RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 UHRF1BP1Q6BDS2 1440 aa28.7■■■□□ 2.19
USP39-209ENST00000458268 EIF2AK4Q9P2K8 1649 aaKnown RBP28.69■■■□□ 2.18
USP39-209ENST00000458268 ITGAEP38570 1179 aa28.69■■■□□ 2.18
USP39-209ENST00000458268 SETD1BQ9UPS6 1966 aaKnown RBP28.69■■■□□ 2.18
USP39-209ENST00000458268 KDM5DQ9BY66 1539 aa28.69■■■□□ 2.18
USP39-209ENST00000458268 WASHC2CQ9Y4E1 1318 aa28.69■■■□□ 2.18
USP39-209ENST00000458268 ANKRD30AQ9BXX3 1397 aa28.67■■■□□ 2.18
USP39-209ENST00000458268 RNF17Q9BXT8 1623 aaKnown RBP28.66■■■□□ 2.18
USP39-209ENST00000458268 PPP6R1Q9UPN7 881 aa28.65■■■□□ 2.18
USP39-209ENST00000458268 CEP152O94986 1710 aa28.63■■■□□ 2.17
USP39-209ENST00000458268 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.62■■■□□ 2.173e-6■□□□□ 9.9
USP39-209ENST00000458268 ERBINQ96RT1 1412 aa28.6■■■□□ 2.17
USP39-209ENST00000458268 NPATQ14207 1427 aa28.59■■■□□ 2.17
USP39-209ENST00000458268 PTPRKQ15262 1439 aa28.59■■■□□ 2.17
USP39-209ENST00000458268 MROH1Q8NDA8 1641 aa28.58■■■□□ 2.17
USP39-209ENST00000458268 NCOA1Q15788 1441 aa28.58■■■□□ 2.17
USP39-209ENST00000458268 MYO3AQ8NEV4 1616 aa28.58■■■□□ 2.17
USP39-209ENST00000458268 FAM135AQ9P2D6 1515 aa28.57■■■□□ 2.16
USP39-209ENST00000458268 ZC3H13Q5T200 1668 aaKnown RBP28.57■■■□□ 2.16
USP39-209ENST00000458268 ABCC3O15438 1527 aa28.56■■■□□ 2.16
USP39-209ENST00000458268 ADGRL2O95490 1459 aa28.56■■■□□ 2.16
USP39-209ENST00000458268 CFAP65Q6ZU64 1925 aaKnown RBP28.55■■■□□ 2.16
USP39-209ENST00000458268 FBXO31Q5XUX0 539 aaPredicted RBP28.55■■■□□ 2.16
USP39-209ENST00000458268 CAMSAP1Q5T5Y3 1602 aa28.52■■■□□ 2.16
USP39-209ENST00000458268 PZPP20742 1482 aa28.52■■■□□ 2.16
USP39-209ENST00000458268 PRDM15P57071 1507 aaPredicted RBP28.5■■■□□ 2.15
USP39-209ENST00000458268 KANK1Q14678 1352 aa28.5■■■□□ 2.15
USP39-209ENST00000458268 TNRQ92752 1358 aa28.49■■■□□ 2.15
USP39-209ENST00000458268 DEPDC5O75140 1603 aa28.48■■■□□ 2.15
USP39-209ENST00000458268 CEP170BQ9Y4F5 1589 aaPredicted RBP28.48■■■□□ 2.15
USP39-209ENST00000458268 ZNF142P52746 1687 aaPredicted RBP28.47■■■□□ 2.15
USP39-209ENST00000458268 ANKRD50Q9ULJ7 1429 aa28.46■■■□□ 2.15
USP39-209ENST00000458268 STRCQ7RTU9 1775 aa28.45■■■□□ 2.14
USP39-209ENST00000458268 RRBP1Q9P2E9 1410 aaKnown RBP28.43■■■□□ 2.14
USP39-209ENST00000458268 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.41■■■□□ 2.141e-6■□□□□ 11
USP39-209ENST00000458268 A2ML1A8K2U0 1454 aa28.39■■■□□ 2.13
USP39-209ENST00000458268 ROCK1Q13464 1354 aa28.38■■■□□ 2.13
USP39-209ENST00000458268 ERVK-7P63135 1459 aa28.38■■■□□ 2.13
USP39-209ENST00000458268 SPATA31D1Q6ZQQ2 1576 aa28.34■■■□□ 2.13
USP39-209ENST00000458268 NCKAP5LQ9HCH0 1330 aa28.34■■■□□ 2.13
USP39-209ENST00000458268 VWDEQ8N2E2 1590 aa28.32■■■□□ 2.12
USP39-209ENST00000458268 DMRT2Q9Y5R5 561 aa28.31■■■□□ 2.12
USP39-209ENST00000458268 UNC13BO14795 1591 aa28.31■■■□□ 2.12
USP39-209ENST00000458268 NLRP1Q9C000 1473 aa28.3■■■□□ 2.12
USP39-209ENST00000458268 UGGT1Q9NYU2 1555 aa28.29■■■□□ 2.12
USP39-209ENST00000458268 EFCAB6Q5THR3 1501 aa28.28■■■□□ 2.12
USP39-209ENST00000458268 LMTK2Q8IWU2 1503 aa28.28■■■□□ 2.12
USP39-209ENST00000458268 ARHGAP31Q2M1Z3 1444 aa28.27■■■□□ 2.12
USP39-209ENST00000458268 POLR1AO95602 1720 aaPredicted RBP28.25■■■□□ 2.11
USP39-209ENST00000458268 PLA2R1Q13018 1463 aa28.25■■■□□ 2.11
USP39-209ENST00000458268 TET3O43151 1660 aa28.25■■■□□ 2.11
USP39-209ENST00000458268 GCC2Q8IWJ2 1684 aa28.23■■■□□ 2.11
USP39-209ENST00000458268 THEMISQ8N1K5 641 aaPredicted RBP28.22■■■□□ 2.11
USP39-209ENST00000458268 NUP155O75694 1391 aa28.22■■■□□ 2.11
USP39-209ENST00000458268 PTPRTO14522 1441 aa28.21■■■□□ 2.11
USP39-209ENST00000458268 PKD2Q13563 968 aa28.2■■■□□ 2.1
USP39-209ENST00000458268 STAG3Q9UJ98 1225 aa28.2■■■□□ 2.1
USP39-209ENST00000458268 IQGAP3Q86VI3 1631 aa28.2■■■□□ 2.1
USP39-209ENST00000458268 UBR1Q8IWV7 1749 aa28.2■■■□□ 2.1
USP39-209ENST00000458268 PIK3C2BO00750 1634 aa28.19■■■□□ 2.1
USP39-209ENST00000458268 SYNMO15061 1565 aa28.18■■■□□ 2.1
USP39-209ENST00000458268 NAIPQ13075 1403 aa28.17■■■□□ 2.1
USP39-209ENST00000458268 E9PCH4 1651 aa28.16■■■□□ 2.1
USP39-209ENST00000458268 ANKLE2Q86XL3 938 aa28.15■■■□□ 2.1
USP39-209ENST00000458268 NEURL4Q96JN8 1562 aa28.12■■■□□ 2.09
USP39-209ENST00000458268 TRIM52Q96A61 297 aa28.12■■■□□ 2.09
USP39-209ENST00000458268 RPRD2Q5VT52 1461 aaKnown RBP28.11■■■□□ 2.09
USP39-209ENST00000458268 ILDR1Q86SU0 546 aaPredicted RBP28.11■■■□□ 2.09
USP39-209ENST00000458268 NOS1P29475 1434 aa28.1■■■□□ 2.09
USP39-209ENST00000458268 IDI1Q13907 227 aa28.09■■■□□ 2.09
USP39-209ENST00000458268 HFM1A2PYH4 1435 aa28.09■■■□□ 2.09
USP39-209ENST00000458268 CERKQ8TCT0 537 aa28.08■■■□□ 2.09
USP39-209ENST00000458268 ZNF335Q9H4Z2 1342 aaPredicted RBP28.07■■■□□ 2.08
USP39-209ENST00000458268 CHGAP10645 457 aaKnown RBP28.06■■■□□ 2.08
USP39-209ENST00000458268 NPHP4O75161 1426 aaPredicted RBP28.05■■■□□ 2.08
USP39-209ENST00000458268 MYO5BQ9ULV0 1848 aa28.05■■■□□ 2.08
USP39-209ENST00000458268 IQGAP1P46940 1657 aa28.04■■■□□ 2.08
USP39-209ENST00000458268 ADGRB3O60242 1522 aa28.04■■■□□ 2.08
USP39-209ENST00000458268 TXNDC2Q86VQ3 553 aa28.02■■■□□ 2.08
USP39-209ENST00000458268 SENP3Q9H4L4 574 aaPredicted RBP28.01■■■□□ 2.07
USP39-209ENST00000458268 SLC52A1Q9NWF4 448 aa28.01■■■□□ 2.07
USP39-209ENST00000458268 EID1Q9Y6B2 187 aa28.01■■■□□ 2.07
USP39-209ENST00000458268 SCAF11Q99590 1463 aaKnown RBP28.01■■■□□ 2.07
USP39-209ENST00000458268 SPHKAPQ2M3C7 1700 aa28■■■□□ 2.07
USP39-209ENST00000458268 LTBP4Q8N2S1 1624 aa28■■■□□ 2.07
USP39-209ENST00000458268 KDM5AP29375 1690 aaKnown RBP27.98■■■□□ 2.07
USP39-209ENST00000458268 LTKP29376 864 aa27.98■■■□□ 2.07
USP39-209ENST00000458268 FBXO41Q8TF61 875 aa27.98■■■□□ 2.07
USP39-209ENST00000458268 SLIT1O75093 1534 aa27.97■■■□□ 2.07
USP39-209ENST00000458268 TMEM2Q9UHN6 1383 aa27.97■■■□□ 2.07
USP39-209ENST00000458268 ARHGAP23Q9P227 1491 aa27.96■■■□□ 2.07
USP39-209ENST00000458268 MED14O60244 1454 aa27.95■■■□□ 2.07
USP39-209ENST00000458268 BCANQ96GW7 911 aa27.95■■■□□ 2.06
USP39-209ENST00000458268 SLC4A1APQ9BWU0 796 aaKnown RBP27.93■■■□□ 2.06
USP39-209ENST00000458268 TMEM131LA2VDJ0 1609 aa27.92■■■□□ 2.06
USP39-209ENST00000458268 PPP1R15AO75807 674 aaPredicted RBP27.91■■■□□ 2.06
USP39-209ENST00000458268 NUTM2DQ5VT03 806 aaPredicted RBP27.88■■■□□ 2.05
USP39-209ENST00000458268 RIMS2Q9UQ26 1411 aa27.87■■■□□ 2.05
USP39-209ENST00000458268 SETD5Q9C0A6 1442 aa27.85■■■□□ 2.05
USP39-209ENST00000458268 CLTCL1P53675 1640 aa27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms