RNA–Protein interactions for RNA: ENST00000454852.6

TRAF4-206, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 672 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-206ENST00000454852 NISCHQ9Y2I1 1504 aa26.67■■□□□ 1.86
TRAF4-206ENST00000454852 CCDC180Q9P1Z9 1646 aa23.56■■□□□ 1.36
TRAF4-206ENST00000454852 ABCC9O60706 1549 aa22.47■■□□□ 1.19
TRAF4-206ENST00000454852 ZCCHC6Q5VYS8 1495 aaKnown RBP22.34■■□□□ 1.17
TRAF4-206ENST00000454852 DCAF1Q9Y4B6 1507 aa22.18■■□□□ 1.14
TRAF4-206ENST00000454852 MYO15BQ96JP2 1530 aa22.13■■□□□ 1.13
TRAF4-206ENST00000454852 NACADO15069 1562 aa22.03■■□□□ 1.12
TRAF4-206ENST00000454852 RB1CC1Q8TDY2 1594 aa21.91■■□□□ 1.1
TRAF4-206ENST00000454852 DCAF8L2P0C7V8 631 aa21.88■■□□□ 1.09
TRAF4-206ENST00000454852 SCRIBQ14160 1630 aa21.4■■□□□ 1.02
TRAF4-206ENST00000454852 UNC13AQ9UPW8 1703 aa21.4■■□□□ 1.02
TRAF4-206ENST00000454852 BICRAQ9NZM4 1560 aa21.23■□□□□ 0.99
TRAF4-206ENST00000454852 SHROOM4Q9ULL8 1493 aa21.15■□□□□ 0.98
TRAF4-206ENST00000454852 PABPN1Q86U42 306 aaKnown RBP eCLIP21.02■□□□□ 0.96
TRAF4-206ENST00000454852 CECR2Q9BXF3 1484 aa20.67■□□□□ 0.9
TRAF4-206ENST00000454852 BAZ1AQ9NRL2 1556 aaPredicted RBP20.64■□□□□ 0.9
TRAF4-206ENST00000454852 EIF4G1Q04637 1599 aaKnown RBP20.62■□□□□ 0.89
TRAF4-206ENST00000454852 SMARCA4P51532 1647 aa20.59■□□□□ 0.89
TRAF4-206ENST00000454852 MROH2BQ7Z745 1585 aa20.52■□□□□ 0.88
TRAF4-206ENST00000454852 RSF1Q96T23 1441 aaPredicted RBP20.47■□□□□ 0.87
TRAF4-206ENST00000454852 PEG3Q9GZU2 1588 aa20.46■□□□□ 0.87
TRAF4-206ENST00000454852 CC2D2AQ9P2K1 1620 aa20.4■□□□□ 0.86
TRAF4-206ENST00000454852 SMARCA2P51531 1590 aa20.38■□□□□ 0.85
TRAF4-206ENST00000454852 ATAD2BQ9ULI0 1458 aa20.37■□□□□ 0.85
TRAF4-206ENST00000454852 NCAPD3P42695 1498 aa20.32■□□□□ 0.84
TRAF4-206ENST00000454852 WIZO95785 1651 aa20.31■□□□□ 0.84
TRAF4-206ENST00000454852 HMGXB3Q12766 1538 aa20.27■□□□□ 0.83
TRAF4-206ENST00000454852 DNAJC5BQ9UF47 199 aa20.2■□□□□ 0.82
TRAF4-206ENST00000454852 BAZ1BQ9UIG0 1483 aaKnown RBP20.19■□□□□ 0.82
TRAF4-206ENST00000454852 TOP2AP11388 1531 aaKnown RBP20.17■□□□□ 0.82
TRAF4-206ENST00000454852 SUPT5HO00267 1087 aaKnown RBP20.13■□□□□ 0.81
TRAF4-206ENST00000454852 CCDC88BA6NC98 1476 aa19.9■□□□□ 0.78
TRAF4-206ENST00000454852 CFTRP13569 1480 aa19.72■□□□□ 0.75
TRAF4-206ENST00000454852 CADPSQ9ULU8 1353 aa19.71■□□□□ 0.75
TRAF4-206ENST00000454852 LAMC3Q9Y6N6 1575 aa19.7■□□□□ 0.74
TRAF4-206ENST00000454852 PRDM2Q13029 1718 aa19.61■□□□□ 0.73
TRAF4-206ENST00000454852 NESP48681 1621 aa19.58■□□□□ 0.73
TRAF4-206ENST00000454852 PDS5BQ9NTI5 1447 aa19.51■□□□□ 0.71
TRAF4-206ENST00000454852 FANCD2Q9BXW9 1451 aa19.46■□□□□ 0.71
TRAF4-206ENST00000454852 KIF21AQ7Z4S6 1674 aa19.4■□□□□ 0.7
TRAF4-206ENST00000454852 CEP164Q9UPV0 1460 aa19.39■□□□□ 0.69
TRAF4-206ENST00000454852 ERCC6Q03468 1493 aa19.32■□□□□ 0.68
TRAF4-206ENST00000454852 ABCC8Q09428 1581 aa19.29■□□□□ 0.68
TRAF4-206ENST00000454852 MRC2Q9UBG0 1479 aa19.28■□□□□ 0.68
TRAF4-206ENST00000454852 WRNQ14191 1432 aaPredicted RBP eCLIP19.27■□□□□ 0.68
TRAF4-206ENST00000454852 THOC2Q8NI27 1593 aaKnown RBP19.27■□□□□ 0.67
TRAF4-206ENST00000454852 DNMBPQ6XZF7 1577 aa19.25■□□□□ 0.67
TRAF4-206ENST00000454852 WDR62O43379 1518 aa19.25■□□□□ 0.67
TRAF4-206ENST00000454852 URB2Q14146 1524 aaKnown RBP19.24■□□□□ 0.67
TRAF4-206ENST00000454852 CUX1P39880 1505 aa19.23■□□□□ 0.67
TRAF4-206ENST00000454852 TOP2BQ02880 1626 aa19.22■□□□□ 0.67
TRAF4-206ENST00000454852 BIVM-ERCC5R4GMW8 1640 aa19.22■□□□□ 0.67
TRAF4-206ENST00000454852 TOPBP1Q92547 1522 aa19.21■□□□□ 0.67
TRAF4-206ENST00000454852 SYNJ1O43426 1573 aa19.2■□□□□ 0.66
TRAF4-206ENST00000454852 CHIC1Q5VXU3 224 aa19.15■□□□□ 0.66
TRAF4-206ENST00000454852 POLA1P09884 1462 aaPredicted RBP19.09■□□□□ 0.65
TRAF4-206ENST00000454852 FGD5Q6ZNL6 1462 aa19.09■□□□□ 0.65
TRAF4-206ENST00000454852 CUX2O14529 1486 aa19.06■□□□□ 0.64
TRAF4-206ENST00000454852 TRIM41Q8WV44 630 aa19.06■□□□□ 0.64
TRAF4-206ENST00000454852 IFT140Q96RY7 1462 aa19■□□□□ 0.63
TRAF4-206ENST00000454852 TARBP1Q13395 1621 aaKnown RBP19■□□□□ 0.63
TRAF4-206ENST00000454852 SOGA1O94964 1423 aa18.99■□□□□ 0.63
TRAF4-206ENST00000454852 ABCA10Q8WWZ4 1543 aa18.97■□□□□ 0.63
TRAF4-206ENST00000454852 WDR97A6NE52 1622 aa18.96■□□□□ 0.63
TRAF4-206ENST00000454852 RAD54L2Q9Y4B4 1467 aa18.94■□□□□ 0.62
TRAF4-206ENST00000454852 ABCA5Q8WWZ7 1642 aa18.85■□□□□ 0.61
TRAF4-206ENST00000454852 EEA1Q15075 1411 aa18.83■□□□□ 0.61
TRAF4-206ENST00000454852 KIF27Q86VH2 1401 aa18.83■□□□□ 0.61
TRAF4-206ENST00000454852 ZNF608Q9ULD9 1512 aaPredicted RBP18.82■□□□□ 0.6
TRAF4-206ENST00000454852 EIF4G3O43432 1585 aaKnown RBP18.8■□□□□ 0.6
TRAF4-206ENST00000454852 TDRD9Q8NDG6 1382 aaKnown RBP18.79■□□□□ 0.6
TRAF4-206ENST00000454852 GAPVD1Q14C86 1478 aa18.78■□□□□ 0.6
TRAF4-206ENST00000454852 ERICH3Q5RHP9 1530 aa18.76■□□□□ 0.59
TRAF4-206ENST00000454852 RUSC2Q8N2Y8 1516 aa18.76■□□□□ 0.59
TRAF4-206ENST00000454852 AQRO60306 1485 aaKnown RBP eCLIP18.76■□□□□ 0.591e-10■■■■■ 64.4
TRAF4-206ENST00000454852 GRIN2BQ13224 1484 aa18.73■□□□□ 0.59
TRAF4-206ENST00000454852 PBRM1Q86U86 1689 aa18.72■□□□□ 0.59
TRAF4-206ENST00000454852 IGF1RP08069 1367 aa18.71■□□□□ 0.59
TRAF4-206ENST00000454852 CUL7Q14999 1698 aa18.67■□□□□ 0.58
TRAF4-206ENST00000454852 MAGI1Q96QZ7 1491 aaPredicted RBP18.66■□□□□ 0.58
TRAF4-206ENST00000454852 CSRNP3Q8WYN3 585 aa18.66■□□□□ 0.58
TRAF4-206ENST00000454852 PRXQ9BXM0 1461 aa18.64■□□□□ 0.57
TRAF4-206ENST00000454852 ADAMTS12P58397 1594 aa18.63■□□□□ 0.57
TRAF4-206ENST00000454852 SNAPC4Q5SXM2 1469 aa18.61■□□□□ 0.57
TRAF4-206ENST00000454852 FHAD1B1AJZ9 1412 aa18.6■□□□□ 0.57
TRAF4-206ENST00000454852 KIF21BO75037 1637 aa18.6■□□□□ 0.57
TRAF4-206ENST00000454852 CARMIL1Q5VZK9 1371 aa18.58■□□□□ 0.57
TRAF4-206ENST00000454852 SYNJ2O15056 1496 aa18.57■□□□□ 0.56
TRAF4-206ENST00000454852 FAM9AQ8IZU1 332 aaPredicted RBP18.56■□□□□ 0.56
TRAF4-206ENST00000454852 RAPGEF2Q9Y4G8 1499 aa18.55■□□□□ 0.56
TRAF4-206ENST00000454852 GRIN2AQ12879 1464 aa18.5■□□□□ 0.55
TRAF4-206ENST00000454852 GOLGA3Q08378 1498 aa18.48■□□□□ 0.55
TRAF4-206ENST00000454852 CHD1O14646 1710 aa18.45■□□□□ 0.54
TRAF4-206ENST00000454852 CHMP7Q8WUX9 453 aaPredicted RBP18.44■□□□□ 0.54
TRAF4-206ENST00000454852 NUP160Q12769 1436 aa18.43■□□□□ 0.54
TRAF4-206ENST00000454852 CEP170Q5SW79 1584 aa18.38■□□□□ 0.53
TRAF4-206ENST00000454852 CTTNBP2Q8WZ74 1663 aa18.35■□□□□ 0.53
TRAF4-206ENST00000454852 KIAA0586Q9BVV6 1533 aa18.35■□□□□ 0.53
TRAF4-206ENST00000454852 FBLN2P98095 1184 aa18.35■□□□□ 0.53
TRAF4-206ENST00000454852 TNIKQ9UKE5 1360 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms