RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 DEPDC5O75140 1603 aa18.88■□□□□ 0.61
SCLT1-202ENST00000439369 PRDM15P57071 1507 aaPredicted RBP18.85■□□□□ 0.61
SCLT1-202ENST00000439369 KDM5DQ9BY66 1539 aa18.85■□□□□ 0.61
SCLT1-202ENST00000439369 FAM135AQ9P2D6 1515 aa18.85■□□□□ 0.61
SCLT1-202ENST00000439369 KIF3BO15066 747 aa18.84■□□□□ 0.61
SCLT1-202ENST00000439369 PPP6R1Q9UPN7 881 aa18.83■□□□□ 0.6
SCLT1-202ENST00000439369 MROH1Q8NDA8 1641 aa18.82■□□□□ 0.6
SCLT1-202ENST00000439369 KANK1Q14678 1352 aa18.81■□□□□ 0.6
SCLT1-202ENST00000439369 VWDEQ8N2E2 1590 aa18.81■□□□□ 0.6
SCLT1-202ENST00000439369 IQGAP3Q86VI3 1631 aa18.8■□□□□ 0.6
SCLT1-202ENST00000439369 SIGLEC1Q9BZZ2 1709 aa18.8■□□□□ 0.6
SCLT1-202ENST00000439369 NUP155O75694 1391 aa18.79■□□□□ 0.6
SCLT1-202ENST00000439369 LMTK2Q8IWU2 1503 aa18.78■□□□□ 0.6
SCLT1-202ENST00000439369 ZC3H13Q5T200 1668 aaKnown RBP18.77■□□□□ 0.6
SCLT1-202ENST00000439369 TRIM52Q96A61 297 aa18.77■□□□□ 0.6
SCLT1-202ENST00000439369 PZPP20742 1482 aa18.76■□□□□ 0.59
SCLT1-202ENST00000439369 ARID4BQ4LE39 1312 aaPredicted RBP18.74■□□□□ 0.59
SCLT1-202ENST00000439369 GGT6Q6P531 493 aa18.74■□□□□ 0.59
SCLT1-202ENST00000439369 ABCC3O15438 1527 aa18.73■□□□□ 0.59
SCLT1-202ENST00000439369 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.72■□□□□ 0.59
SCLT1-202ENST00000439369 CNTLNQ9NXG0 1405 aa18.72■□□□□ 0.59
SCLT1-202ENST00000439369 TET3O43151 1660 aa18.72■□□□□ 0.59
SCLT1-202ENST00000439369 MPHOSPH9Q99550 1183 aa18.71■□□□□ 0.59
SCLT1-202ENST00000439369 DHX57Q6P158 1386 aaKnown RBP18.7■□□□□ 0.58
SCLT1-202ENST00000439369 SLC4A1APQ9BWU0 796 aaKnown RBP18.7■□□□□ 0.58
SCLT1-202ENST00000439369 WASHC2CQ9Y4E1 1318 aa18.7■□□□□ 0.58
SCLT1-202ENST00000439369 EFCAB6Q5THR3 1501 aa18.69■□□□□ 0.58
SCLT1-202ENST00000439369 ARHGAP31Q2M1Z3 1444 aa18.68■□□□□ 0.58
SCLT1-202ENST00000439369 RPRD2Q5VT52 1461 aaKnown RBP18.68■□□□□ 0.58
SCLT1-202ENST00000439369 CLSPNQ9HAW4 1339 aa18.67■□□□□ 0.58
SCLT1-202ENST00000439369 CAMSAP1Q5T5Y3 1602 aa18.67■□□□□ 0.58
SCLT1-202ENST00000439369 MROH2AA6NES4 1674 aa18.66■□□□□ 0.58
SCLT1-202ENST00000439369 CEP152O94986 1710 aa18.66■□□□□ 0.58
SCLT1-202ENST00000439369 ESF1Q9H501 851 aaKnown RBP18.65■□□□□ 0.58
SCLT1-202ENST00000439369 ADAMTSL3P82987 1691 aa18.64■□□□□ 0.57
SCLT1-202ENST00000439369 PKD2Q13563 968 aa18.64■□□□□ 0.57
SCLT1-202ENST00000439369 MLECQ14165 292 aa18.64■□□□□ 0.57
SCLT1-202ENST00000439369 CLTCQ00610 1675 aaKnown RBP18.63■□□□□ 0.57
SCLT1-202ENST00000439369 E9PCH4 1651 aa18.62■□□□□ 0.57
SCLT1-202ENST00000439369 FER1L4A9Z1Z3 1794 aa18.62■□□□□ 0.57
SCLT1-202ENST00000439369 NPATQ14207 1427 aa18.61■□□□□ 0.57
SCLT1-202ENST00000439369 CCER1Q8TC90 406 aaPredicted RBP18.59■□□□□ 0.57
SCLT1-202ENST00000439369 PTPRTO14522 1441 aa18.58■□□□□ 0.57
SCLT1-202ENST00000439369 ZMYM3Q14202 1370 aa18.58■□□□□ 0.57
SCLT1-202ENST00000439369 MADDQ8WXG6 1647 aa18.58■□□□□ 0.56
SCLT1-202ENST00000439369 ANKRD30BQ9BXX2 1392 aa18.57■□□□□ 0.56
SCLT1-202ENST00000439369 NOS1P29475 1434 aa18.56■□□□□ 0.56
SCLT1-202ENST00000439369 TRPM2O94759 1503 aa18.55■□□□□ 0.56
SCLT1-202ENST00000439369 SPHKAPQ2M3C7 1700 aa18.54■□□□□ 0.56
SCLT1-202ENST00000439369 SPATA31D1Q6ZQQ2 1576 aa18.54■□□□□ 0.56
SCLT1-202ENST00000439369 PREX1Q8TCU6 1659 aa18.54■□□□□ 0.56
SCLT1-202ENST00000439369 ERVK-7P63135 1459 aa18.53■□□□□ 0.56
SCLT1-202ENST00000439369 PLA2R1Q13018 1463 aa18.53■□□□□ 0.56
SCLT1-202ENST00000439369 RIMS1Q86UR5 1692 aaKnown RBP18.53■□□□□ 0.56
SCLT1-202ENST00000439369 C3P01024 1663 aa18.51■□□□□ 0.55
SCLT1-202ENST00000439369 FOXD1Q16676 465 aa18.51■□□□□ 0.55
SCLT1-202ENST00000439369 CCDC144AA2RUR9 1427 aa18.49■□□□□ 0.55
SCLT1-202ENST00000439369 SYNMO15061 1565 aa18.48■□□□□ 0.55
SCLT1-202ENST00000439369 SLC52A1Q9NWF4 448 aa18.48■□□□□ 0.55
SCLT1-202ENST00000439369 PTPRMP28827 1452 aa18.47■□□□□ 0.55
SCLT1-202ENST00000439369 PIK3C2BO00750 1634 aa18.47■□□□□ 0.55
SCLT1-202ENST00000439369 NEURL4Q96JN8 1562 aa18.47■□□□□ 0.55
SCLT1-202ENST00000439369 TNRQ92752 1358 aa18.45■□□□□ 0.54
SCLT1-202ENST00000439369 FBXO31Q5XUX0 539 aaPredicted RBP18.45■□□□□ 0.54
SCLT1-202ENST00000439369 CLTCL1P53675 1640 aa18.45■□□□□ 0.54
SCLT1-202ENST00000439369 NLRP1Q9C000 1473 aa18.44■□□□□ 0.54
SCLT1-202ENST00000439369 TIMELESSQ9UNS1 1208 aa18.43■□□□□ 0.54
SCLT1-202ENST00000439369 KDM4FA0A1W2PPD8 638 aa18.42■□□□□ 0.54
SCLT1-202ENST00000439369 KDM5AP29375 1690 aaKnown RBP18.41■□□□□ 0.54
SCLT1-202ENST00000439369 CEBPAP49715 358 aaPredicted RBP18.4■□□□□ 0.54
SCLT1-202ENST00000439369 CFAP65Q6ZU64 1925 aaKnown RBP18.39■□□□□ 0.53
SCLT1-202ENST00000439369 UGGT1Q9NYU2 1555 aa18.39■□□□□ 0.53
SCLT1-202ENST00000439369 SIN3AQ96ST3 1273 aa18.39■□□□□ 0.53
SCLT1-202ENST00000439369 SPATA31E1Q6ZUB1 1445 aa18.39■□□□□ 0.53
SCLT1-202ENST00000439369 ADGRB3O60242 1522 aa18.39■□□□□ 0.53
SCLT1-202ENST00000439369 KIF1BO60333 1816 aa18.38■□□□□ 0.53
SCLT1-202ENST00000439369 IDI1Q13907 227 aa18.37■□□□□ 0.53
SCLT1-202ENST00000439369 ZEB1P37275 1124 aaPredicted RBP18.36■□□□□ 0.53
SCLT1-202ENST00000439369 MYO3AQ8NEV4 1616 aa18.36■□□□□ 0.53
SCLT1-202ENST00000439369 SETD1BQ9UPS6 1966 aaKnown RBP18.36■□□□□ 0.53
SCLT1-202ENST00000439369 TMEM131LA2VDJ0 1609 aa18.35■□□□□ 0.53
SCLT1-202ENST00000439369 A2ML1A8K2U0 1454 aa18.35■□□□□ 0.53
SCLT1-202ENST00000439369 TONSLQ96HA7 1378 aa18.35■□□□□ 0.53
SCLT1-202ENST00000439369 NEUROD1Q13562 356 aa18.35■□□□□ 0.53
SCLT1-202ENST00000439369 STAC3Q96MF2 364 aa18.34■□□□□ 0.53
SCLT1-202ENST00000439369 ZNF142P52746 1687 aaPredicted RBP18.34■□□□□ 0.53
SCLT1-202ENST00000439369 RPGRIP1LQ68CZ1 1315 aa18.32■□□□□ 0.52
SCLT1-202ENST00000439369 CEP170BQ9Y4F5 1589 aaPredicted RBP18.31■□□□□ 0.52
SCLT1-202ENST00000439369 UHRF1BP1Q6BDS2 1440 aa18.31■□□□□ 0.52
SCLT1-202ENST00000439369 UBR1Q8IWV7 1749 aa18.3■□□□□ 0.52
SCLT1-202ENST00000439369 STAG3Q9UJ98 1225 aa18.29■□□□□ 0.52
SCLT1-202ENST00000439369 PLPPR3Q6T4P5 718 aa18.28■□□□□ 0.52
SCLT1-202ENST00000439369 CHGAP10645 457 aaKnown RBP18.27■□□□□ 0.52
SCLT1-202ENST00000439369 THEMISQ8N1K5 641 aaPredicted RBP18.27■□□□□ 0.52
SCLT1-202ENST00000439369 L3MBTL2Q969R5 705 aa18.27■□□□□ 0.52
SCLT1-202ENST00000439369 MYOM2P54296 1465 aa18.26■□□□□ 0.51
SCLT1-202ENST00000439369 ZFYVE9O95405 1425 aa18.26■□□□□ 0.51
SCLT1-202ENST00000439369 IFT172Q9UG01 1749 aa18.26■□□□□ 0.51
SCLT1-202ENST00000439369 SLIT1O75093 1534 aa18.25■□□□□ 0.51
SCLT1-202ENST00000439369 NEXMIFQ5QGS0 1516 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms