RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 CNTLNQ9NXG0 1405 aa9.59□□□□□ -0.87
SF3B1-206ENST00000462613 CLTCQ00610 1675 aaKnown RBP9.59□□□□□ -0.87
SF3B1-206ENST00000462613 GGT6Q6P531 493 aa9.59□□□□□ -0.87
SF3B1-206ENST00000462613 PPP6R1Q9UPN7 881 aa9.59□□□□□ -0.87
SF3B1-206ENST00000462613 KANK1Q14678 1352 aa9.59□□□□□ -0.87
SF3B1-206ENST00000462613 ANKRD50Q9ULJ7 1429 aa9.58□□□□□ -0.88
SF3B1-206ENST00000462613 SETD1BQ9UPS6 1966 aaKnown RBP9.58□□□□□ -0.88
SF3B1-206ENST00000462613 AEBP2Q6ZN18 517 aaPredicted RBP9.58□□□□□ -0.88
SF3B1-206ENST00000462613 DEPDC5O75140 1603 aa9.57□□□□□ -0.88
SF3B1-206ENST00000462613 CEP152O94986 1710 aa9.57□□□□□ -0.88
SF3B1-206ENST00000462613 CFAP65Q6ZU64 1925 aaKnown RBP9.57□□□□□ -0.88
SF3B1-206ENST00000462613 ACIN1Q9UKV3 1341 aaKnown RBP9.56□□□□□ -0.88
SF3B1-206ENST00000462613 PTPRKQ15262 1439 aa9.56□□□□□ -0.88
SF3B1-206ENST00000462613 KDM5DQ9BY66 1539 aa9.56□□□□□ -0.88
SF3B1-206ENST00000462613 PRDM15P57071 1507 aaPredicted RBP9.56□□□□□ -0.88
SF3B1-206ENST00000462613 C3P01024 1663 aa9.55□□□□□ -0.88
SF3B1-206ENST00000462613 WASHC2CQ9Y4E1 1318 aa9.55□□□□□ -0.88
SF3B1-206ENST00000462613 UNC13BO14795 1591 aa9.54□□□□□ -0.88
SF3B1-206ENST00000462613 KDM4FA0A1W2PPD8 638 aa9.54□□□□□ -0.88
SF3B1-206ENST00000462613 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.54□□□□□ -0.88
SF3B1-206ENST00000462613 HFM1A2PYH4 1435 aa9.54□□□□□ -0.88
SF3B1-206ENST00000462613 PTPRMP28827 1452 aa9.53□□□□□ -0.88
SF3B1-206ENST00000462613 CAMSAP1Q5T5Y3 1602 aa9.53□□□□□ -0.88
SF3B1-206ENST00000462613 NAIPQ13075 1403 aa9.52□□□□□ -0.89
SF3B1-206ENST00000462613 PLPPR3Q6T4P5 718 aa9.52□□□□□ -0.89
SF3B1-206ENST00000462613 MROH1Q8NDA8 1641 aa9.52□□□□□ -0.89
SF3B1-206ENST00000462613 TET3O43151 1660 aa9.51□□□□□ -0.89
SF3B1-206ENST00000462613 TRIM26Q12899 539 aaPredicted RBP9.51□□□□□ -0.89
SF3B1-206ENST00000462613 IQGAP3Q86VI3 1631 aa9.51□□□□□ -0.89
SF3B1-206ENST00000462613 PREX1Q8TCU6 1659 aa9.51□□□□□ -0.89
SF3B1-206ENST00000462613 ABCC3O15438 1527 aa9.51□□□□□ -0.89
SF3B1-206ENST00000462613 ZMYM3Q14202 1370 aa9.5□□□□□ -0.89
SF3B1-206ENST00000462613 SETD5Q9C0A6 1442 aa9.49□□□□□ -0.89
SF3B1-206ENST00000462613 TRIM52Q96A61 297 aa9.49□□□□□ -0.89
SF3B1-206ENST00000462613 NUP155O75694 1391 aa9.49□□□□□ -0.89
SF3B1-206ENST00000462613 PZPP20742 1482 aa9.48□□□□□ -0.89
SF3B1-206ENST00000462613 EFCAB6Q5THR3 1501 aa9.48□□□□□ -0.89
SF3B1-206ENST00000462613 LMTK2Q8IWU2 1503 aa9.48□□□□□ -0.89
SF3B1-206ENST00000462613 VWDEQ8N2E2 1590 aa9.48□□□□□ -0.89
SF3B1-206ENST00000462613 NPATQ14207 1427 aa9.48□□□□□ -0.89
SF3B1-206ENST00000462613 RPRD2Q5VT52 1461 aaKnown RBP9.47□□□□□ -0.89
SF3B1-206ENST00000462613 E9PCH4 1651 aa9.46□□□□□ -0.89
SF3B1-206ENST00000462613 ARHGAP31Q2M1Z3 1444 aa9.46□□□□□ -0.9
SF3B1-206ENST00000462613 UHRF1BP1Q6BDS2 1440 aa9.46□□□□□ -0.9
SF3B1-206ENST00000462613 MYO3AQ8NEV4 1616 aa9.45□□□□□ -0.9
SF3B1-206ENST00000462613 SPHKAPQ2M3C7 1700 aa9.45□□□□□ -0.9
SF3B1-206ENST00000462613 CEBPAP49715 358 aaPredicted RBP9.45□□□□□ -0.9
SF3B1-206ENST00000462613 RAB3GAP2Q9H2M9 1393 aa9.45□□□□□ -0.9
SF3B1-206ENST00000462613 ZNF142P52746 1687 aaPredicted RBP9.45□□□□□ -0.9
SF3B1-206ENST00000462613 SPATA31D1Q6ZQQ2 1576 aa9.44□□□□□ -0.9
SF3B1-206ENST00000462613 KIF1BO60333 1816 aa9.43□□□□□ -0.9
SF3B1-206ENST00000462613 ERVK-7P63135 1459 aa9.43□□□□□ -0.9
SF3B1-206ENST00000462613 TNRQ92752 1358 aa9.43□□□□□ -0.9
SF3B1-206ENST00000462613 HRCP23327 699 aa9.43□□□□□ -0.9
SF3B1-206ENST00000462613 SLC4A1APQ9BWU0 796 aaKnown RBP9.43□□□□□ -0.9
SF3B1-206ENST00000462613 CEP170BQ9Y4F5 1589 aaPredicted RBP9.42□□□□□ -0.9
SF3B1-206ENST00000462613 NLRP1Q9C000 1473 aa9.42□□□□□ -0.9
SF3B1-206ENST00000462613 KDM5AP29375 1690 aaKnown RBP9.42□□□□□ -0.9
SF3B1-206ENST00000462613 STAG3Q9UJ98 1225 aa9.41□□□□□ -0.9
SF3B1-206ENST00000462613 FBXO31Q5XUX0 539 aaPredicted RBP9.4□□□□□ -0.9
SF3B1-206ENST00000462613 SLC52A1Q9NWF4 448 aa9.4□□□□□ -0.9
SF3B1-206ENST00000462613 A2ML1A8K2U0 1454 aa9.4□□□□□ -0.91
SF3B1-206ENST00000462613 UGGT1Q9NYU2 1555 aa9.39□□□□□ -0.91
SF3B1-206ENST00000462613 MYO5BQ9ULV0 1848 aa9.39□□□□□ -0.91
SF3B1-206ENST00000462613 POLR1AO95602 1720 aaPredicted RBP9.39□□□□□ -0.91
SF3B1-206ENST00000462613 UBR1Q8IWV7 1749 aa9.39□□□□□ -0.91
SF3B1-206ENST00000462613 PIK3C2BO00750 1634 aa9.38□□□□□ -0.91
SF3B1-206ENST00000462613 PKD2Q13563 968 aa9.38□□□□□ -0.91
SF3B1-206ENST00000462613 MPHOSPH9Q99550 1183 aa9.38□□□□□ -0.91
SF3B1-206ENST00000462613 LMTK3Q96Q04 1460 aa9.38□□□□□ -0.91
SF3B1-206ENST00000462613 NOS1P29475 1434 aa9.38□□□□□ -0.91
SF3B1-206ENST00000462613 SYNMO15061 1565 aa9.37□□□□□ -0.91
SF3B1-206ENST00000462613 THEMISQ8N1K5 641 aaPredicted RBP9.37□□□□□ -0.91
SF3B1-206ENST00000462613 TRPM2O94759 1503 aa9.36□□□□□ -0.91
SF3B1-206ENST00000462613 ADGRB3O60242 1522 aa9.36□□□□□ -0.91
SF3B1-206ENST00000462613 CCDC144AA2RUR9 1427 aa9.35□□□□□ -0.91
SF3B1-206ENST00000462613 CHGAP10645 457 aaKnown RBP9.35□□□□□ -0.91
SF3B1-206ENST00000462613 HDGFP51858 240 aaKnown RBP9.35□□□□□ -0.91
SF3B1-206ENST00000462613 PCGF6Q9BYE7 350 aa9.35□□□□□ -0.91
SF3B1-206ENST00000462613 PLA2R1Q13018 1463 aa9.34□□□□□ -0.91
SF3B1-206ENST00000462613 PTPRTO14522 1441 aa9.34□□□□□ -0.91
SF3B1-206ENST00000462613 CLTCL1P53675 1640 aa9.34□□□□□ -0.91
SF3B1-206ENST00000462613 IDI1Q13907 227 aa9.33□□□□□ -0.92
SF3B1-206ENST00000462613 DMRT2Q9Y5R5 561 aa9.33□□□□□ -0.92
SF3B1-206ENST00000462613 EID1Q9Y6B2 187 aa9.33□□□□□ -0.92
SF3B1-206ENST00000462613 TMEM131LA2VDJ0 1609 aa9.33□□□□□ -0.92
SF3B1-206ENST00000462613 HSPA2P54652 639 aa9.32□□□□□ -0.92
SF3B1-206ENST00000462613 ANKLE2Q86XL3 938 aa9.32□□□□□ -0.92
SF3B1-206ENST00000462613 STRCQ7RTU9 1775 aa9.32□□□□□ -0.92
SF3B1-206ENST00000462613 ZNF326Q5BKZ1 582 aaKnown RBP9.31□□□□□ -0.92
SF3B1-206ENST00000462613 SLIT1O75093 1534 aa9.31□□□□□ -0.92
SF3B1-206ENST00000462613 IQGAP1P46940 1657 aa9.3□□□□□ -0.92
SF3B1-206ENST00000462613 PPP1R15AO75807 674 aaPredicted RBP9.3□□□□□ -0.92
SF3B1-206ENST00000462613 FOXD1Q16676 465 aa9.3□□□□□ -0.92
SF3B1-206ENST00000462613 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.3□□□□□ -0.92
SF3B1-206ENST00000462613 SCAF11Q99590 1463 aaKnown RBP9.29□□□□□ -0.92
SF3B1-206ENST00000462613 TMEM2Q9UHN6 1383 aa9.29□□□□□ -0.92
SF3B1-206ENST00000462613 PPLO60437 1756 aa9.29□□□□□ -0.92
SF3B1-206ENST00000462613 NEURL4Q96JN8 1562 aa9.29□□□□□ -0.92
SF3B1-206ENST00000462613 TXNDC2Q86VQ3 553 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 265 ms