RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 MROH1Q8NDA8 1641 aa15.23■□□□□ 0.03
UPF2-204ENST00000460569 PRDM15P57071 1507 aaPredicted RBP15.22■□□□□ 0.03
UPF2-204ENST00000460569 RAB3GAP2Q9H2M9 1393 aa15.22■□□□□ 0.03
UPF2-204ENST00000460569 CEP152O94986 1710 aa15.2■□□□□ 0.02
UPF2-204ENST00000460569 MLECQ14165 292 aa15.2■□□□□ 0.02
UPF2-204ENST00000460569 FER1L4A9Z1Z3 1794 aa15.2■□□□□ 0.02
UPF2-204ENST00000460569 ZC3H13Q5T200 1668 aaKnown RBP15.19■□□□□ 0.02
UPF2-204ENST00000460569 GGT6Q6P531 493 aa15.18■□□□□ 0.02
UPF2-204ENST00000460569 IQGAP3Q86VI3 1631 aa15.17■□□□□ 0.02
UPF2-204ENST00000460569 CLTCQ00610 1675 aaKnown RBP15.17■□□□□ 0.02
UPF2-204ENST00000460569 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.17■□□□□ 0.02
UPF2-204ENST00000460569 KDM5DQ9BY66 1539 aa15.17■□□□□ 0.02
UPF2-204ENST00000460569 FAM135AQ9P2D6 1515 aa15.17■□□□□ 0.02
UPF2-204ENST00000460569 ADAMTSL3P82987 1691 aa15.16■□□□□ 0.02
UPF2-204ENST00000460569 VWDEQ8N2E2 1590 aa15.16■□□□□ 0.02
UPF2-204ENST00000460569 KANK1Q14678 1352 aa15.16■□□□□ 0.02
UPF2-204ENST00000460569 MADDQ8WXG6 1647 aa15.16■□□□□ 0.02
UPF2-204ENST00000460569 ABCC3O15438 1527 aa15.15■□□□□ 0.02
UPF2-204ENST00000460569 RIMS1Q86UR5 1692 aaKnown RBP15.15■□□□□ 0.02
UPF2-204ENST00000460569 CAMSAP1Q5T5Y3 1602 aa15.14■□□□□ 0.01
UPF2-204ENST00000460569 TRIM52Q96A61 297 aa15.14■□□□□ 0.01
UPF2-204ENST00000460569 NUP155O75694 1391 aa15.13■□□□□ 0.01
UPF2-204ENST00000460569 MROH2AA6NES4 1674 aa15.13■□□□□ 0.01
UPF2-204ENST00000460569 TET3O43151 1660 aa15.13■□□□□ 0.01
UPF2-204ENST00000460569 LMTK2Q8IWU2 1503 aa15.12■□□□□ 0.01
UPF2-204ENST00000460569 ESF1Q9H501 851 aaKnown RBP15.11■□□□□ 0.01
UPF2-204ENST00000460569 PZPP20742 1482 aa15.11■□□□□ 0.01
UPF2-204ENST00000460569 EFCAB6Q5THR3 1501 aa15.11■□□□□ 0.01
UPF2-204ENST00000460569 ACIN1Q9UKV3 1341 aaKnown RBP15.11■□□□□ 0.01
UPF2-204ENST00000460569 CNTLNQ9NXG0 1405 aa15.1■□□□□ 0.01
UPF2-204ENST00000460569 HRCP23327 699 aa15.1■□□□□ 0.01
UPF2-204ENST00000460569 PPP6R1Q9UPN7 881 aa15.1■□□□□ 0.01
UPF2-204ENST00000460569 WASHC2CQ9Y4E1 1318 aa15.1■□□□□ 0.01
UPF2-204ENST00000460569 E9PCH4 1651 aa15.09■□□□□ 0.01
UPF2-204ENST00000460569 C3P01024 1663 aa15.08■□□□□ 0
UPF2-204ENST00000460569 SLC4A1APQ9BWU0 796 aaKnown RBP15.05■□□□□ -0
UPF2-204ENST00000460569 CFAP65Q6ZU64 1925 aaKnown RBP15.05■□□□□ -0
UPF2-204ENST00000460569 PREX1Q8TCU6 1659 aa15.04■□□□□ -0
UPF2-204ENST00000460569 SPHKAPQ2M3C7 1700 aa15.03■□□□□ -0
UPF2-204ENST00000460569 NPATQ14207 1427 aa15.03■□□□□ -0
UPF2-204ENST00000460569 MPHOSPH9Q99550 1183 aa15.03■□□□□ -0
UPF2-204ENST00000460569 RPRD2Q5VT52 1461 aaKnown RBP15.02■□□□□ -0
UPF2-204ENST00000460569 ARHGAP31Q2M1Z3 1444 aa15.02■□□□□ -0
UPF2-204ENST00000460569 ZMYM3Q14202 1370 aa15.02■□□□□ -0
UPF2-204ENST00000460569 PTPRMP28827 1452 aa15.01□□□□□ -0.01
UPF2-204ENST00000460569 PKD2Q13563 968 aa15.01□□□□□ -0.01
UPF2-204ENST00000460569 KDM4FA0A1W2PPD8 638 aa15□□□□□ -0.01
UPF2-204ENST00000460569 PLPPR3Q6T4P5 718 aa15□□□□□ -0.01
UPF2-204ENST00000460569 ERVK-7P63135 1459 aa15□□□□□ -0.01
UPF2-204ENST00000460569 DHX57Q6P158 1386 aaKnown RBP14.99□□□□□ -0.01
UPF2-204ENST00000460569 SPATA31D1Q6ZQQ2 1576 aa14.99□□□□□ -0.01
UPF2-204ENST00000460569 CEBPAP49715 358 aaPredicted RBP14.98□□□□□ -0.01
UPF2-204ENST00000460569 SYNMO15061 1565 aa14.98□□□□□ -0.01
UPF2-204ENST00000460569 FOXD1Q16676 465 aa14.97□□□□□ -0.01
UPF2-204ENST00000460569 TRPM2O94759 1503 aa14.97□□□□□ -0.01
UPF2-204ENST00000460569 MYO3AQ8NEV4 1616 aa14.95□□□□□ -0.02
UPF2-204ENST00000460569 NOS1P29475 1434 aa14.95□□□□□ -0.02
UPF2-204ENST00000460569 FBXO31Q5XUX0 539 aaPredicted RBP14.95□□□□□ -0.02
UPF2-204ENST00000460569 CLTCL1P53675 1640 aa14.94□□□□□ -0.02
UPF2-204ENST00000460569 UGGT1Q9NYU2 1555 aa14.94□□□□□ -0.02
UPF2-204ENST00000460569 PTPRTO14522 1441 aa14.93□□□□□ -0.02
UPF2-204ENST00000460569 PIK3C2BO00750 1634 aa14.93□□□□□ -0.02
UPF2-204ENST00000460569 TNRQ92752 1358 aa14.93□□□□□ -0.02
UPF2-204ENST00000460569 PLA2R1Q13018 1463 aa14.92□□□□□ -0.02
UPF2-204ENST00000460569 ZNF142P52746 1687 aaPredicted RBP14.9□□□□□ -0.02
UPF2-204ENST00000460569 KIF1BO60333 1816 aa14.9□□□□□ -0.02
UPF2-204ENST00000460569 ANKRD30BQ9BXX2 1392 aa14.9□□□□□ -0.02
UPF2-204ENST00000460569 CCDC144AA2RUR9 1427 aa14.9□□□□□ -0.02
UPF2-204ENST00000460569 SETD1BQ9UPS6 1966 aaKnown RBP14.89□□□□□ -0.03
UPF2-204ENST00000460569 CCER1Q8TC90 406 aaPredicted RBP14.89□□□□□ -0.03
UPF2-204ENST00000460569 NLRP1Q9C000 1473 aa14.89□□□□□ -0.03
UPF2-204ENST00000460569 CEP170BQ9Y4F5 1589 aaPredicted RBP14.88□□□□□ -0.03
UPF2-204ENST00000460569 MYO5BQ9ULV0 1848 aa14.87□□□□□ -0.03
UPF2-204ENST00000460569 ADGRB3O60242 1522 aa14.87□□□□□ -0.03
UPF2-204ENST00000460569 UBR1Q8IWV7 1749 aa14.86□□□□□ -0.03
UPF2-204ENST00000460569 UHRF1BP1Q6BDS2 1440 aa14.86□□□□□ -0.03
UPF2-204ENST00000460569 KDM5AP29375 1690 aaKnown RBP14.86□□□□□ -0.03
UPF2-204ENST00000460569 A2ML1A8K2U0 1454 aa14.85□□□□□ -0.03
UPF2-204ENST00000460569 SLC52A1Q9NWF4 448 aa14.85□□□□□ -0.03
UPF2-204ENST00000460569 TMEM131LA2VDJ0 1609 aa14.84□□□□□ -0.03
UPF2-204ENST00000460569 IDI1Q13907 227 aa14.83□□□□□ -0.04
UPF2-204ENST00000460569 CLSPNQ9HAW4 1339 aa14.83□□□□□ -0.04
UPF2-204ENST00000460569 CHGAP10645 457 aaKnown RBP14.82□□□□□ -0.04
UPF2-204ENST00000460569 STAG3Q9UJ98 1225 aa14.81□□□□□ -0.04
UPF2-204ENST00000460569 SIN3AQ96ST3 1273 aa14.8□□□□□ -0.04
UPF2-204ENST00000460569 NEURL4Q96JN8 1562 aa14.8□□□□□ -0.04
UPF2-204ENST00000460569 NEUROD1Q13562 356 aa14.79□□□□□ -0.04
UPF2-204ENST00000460569 SPATA31E1Q6ZUB1 1445 aa14.79□□□□□ -0.04
UPF2-204ENST00000460569 LMTK3Q96Q04 1460 aa14.79□□□□□ -0.04
UPF2-204ENST00000460569 IFT172Q9UG01 1749 aa14.78□□□□□ -0.04
UPF2-204ENST00000460569 PPLO60437 1756 aa14.78□□□□□ -0.04
UPF2-204ENST00000460569 ZNF326Q5BKZ1 582 aaKnown RBP14.76□□□□□ -0.05
UPF2-204ENST00000460569 NEXMIFQ5QGS0 1516 aa14.76□□□□□ -0.05
UPF2-204ENST00000460569 POLR1AO95602 1720 aaPredicted RBP14.75□□□□□ -0.05
UPF2-204ENST00000460569 RGL3Q3MIN7 710 aa14.75□□□□□ -0.05
UPF2-204ENST00000460569 AEBP2Q6ZN18 517 aaPredicted RBP14.75□□□□□ -0.05
UPF2-204ENST00000460569 SLIT1O75093 1534 aa14.75□□□□□ -0.05
UPF2-204ENST00000460569 THEMISQ8N1K5 641 aaPredicted RBP14.74□□□□□ -0.05
UPF2-204ENST00000460569 RIMS2Q9UQ26 1411 aa14.74□□□□□ -0.05
UPF2-204ENST00000460569 TONSLQ96HA7 1378 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms