192 POGZQ7Z3K3 1410 aa25.77■■□□□ 1.72
COL9A3-205ENST00000466192 MAP3K4Q9Y6R4 1608 aa25.77■■□□□ 1.72
COL9A3-205ENST00000466192 DHX29Q7Z478 1369 aaKnown RBP25.75■■□□□ 1.71
COL9A3-205ENST00000466192 E9PCH4 1651 aa25.75■■□□□ 1.71
COL9A3-205ENST00000466192 NEO1Q92859 1461 aa25.74■■□□□ 1.71
COL9A3-205ENST00000466192 UHRF1BP1Q6BDS2 1440 aa25.74■■□□□ 1.71
COL9A3-205ENST00000466192 ATP10AO60312 1499 aa25.74■■□□□ 1.71
COL9A3-205ENST00000466192 GLI2P10070 1586 aa25.71■■□□□ 1.71
COL9A3-205ENST00000466192 ZNF326Q5BKZ1 582 aaKnown RBP25.71■■□□□ 1.71
COL9A3-205ENST00000466192 VWDEQ8N2E2 1590 aa25.71■■□□□ 1.71
COL9A3-205ENST00000466192 MROH1Q8NDA8 1641 aa25.71■■□□□ 1.71
COL9A3-205ENST00000466192 HECW2Q9P2P5 1572 aa25.7■■□□□ 1.7
COL9A3-205ENST00000466192 SPATA31E1Q6ZUB1 1445 aa25.7■■□□□ 1.7
COL9A3-205ENST00000466192 TET3O43151 1660 aa25.7■■□□□ 1.7
COL9A3-205ENST00000466192 MLH3Q9UHC1 1453 aa25.7■■□□□ 1.7
COL9A3-205ENST00000466192 KIF3BO15066 747 aa25.69■■□□□ 1.7
COL9A3-205ENST00000466192 PRDM15P57071 1507 aaPredicted RBP25.69■■□□□ 1.7
COL9A3-205ENST00000466192 WASHC2AQ641Q2 1341 aa25.67■■□□□ 1.7
COL9A3-205ENST00000466192 DCAF11Q8TEB1 546 aa25.66■■□□□ 1.7
COL9A3-205ENST00000466192 A2MP01023 1474 aa25.66■■□□□ 1.7
COL9A3-205ENST00000466192 RALGAPBQ86X10 1494 aa25.66■■□□□ 1.7
COL9A3-205ENST00000466192 SPHKAPQ2M3C7 1700 aa25.65■■□□□ 1.7
COL9A3-205ENST00000466192 KDM2AQ9Y2K7 1162 aa25.65■■□□□ 1.7
COL9A3-205ENST00000466192 KANK1Q14678 1352 aa25.64■■□□□ 1.7
COL9A3-205ENST00000466192 DIP2BQ9P265 1576 aa25.64■■□□□ 1.7
COL9A3-205ENST00000466192 ABCA6Q8N139 1617 aa25.64■■□□□ 1.69
COL9A3-205ENST00000466192 POLR1AO95602 1720 aaPredicted RBP25.64■■□□□ 1.69
COL9A3-205ENST00000466192 RICTORQ6R327 1708 aa25.64■■□□□ 1.69
COL9A3-205ENST00000466192 FRMPD1Q5SYB0 1578 aa25.63■■□□□ 1.69
COL9A3-205ENST00000466192 RNF17Q9BXT8 1623 aaKnown RBP25.61■■□□□ 1.69
COL9A3-205ENST00000466192 RAPGEF3O95398 923 aa25.61■■□□□ 1.69
COL9A3-205ENST00000466192 TRPM2O94759 1503 aa25.61■■□□□ 1.69
COL9A3-205ENST00000466192 C11orf95C9JLR9 678 aaPredicted RBP25.61■■□□□ 1.69
COL9A3-205ENST00000466192 RGL3Q3MIN7 710 aa25.61■■□□□ 1.69
COL9A3-205ENST00000466192 PTPRTO14522 1441 aa25.59■■□□□ 1.69
COL9A3-205ENST00000466192 USP47Q96K76 1375 aa25.59■■□□□ 1.69
COL9A3-205ENST00000466192 GTF3C3Q9Y5Q9 886 aa25.58■■□□□ 1.68
COL9A3-205ENST00000466192 CEP152O94986 1710 aa25.57■■□□□ 1.68
COL9A3-205ENST00000466192 FAM69CQ0P6D2 419 aa25.57■■□□□ 1.68
COL9A3-205ENST00000466192 TRPM1Q7Z4N2 1603 aa25.57■■□□□ 1.68
COL9A3-205ENST00000466192 PRAG1Q86YV5 1406 aa25.56■■□□□ 1.68
COL9A3-205ENST00000466192 BCORL1Q5H9F3 1711 aa25.56■■□□□ 1.68
COL9A3-205ENST00000466192 TSPOAP1O95153 1857 aa25.56■■□□□ 1.68
COL9A3-205ENST00000466192 CCDC7Q96M83 1385 aa25.56■■□□□ 1.68
COL9A3-205ENST00000466192 CLTCL1P53675 1640 aa25.55■■□□□ 1.68
COL9A3-205ENST00000466192 EFCAB6Q5THR3 1501 aa25.54■■□□□ 1.68
COL9A3-205ENST00000466192 PPRC1Q5VV67 1664 aaKnown RBP25.54■■□□□ 1.68
COL9A3-205ENST00000466192 DIP2CQ9Y2E4 1556 aa25.54■■□□□ 1.68
COL9A3-205ENST00000466192 ANP32CO43423 234 aa25.52■■□□□ 1.68
COL9A3-205ENST00000466192 LMTK2Q8IWU2 1503 aa25.52■■□□□ 1.68
COL9A3-205ENST00000466192 CARD11Q9BXL7 1154 aa25.52■■□□□ 1.68
COL9A3-205ENST00000466192 KIF7Q2M1P5 1343 aa25.49■■□□□ 1.67
COL9A3-205ENST00000466192 ROCK2O75116 1388 aaKnown RBP25.48■■□□□ 1.67
COL9A3-205ENST00000466192 CNTLNQ9NXG0 1405 aa25.47■■□□□ 1.67
COL9A3-205ENST00000466192 KIF13AQ9H1H9 1805 aa25.45■■□□□ 1.66
COL9A3-205ENST00000466192 YEATS2Q9ULM3 1422 aa25.45■■□□□ 1.66
COL9A3-205ENST00000466192 GGT6Q6P531 493 aa25.45■■□□□ 1.66
COL9A3-205ENST00000466192 CFAP65Q6ZU64 1925 aaKnown RBP25.45■■□□□ 1.66
COL9A3-205ENST00000466192 UGGT1Q9NYU2 1555 aa25.43■■□□□ 1.66
COL9A3-205ENST00000466192 ZMYM4Q5VZL5 1548 aa25.42■■□□□ 1.66
COL9A3-205ENST00000466192 LAMC1P11047 1609 aa25.42■■□□□ 1.66
COL9A3-205ENST00000466192 NBPF1Q3BBV0 1214 aa25.42■■□□□ 1.66
COL9A3-205ENST00000466192 KIF1BO60333 1816 aa25.42■■□□□ 1.66
COL9A3-205ENST00000466192 CCER2I3L3R5 266 aa25.41■■□□□ 1.66
COL9A3-205ENST00000466192 GPRASP1Q5JY77 1395 aa25.41■■□□□ 1.66
COL9A3-205ENST00000466192 MADDQ8WXG6 1647 aa25.4■■□□□ 1.66
COL9A3-205ENST00000466192 ABCC3O15438 1527 aa25.4■■□□□ 1.66
COL9A3-205ENST00000466192 NEURL4Q96JN8 1562 aa25.4■■□□□ 1.66
COL9A3-205ENST00000466192 ST20-MTHFSA0A0A6YYL1 179 aa25.39■■□□□ 1.65
COL9A3-205ENST00000466192 NPATQ14207 1427 aa25.38■■□□□ 1.65
COL9A3-205ENST00000466192 CAMSAP1Q5T5Y3 1602 aa25.38■■□□□ 1.65
COL9A3-205ENST00000466192 WASHC2CQ9Y4E1 1318 aa25.36■■□□□ 1.65
COL9A3-205ENST00000466192 MROH2AA6NES4 1674 aa25.35■■□□□ 1.65
COL9A3-205ENST00000466192 ARID4BQ4LE39 1312 aaPredicted RBP25.34■■□□□ 1.65
COL9A3-205ENST00000466192 SIGLEC1Q9BZZ2 1709 aa25.32■■□□□ 1.64
COL9A3-205ENST00000466192 IFT172Q9UG01 1749 aa25.32■■□□□ 1.64
COL9A3-205ENST00000466192 ZC3H13Q5T200 1668 aaKnown RBP25.31■■□□□ 1.64
COL9A3-205ENST00000466192 STAC3Q96MF2 364 aa25.31■■□□□ 1.64
COL9A3-205ENST00000466192 MYT1Q01538 1121 aa25.3■■□□□ 1.64
COL9A3-205ENST00000466192 POLR3GLQ9BT43 218 aa25.29■■□□□ 1.64
COL9A3-205ENST00000466192 ADGRB3O60242 1522 aa25.27■■□□□ 1.64
COL9A3-205ENST00000466192 KIAA1210Q9ULL0 1709 aa25.25■■□□□ 1.63
COL9A3-205ENST00000466192 IQGAP1P46940 1657 aa25.25■■□□□ 1.63
COL9A3-205ENST00000466192 MYOM2P54296 1465 aa25.24■■□□□ 1.63
COL9A3-205ENST00000466192 NOS1P29475 1434 aa25.24■■□□□ 1.63
COL9A3-205ENST00000466192 REREQ9P2R6 1566 aa25.23■■□□□ 1.63
COL9A3-205ENST00000466192 PRKRIP1Q9H875 184 aaPredicted RBP25.23■■□□□ 1.63
COL9A3-205ENST00000466192 COL17A1Q9UMD9 1497 aaPredicted RBP25.23■■□□□ 1.63
COL9A3-205ENST00000466192 ARHGAP31Q2M1Z3 1444 aa25.22■■□□□ 1.63
COL9A3-205ENST00000466192 SYNMO15061 1565 aa25.22■■□□□ 1.63
COL9A3-205ENST00000466192 PIK3C2BO00750 1634 aa25.21■■□□□ 1.63
COL9A3-205ENST00000466192 PPLO60437 1756 aa25.2■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms