RNA–Protein interactions for RNA: ENST00000435747.2

CPNE1-214, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-214ENST00000435747 DEPDC5O75140 1603 aa17.32■□□□□ 0.36
CPNE1-214ENST00000435747 ZNF777Q9ULD5 760 aaPredicted RBP17.31■□□□□ 0.36
CPNE1-214ENST00000435747 SYCP2Q9BX26 1530 aa17.31■□□□□ 0.36
CPNE1-214ENST00000435747 THEMISQ8N1K5 641 aaPredicted RBP17.3■□□□□ 0.36
CPNE1-214ENST00000435747 LRRIQ1Q96JM4 1722 aa17.3■□□□□ 0.36
CPNE1-214ENST00000435747 INO80Q9ULG1 1556 aaPredicted RBP17.28■□□□□ 0.36
CPNE1-214ENST00000435747 FBXO31Q5XUX0 539 aaPredicted RBP17.27■□□□□ 0.36
CPNE1-214ENST00000435747 UPF1Q92900 1129 aaKnown RBP eCLIP17.27■□□□□ 0.36
CPNE1-214ENST00000435747 FAM135AQ9P2D6 1515 aa17.26■□□□□ 0.35
CPNE1-214ENST00000435747 HNRNPMP52272 730 aaKnown RBP eCLIP17.26■□□□□ 0.351e-7■■■■□ 25.4
CPNE1-214ENST00000435747 UGGT1Q9NYU2 1555 aa17.26■□□□□ 0.35
CPNE1-214ENST00000435747 CHIC1Q5VXU3 224 aa17.25■□□□□ 0.35
CPNE1-214ENST00000435747 ADGBQ8N7X0 1667 aa17.25■□□□□ 0.35
CPNE1-214ENST00000435747 PZPP20742 1482 aa17.24■□□□□ 0.35
CPNE1-214ENST00000435747 NLRP1Q9C000 1473 aa17.23■□□□□ 0.35
CPNE1-214ENST00000435747 FAM135BQ49AJ0 1406 aa17.22■□□□□ 0.35
CPNE1-214ENST00000435747 ARHGAP35Q9NRY4 1499 aa17.2■□□□□ 0.34
CPNE1-214ENST00000435747 XIRP1Q702N8 1843 aaKnown RBP17.2■□□□□ 0.34
CPNE1-214ENST00000435747 MIA2Q96PC5 1412 aa17.2■□□□□ 0.34
CPNE1-214ENST00000435747 KIAA1107Q9UPP5 1409 aa17.19■□□□□ 0.34
CPNE1-214ENST00000435747 PLEKHH2Q8IVE3 1493 aa17.18■□□□□ 0.34
CPNE1-214ENST00000435747 KDM5DQ9BY66 1539 aa17.17■□□□□ 0.34
CPNE1-214ENST00000435747 CCDC18Q5T9S5 1454 aa17.17■□□□□ 0.34
CPNE1-214ENST00000435747 ZC3H13Q5T200 1668 aaKnown RBP17.16■□□□□ 0.34
CPNE1-214ENST00000435747 ROBO1Q9Y6N7 1651 aa17.16■□□□□ 0.34
CPNE1-214ENST00000435747 TRIM52Q96A61 297 aa17.15■□□□□ 0.34
CPNE1-214ENST00000435747 GPATCH8Q9UKJ3 1502 aaKnown RBP17.15■□□□□ 0.34
CPNE1-214ENST00000435747 WASHC2CQ9Y4E1 1318 aa17.14■□□□□ 0.33
CPNE1-214ENST00000435747 KIF3BO15066 747 aa17.12■□□□□ 0.33
CPNE1-214ENST00000435747 UBTFP17480 764 aaKnown RBP17.12■□□□□ 0.33
CPNE1-214ENST00000435747 DHX29Q7Z478 1369 aaKnown RBP17.12■□□□□ 0.33
CPNE1-214ENST00000435747 CFDP1Q9UEE9 299 aaPredicted RBP17.11■□□□□ 0.33
CPNE1-214ENST00000435747 ZNF772Q68DY9 489 aaPredicted RBP17.09■□□□□ 0.33
CPNE1-214ENST00000435747 JCADQ9P266 1359 aa17.09■□□□□ 0.33
CPNE1-214ENST00000435747 PHLPP1O60346 1717 aa17.08■□□□□ 0.32
CPNE1-214ENST00000435747 SCAF11Q99590 1463 aaKnown RBP17.08■□□□□ 0.32
CPNE1-214ENST00000435747 EHMT2Q96KQ7 1210 aa17.08■□□□□ 0.32
CPNE1-214ENST00000435747 LRRC9Q6ZRR7 1453 aa17.07■□□□□ 0.32
CPNE1-214ENST00000435747 CASKIN1Q8WXD9 1431 aa17.07■□□□□ 0.32
CPNE1-214ENST00000435747 MEX3CQ5U5Q3 659 aaKnown RBP17.06■□□□□ 0.32
CPNE1-214ENST00000435747 RTEL1-TNFRSF6BF6WH68 1400 aa17.05■□□□□ 0.32
CPNE1-214ENST00000435747 TMEM94Q12767 1356 aa17.05■□□□□ 0.32
CPNE1-214ENST00000435747 CCNB3Q8WWL7 1395 aa17.04■□□□□ 0.32
CPNE1-214ENST00000435747 UBR1Q8IWV7 1749 aa17.04■□□□□ 0.32
CPNE1-214ENST00000435747 RXRBP28702 533 aa17.03■□□□□ 0.32
CPNE1-214ENST00000435747 TXNDC2Q86VQ3 553 aa17.02■□□□□ 0.32
CPNE1-214ENST00000435747 CFAP65Q6ZU64 1925 aaKnown RBP17.02■□□□□ 0.31
CPNE1-214ENST00000435747 LRP6O75581 1613 aa17■□□□□ 0.31
CPNE1-214ENST00000435747 LTKP29376 864 aa17■□□□□ 0.31
CPNE1-214ENST00000435747 MAP3K1Q13233 1512 aa17■□□□□ 0.31
CPNE1-214ENST00000435747 CDK12Q9NYV4 1490 aaPredicted RBP16.99■□□□□ 0.31
CPNE1-214ENST00000435747 MBD5Q9P267 1494 aa16.99■□□□□ 0.31
CPNE1-214ENST00000435747 SPATA31A6Q5VVP1 1343 aa16.99■□□□□ 0.31
CPNE1-214ENST00000435747 ERVK-7P63135 1459 aa16.99■□□□□ 0.31
CPNE1-214ENST00000435747 ZNF644Q9H582 1327 aaPredicted RBP16.98■□□□□ 0.31
CPNE1-214ENST00000435747 EID1Q9Y6B2 187 aa16.98■□□□□ 0.31
CPNE1-214ENST00000435747 ARHGAP23Q9P227 1491 aa16.98■□□□□ 0.31
CPNE1-214ENST00000435747 SLIT1O75093 1534 aa16.97■□□□□ 0.31
CPNE1-214ENST00000435747 PROSER2Q86WR7 435 aaPredicted RBP16.97■□□□□ 0.31
CPNE1-214ENST00000435747 COL16A1Q07092 1604 aaPredicted RBP16.96■□□□□ 0.31
CPNE1-214ENST00000435747 KCNA6P17658 529 aa16.96■□□□□ 0.31
CPNE1-214ENST00000435747 RBM33Q96EV2 1170 aaKnown RBP16.96■□□□□ 0.31
CPNE1-214ENST00000435747 NCOA2Q15596 1464 aa16.96■□□□□ 0.31
CPNE1-214ENST00000435747 FYCO1Q9BQS8 1478 aa16.96■□□□□ 0.31
CPNE1-214ENST00000435747 MSH6P52701 1360 aa16.95■□□□□ 0.3
CPNE1-214ENST00000435747 SLAIN2Q9P270 581 aa16.95■□□□□ 0.3
CPNE1-214ENST00000435747 FGD6Q6ZV73 1430 aa16.95■□□□□ 0.3
CPNE1-214ENST00000435747 ABCC3O15438 1527 aa16.94■□□□□ 0.3
CPNE1-214ENST00000435747 PRDM15P57071 1507 aaPredicted RBP16.93■□□□□ 0.3
CPNE1-214ENST00000435747 FOXD1Q16676 465 aa16.93■□□□□ 0.3
CPNE1-214ENST00000435747 TIAM1Q13009 1591 aa16.93■□□□□ 0.3
CPNE1-214ENST00000435747 ZRANB1Q9UGI0 708 aa16.91■□□□□ 0.3
CPNE1-214ENST00000435747 CCDC141Q6ZP82 1450 aa16.91■□□□□ 0.3
CPNE1-214ENST00000435747 SHPRHQ149N8 1683 aa16.91■□□□□ 0.3
CPNE1-214ENST00000435747 NKTRP30414 1462 aaKnown RBP16.89■□□□□ 0.29
CPNE1-214ENST00000435747 MTUS2Q5JR59 1369 aa16.89■□□□□ 0.29
CPNE1-214ENST00000435747 RGS12O14924 1447 aa16.87■□□□□ 0.29
CPNE1-214ENST00000435747 NUTM2BA6NNL0 878 aaPredicted RBP16.87■□□□□ 0.29
CPNE1-214ENST00000435747 NUTM2EB1AL46 878 aaPredicted RBP16.87■□□□□ 0.29
CPNE1-214ENST00000435747 NUTM2DQ5VT03 806 aaPredicted RBP16.87■□□□□ 0.29
CPNE1-214ENST00000435747 NUTM2AQ8IVF1 878 aaPredicted RBP16.87■□□□□ 0.29
CPNE1-214ENST00000435747 CEP152O94986 1710 aa16.87■□□□□ 0.29
CPNE1-214ENST00000435747 SLC26A8Q96RN1 970 aa16.86■□□□□ 0.29
CPNE1-214ENST00000435747 AFF2P51816 1311 aa16.86■□□□□ 0.29
CPNE1-214ENST00000435747 TMEM2Q9UHN6 1383 aa16.86■□□□□ 0.29
CPNE1-214ENST00000435747 NWD1Q149M9 1564 aa16.85■□□□□ 0.29
CPNE1-214ENST00000435747 SETBP1Q9Y6X0 1596 aa16.85■□□□□ 0.29
CPNE1-214ENST00000435747 RSPH4AQ5TD94 716 aa16.84■□□□□ 0.29
CPNE1-214ENST00000435747 STAG3Q9UJ98 1225 aa16.84■□□□□ 0.29
CPNE1-214ENST00000435747 KDM5AP29375 1690 aaKnown RBP16.84■□□□□ 0.29
CPNE1-214ENST00000435747 PIK3C2BO00750 1634 aa16.83■□□□□ 0.28
CPNE1-214ENST00000435747 AHDC1Q5TGY3 1603 aaPredicted RBP16.83■□□□□ 0.28
CPNE1-214ENST00000435747 CAMSAP2Q08AD1 1489 aa16.82■□□□□ 0.28
CPNE1-214ENST00000435747 RBM6P78332 1123 aaKnown RBP16.82■□□□□ 0.28
CPNE1-214ENST00000435747 TET3O43151 1660 aa16.81■□□□□ 0.28
CPNE1-214ENST00000435747 ATAD2Q6PL18 1390 aa16.81■□□□□ 0.28
CPNE1-214ENST00000435747 TSPY4P0CV99 314 aa16.8■□□□□ 0.28
CPNE1-214ENST00000435747 TSPY10P0CW01 314 aa16.8■□□□□ 0.28
CPNE1-214ENST00000435747 EIF2AK4Q9P2K8 1649 aaKnown RBP16.8■□□□□ 0.28
CPNE1-214ENST00000435747 MROH1Q8NDA8 1641 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms