RNA–Protein interactions for RNA: ENST00000447873.5

SGCE-207, Transcript of sarcoglycan epsilon, humanhuman

TSL 1 (best) BASIC

Gene SGCE, Length 1,597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-207ENST00000447873 NUP155O75694 1391 aa28.81■■■□□ 2.2
SGCE-207ENST00000447873 BCORL1Q5H9F3 1711 aa28.8■■■□□ 2.2
SGCE-207ENST00000447873 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.8■■■□□ 2.2
SGCE-207ENST00000447873 DEPDC5O75140 1603 aa28.79■■■□□ 2.2
SGCE-207ENST00000447873 KDM5DQ9BY66 1539 aa28.77■■■□□ 2.2
SGCE-207ENST00000447873 RNF17Q9BXT8 1623 aaKnown RBP28.76■■■□□ 2.19
SGCE-207ENST00000447873 MPHOSPH9Q99550 1183 aa28.75■■■□□ 2.19
SGCE-207ENST00000447873 PZPP20742 1482 aa28.74■■■□□ 2.19
SGCE-207ENST00000447873 SLC4A1APQ9BWU0 796 aaKnown RBP28.74■■■□□ 2.19
SGCE-207ENST00000447873 AGLP35573 1532 aa28.74■■■□□ 2.19
SGCE-207ENST00000447873 IQGAP3Q86VI3 1631 aa28.73■■■□□ 2.19
SGCE-207ENST00000447873 KANK1Q14678 1352 aa28.72■■■□□ 2.19
SGCE-207ENST00000447873 PRDM15P57071 1507 aaPredicted RBP28.72■■■□□ 2.19
SGCE-207ENST00000447873 FAM135AQ9P2D6 1515 aa28.72■■■□□ 2.19
SGCE-207ENST00000447873 MROH1Q8NDA8 1641 aa28.72■■■□□ 2.19
SGCE-207ENST00000447873 SIGLEC1Q9BZZ2 1709 aa28.71■■■□□ 2.19
SGCE-207ENST00000447873 GGT6Q6P531 493 aa28.71■■■□□ 2.19
SGCE-207ENST00000447873 VWDEQ8N2E2 1590 aa28.66■■■□□ 2.18
SGCE-207ENST00000447873 ARID4BQ4LE39 1312 aaPredicted RBP28.65■■■□□ 2.18
SGCE-207ENST00000447873 CLSPNQ9HAW4 1339 aa28.63■■■□□ 2.17
SGCE-207ENST00000447873 PKD2Q13563 968 aa28.62■■■□□ 2.17
SGCE-207ENST00000447873 CEP152O94986 1710 aa28.6■■■□□ 2.17
SGCE-207ENST00000447873 WASHC2CQ9Y4E1 1318 aa28.6■■■□□ 2.17
SGCE-207ENST00000447873 FOXD1Q16676 465 aa28.59■■■□□ 2.17
SGCE-207ENST00000447873 TET3O43151 1660 aa28.59■■■□□ 2.17
SGCE-207ENST00000447873 MLECQ14165 292 aa28.58■■■□□ 2.17
SGCE-207ENST00000447873 LMTK2Q8IWU2 1503 aa28.57■■■□□ 2.16
SGCE-207ENST00000447873 ZC3H13Q5T200 1668 aaKnown RBP28.57■■■□□ 2.16
SGCE-207ENST00000447873 ABCC3O15438 1527 aa28.56■■■□□ 2.16
SGCE-207ENST00000447873 PPP6R1Q9UPN7 881 aa28.56■■■□□ 2.16
SGCE-207ENST00000447873 E9PCH4 1651 aa28.53■■■□□ 2.16
SGCE-207ENST00000447873 EFCAB6Q5THR3 1501 aa28.51■■■□□ 2.16
SGCE-207ENST00000447873 CAMSAP1Q5T5Y3 1602 aa28.5■■■□□ 2.15
SGCE-207ENST00000447873 ANKRD30BQ9BXX2 1392 aa28.49■■■□□ 2.15
SGCE-207ENST00000447873 ESF1Q9H501 851 aaKnown RBP28.49■■■□□ 2.15
SGCE-207ENST00000447873 CLTCQ00610 1675 aaKnown RBP28.47■■■□□ 2.15
SGCE-207ENST00000447873 SIN3AQ96ST3 1273 aa28.44■■■□□ 2.14
SGCE-207ENST00000447873 RPRD2Q5VT52 1461 aaKnown RBP28.43■■■□□ 2.14
SGCE-207ENST00000447873 NEUROD1Q13562 356 aa28.42■■■□□ 2.14
SGCE-207ENST00000447873 NPATQ14207 1427 aa28.41■■■□□ 2.14
SGCE-207ENST00000447873 ARHGAP31Q2M1Z3 1444 aa28.41■■■□□ 2.14
SGCE-207ENST00000447873 CFAP65Q6ZU64 1925 aaKnown RBP28.41■■■□□ 2.14
SGCE-207ENST00000447873 ZEB1P37275 1124 aaPredicted RBP28.41■■■□□ 2.14
SGCE-207ENST00000447873 SPHKAPQ2M3C7 1700 aa28.4■■■□□ 2.14
SGCE-207ENST00000447873 CNTLNQ9NXG0 1405 aa28.39■■■□□ 2.13
SGCE-207ENST00000447873 FER1L4A9Z1Z3 1794 aa28.38■■■□□ 2.13
SGCE-207ENST00000447873 PLA2R1Q13018 1463 aa28.37■■■□□ 2.13
SGCE-207ENST00000447873 PTPRTO14522 1441 aa28.36■■■□□ 2.13
SGCE-207ENST00000447873 MROH2AA6NES4 1674 aa28.34■■■□□ 2.13
SGCE-207ENST00000447873 TRPM2O94759 1503 aa28.34■■■□□ 2.13
SGCE-207ENST00000447873 CCDC144AA2RUR9 1427 aa28.34■■■□□ 2.13
SGCE-207ENST00000447873 ZMYM3Q14202 1370 aa28.33■■■□□ 2.13
SGCE-207ENST00000447873 PREX1Q8TCU6 1659 aa28.3■■■□□ 2.12
SGCE-207ENST00000447873 MADDQ8WXG6 1647 aa28.29■■■□□ 2.12
SGCE-207ENST00000447873 ADAMTSL3P82987 1691 aa28.29■■■□□ 2.12
SGCE-207ENST00000447873 NOS1P29475 1434 aa28.28■■■□□ 2.12
SGCE-207ENST00000447873 FBXO31Q5XUX0 539 aaPredicted RBP28.26■■■□□ 2.11
SGCE-207ENST00000447873 TONSLQ96HA7 1378 aa28.25■■■□□ 2.11
SGCE-207ENST00000447873 CLTCL1P53675 1640 aa28.25■■■□□ 2.11
SGCE-207ENST00000447873 ERVK-7P63135 1459 aa28.25■■■□□ 2.11
SGCE-207ENST00000447873 RIMS1Q86UR5 1692 aaKnown RBP28.25■■■□□ 2.11
SGCE-207ENST00000447873 TIMELESSQ9UNS1 1208 aa28.24■■■□□ 2.11
SGCE-207ENST00000447873 SYNMO15061 1565 aa28.23■■■□□ 2.11
SGCE-207ENST00000447873 C3P01024 1663 aa28.23■■■□□ 2.11
SGCE-207ENST00000447873 UGGT1Q9NYU2 1555 aa28.23■■■□□ 2.11
SGCE-207ENST00000447873 SPATA31D1Q6ZQQ2 1576 aa28.21■■■□□ 2.11
SGCE-207ENST00000447873 KIF1BO60333 1816 aa28.18■■■□□ 2.1
SGCE-207ENST00000447873 CEBPAP49715 358 aaPredicted RBP28.18■■■□□ 2.1
SGCE-207ENST00000447873 PIK3C2BO00750 1634 aa28.18■■■□□ 2.1
SGCE-207ENST00000447873 SLC52A1Q9NWF4 448 aa28.17■■■□□ 2.1
SGCE-207ENST00000447873 PLPPR3Q6T4P5 718 aa28.16■■■□□ 2.1
SGCE-207ENST00000447873 L3MBTL2Q969R5 705 aa28.14■■■□□ 2.1
SGCE-207ENST00000447873 IDI1Q13907 227 aa28.12■■■□□ 2.09
SGCE-207ENST00000447873 SPATA31E1Q6ZUB1 1445 aa28.12■■■□□ 2.09
SGCE-207ENST00000447873 RGL3Q3MIN7 710 aa28.11■■■□□ 2.09
SGCE-207ENST00000447873 TNRQ92752 1358 aa28.11■■■□□ 2.09
SGCE-207ENST00000447873 CHGAP10645 457 aaKnown RBP28.1■■■□□ 2.09
SGCE-207ENST00000447873 NEURL4Q96JN8 1562 aa28.09■■■□□ 2.09
SGCE-207ENST00000447873 ADGRB3O60242 1522 aa28.07■■■□□ 2.08
SGCE-207ENST00000447873 PTPRMP28827 1452 aa28.05■■■□□ 2.08
SGCE-207ENST00000447873 PPP1R15AO75807 674 aaPredicted RBP28.05■■■□□ 2.08
SGCE-207ENST00000447873 DCAF11Q8TEB1 546 aa28.03■■■□□ 2.08
SGCE-207ENST00000447873 ZNF326Q5BKZ1 582 aaKnown RBP28.03■■■□□ 2.08
SGCE-207ENST00000447873 STAG3Q9UJ98 1225 aa28.03■■■□□ 2.08
SGCE-207ENST00000447873 TMEM131LA2VDJ0 1609 aa28.02■■■□□ 2.08
SGCE-207ENST00000447873 MYO5BQ9ULV0 1848 aa28.01■■■□□ 2.07
SGCE-207ENST00000447873 NLRP1Q9C000 1473 aa28■■■□□ 2.07
SGCE-207ENST00000447873 KDM2AQ9Y2K7 1162 aa27.99■■■□□ 2.07
SGCE-207ENST00000447873 KDM4FA0A1W2PPD8 638 aa27.97■■■□□ 2.07
SGCE-207ENST00000447873 SETD1BQ9UPS6 1966 aaKnown RBP27.96■■■□□ 2.07
SGCE-207ENST00000447873 MYO3AQ8NEV4 1616 aa27.96■■■□□ 2.07
SGCE-207ENST00000447873 KDM5AP29375 1690 aaKnown RBP27.95■■■□□ 2.07
SGCE-207ENST00000447873 RPGRIP1LQ68CZ1 1315 aa27.95■■■□□ 2.06
SGCE-207ENST00000447873 IFT172Q9UG01 1749 aa27.94■■■□□ 2.06
SGCE-207ENST00000447873 STAC3Q96MF2 364 aa27.94■■■□□ 2.06
SGCE-207ENST00000447873 A2ML1A8K2U0 1454 aa27.93■■■□□ 2.06
SGCE-207ENST00000447873 UBR1Q8IWV7 1749 aa27.93■■■□□ 2.06
SGCE-207ENST00000447873 PPLO60437 1756 aa27.93■■■□□ 2.06
SGCE-207ENST00000447873 UHRF1BP1Q6BDS2 1440 aa27.89■■■□□ 2.06
SGCE-207ENST00000447873 NBPF8Q3BBV2 869 aa27.89■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms