RNA–Protein interactions for RNA: ENST00000454852.6

TRAF4-206, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 672 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-206ENST00000454852 KDM5DQ9BY66 1539 aa16.8■□□□□ 0.28
TRAF4-206ENST00000454852 PRDM15P57071 1507 aaPredicted RBP16.8■□□□□ 0.28
TRAF4-206ENST00000454852 SIGLEC1Q9BZZ2 1709 aa16.79■□□□□ 0.28
TRAF4-206ENST00000454852 MROH1Q8NDA8 1641 aa16.79■□□□□ 0.28
TRAF4-206ENST00000454852 FAM135AQ9P2D6 1515 aa16.79■□□□□ 0.28
TRAF4-206ENST00000454852 VWDEQ8N2E2 1590 aa16.78■□□□□ 0.28
TRAF4-206ENST00000454852 IQGAP3Q86VI3 1631 aa16.75■□□□□ 0.27
TRAF4-206ENST00000454852 PPP6R1Q9UPN7 881 aa16.75■□□□□ 0.27
TRAF4-206ENST00000454852 KIF3BO15066 747 aa16.74■□□□□ 0.27
TRAF4-206ENST00000454852 LMTK2Q8IWU2 1503 aa16.74■□□□□ 0.27
TRAF4-206ENST00000454852 ZC3H13Q5T200 1668 aaKnown RBP16.72■□□□□ 0.27
TRAF4-206ENST00000454852 PZPP20742 1482 aa16.71■□□□□ 0.27
TRAF4-206ENST00000454852 NUP155O75694 1391 aa16.7■□□□□ 0.26
TRAF4-206ENST00000454852 KANK1Q14678 1352 aa16.69■□□□□ 0.26
TRAF4-206ENST00000454852 ABCC3O15438 1527 aa16.68■□□□□ 0.26
TRAF4-206ENST00000454852 TET3O43151 1660 aa16.68■□□□□ 0.26
TRAF4-206ENST00000454852 DHX57Q6P158 1386 aaKnown RBP16.66■□□□□ 0.26
TRAF4-206ENST00000454852 ARHGAP31Q2M1Z3 1444 aa16.65■□□□□ 0.26
TRAF4-206ENST00000454852 GGT6Q6P531 493 aa16.65■□□□□ 0.26
TRAF4-206ENST00000454852 TRIM52Q96A61 297 aa16.65■□□□□ 0.26
TRAF4-206ENST00000454852 EFCAB6Q5THR3 1501 aa16.65■□□□□ 0.26
TRAF4-206ENST00000454852 CNTLNQ9NXG0 1405 aa16.64■□□□□ 0.25
TRAF4-206ENST00000454852 MPHOSPH9Q99550 1183 aa16.64■□□□□ 0.25
TRAF4-206ENST00000454852 CEP152O94986 1710 aa16.64■□□□□ 0.25
TRAF4-206ENST00000454852 ADAMTSL3P82987 1691 aa16.63■□□□□ 0.25
TRAF4-206ENST00000454852 RPRD2Q5VT52 1461 aaKnown RBP16.63■□□□□ 0.25
TRAF4-206ENST00000454852 ARID4BQ4LE39 1312 aaPredicted RBP16.63■□□□□ 0.25
TRAF4-206ENST00000454852 CAMSAP1Q5T5Y3 1602 aa16.63■□□□□ 0.25
TRAF4-206ENST00000454852 MROH2AA6NES4 1674 aa16.62■□□□□ 0.25
TRAF4-206ENST00000454852 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.62■□□□□ 0.259e-7■■■□□ 14.9
TRAF4-206ENST00000454852 WASHC2CQ9Y4E1 1318 aa16.62■□□□□ 0.25
TRAF4-206ENST00000454852 SLC4A1APQ9BWU0 796 aaKnown RBP16.61■□□□□ 0.25
TRAF4-206ENST00000454852 E9PCH4 1651 aa16.6■□□□□ 0.25
TRAF4-206ENST00000454852 CLSPNQ9HAW4 1339 aa16.6■□□□□ 0.25
TRAF4-206ENST00000454852 CLTCQ00610 1675 aaKnown RBP16.59■□□□□ 0.25
TRAF4-206ENST00000454852 FER1L4A9Z1Z3 1794 aa16.59■□□□□ 0.25
TRAF4-206ENST00000454852 NPATQ14207 1427 aa16.58■□□□□ 0.24
TRAF4-206ENST00000454852 PTPRTO14522 1441 aa16.57■□□□□ 0.24
TRAF4-206ENST00000454852 PKD2Q13563 968 aa16.57■□□□□ 0.24
TRAF4-206ENST00000454852 MADDQ8WXG6 1647 aa16.56■□□□□ 0.24
TRAF4-206ENST00000454852 MLECQ14165 292 aa16.56■□□□□ 0.24
TRAF4-206ENST00000454852 ANKRD30BQ9BXX2 1392 aa16.55■□□□□ 0.24
TRAF4-206ENST00000454852 NOS1P29475 1434 aa16.54■□□□□ 0.24
TRAF4-206ENST00000454852 ZMYM3Q14202 1370 aa16.54■□□□□ 0.24
TRAF4-206ENST00000454852 SPATA31D1Q6ZQQ2 1576 aa16.53■□□□□ 0.24
TRAF4-206ENST00000454852 ESF1Q9H501 851 aaKnown RBP16.53■□□□□ 0.24
TRAF4-206ENST00000454852 TRPM2O94759 1503 aa16.53■□□□□ 0.24
TRAF4-206ENST00000454852 PLA2R1Q13018 1463 aa16.53■□□□□ 0.24
TRAF4-206ENST00000454852 SPHKAPQ2M3C7 1700 aa16.53■□□□□ 0.24
TRAF4-206ENST00000454852 C3P01024 1663 aa16.51■□□□□ 0.23
TRAF4-206ENST00000454852 PREX1Q8TCU6 1659 aa16.51■□□□□ 0.23
TRAF4-206ENST00000454852 RIMS1Q86UR5 1692 aaKnown RBP16.5■□□□□ 0.23
TRAF4-206ENST00000454852 ERVK-7P63135 1459 aa16.5■□□□□ 0.23
TRAF4-206ENST00000454852 CCER1Q8TC90 406 aaPredicted RBP16.49■□□□□ 0.23
TRAF4-206ENST00000454852 PIK3C2BO00750 1634 aa16.48■□□□□ 0.23
TRAF4-206ENST00000454852 SYNMO15061 1565 aa16.47■□□□□ 0.23
TRAF4-206ENST00000454852 FOXD1Q16676 465 aa16.47■□□□□ 0.23
TRAF4-206ENST00000454852 NEURL4Q96JN8 1562 aa16.47■□□□□ 0.23
TRAF4-206ENST00000454852 PTPRMP28827 1452 aa16.45■□□□□ 0.22
TRAF4-206ENST00000454852 SLC52A1Q9NWF4 448 aa16.44■□□□□ 0.22
TRAF4-206ENST00000454852 CCDC144AA2RUR9 1427 aa16.44■□□□□ 0.22
TRAF4-206ENST00000454852 CLTCL1P53675 1640 aa16.43■□□□□ 0.22
TRAF4-206ENST00000454852 KDM4FA0A1W2PPD8 638 aa16.42■□□□□ 0.22
TRAF4-206ENST00000454852 FBXO31Q5XUX0 539 aaPredicted RBP16.42■□□□□ 0.22
TRAF4-206ENST00000454852 KDM5AP29375 1690 aaKnown RBP16.41■□□□□ 0.22
TRAF4-206ENST00000454852 NLRP1Q9C000 1473 aa16.41■□□□□ 0.22
TRAF4-206ENST00000454852 TNRQ92752 1358 aa16.4■□□□□ 0.22
TRAF4-206ENST00000454852 TIMELESSQ9UNS1 1208 aa16.4■□□□□ 0.22
TRAF4-206ENST00000454852 CFAP65Q6ZU64 1925 aaKnown RBP16.4■□□□□ 0.22
TRAF4-206ENST00000454852 UGGT1Q9NYU2 1555 aa16.39■□□□□ 0.21
TRAF4-206ENST00000454852 SPATA31E1Q6ZUB1 1445 aa16.39■□□□□ 0.21
TRAF4-206ENST00000454852 CEBPAP49715 358 aaPredicted RBP16.38■□□□□ 0.21
TRAF4-206ENST00000454852 ADGRB3O60242 1522 aa16.38■□□□□ 0.21
TRAF4-206ENST00000454852 SETD1BQ9UPS6 1966 aaKnown RBP16.38■□□□□ 0.21
TRAF4-206ENST00000454852 SIN3AQ96ST3 1273 aa16.37■□□□□ 0.21
TRAF4-206ENST00000454852 KIF1BO60333 1816 aa16.37■□□□□ 0.21
TRAF4-206ENST00000454852 IDI1Q13907 227 aa16.36■□□□□ 0.21
TRAF4-206ENST00000454852 TMEM131LA2VDJ0 1609 aa16.36■□□□□ 0.21
TRAF4-206ENST00000454852 MYO3AQ8NEV4 1616 aa16.36■□□□□ 0.21
TRAF4-206ENST00000454852 ZNF142P52746 1687 aaPredicted RBP16.34■□□□□ 0.21
TRAF4-206ENST00000454852 A2ML1A8K2U0 1454 aa16.33■□□□□ 0.2
TRAF4-206ENST00000454852 UBR1Q8IWV7 1749 aa16.32■□□□□ 0.2
TRAF4-206ENST00000454852 CEP170BQ9Y4F5 1589 aaPredicted RBP16.31■□□□□ 0.2
TRAF4-206ENST00000454852 STAC3Q96MF2 364 aa16.31■□□□□ 0.2
TRAF4-206ENST00000454852 RPGRIP1LQ68CZ1 1315 aa16.3■□□□□ 0.2
TRAF4-206ENST00000454852 TONSLQ96HA7 1378 aa16.29■□□□□ 0.2
TRAF4-206ENST00000454852 IFT172Q9UG01 1749 aa16.29■□□□□ 0.2
TRAF4-206ENST00000454852 NEUROD1Q13562 356 aa16.29■□□□□ 0.2
TRAF4-206ENST00000454852 ZEB1P37275 1124 aaPredicted RBP16.28■□□□□ 0.2
TRAF4-206ENST00000454852 UHRF1BP1Q6BDS2 1440 aa16.28■□□□□ 0.2
TRAF4-206ENST00000454852 MYO5BQ9ULV0 1848 aa16.27■□□□□ 0.2
TRAF4-206ENST00000454852 ARHGAP23Q9P227 1491 aa16.27■□□□□ 0.19
TRAF4-206ENST00000454852 ZFYVE9O95405 1425 aa16.27■□□□□ 0.19
TRAF4-206ENST00000454852 PPLO60437 1756 aa16.26■□□□□ 0.19
TRAF4-206ENST00000454852 SLIT1O75093 1534 aa16.26■□□□□ 0.19
TRAF4-206ENST00000454852 NEXMIFQ5QGS0 1516 aa16.26■□□□□ 0.19
TRAF4-206ENST00000454852 L3MBTL2Q969R5 705 aa16.26■□□□□ 0.19
TRAF4-206ENST00000454852 MYOM2P54296 1465 aa16.26■□□□□ 0.19
TRAF4-206ENST00000454852 NRXN1Q9ULB1 1477 aa16.24■□□□□ 0.19
TRAF4-206ENST00000454852 TMEM2Q9UHN6 1383 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms