RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 RSPH4AQ5TD94 716 aa16.02■□□□□ 0.15
CD44-209ENST00000433892 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.01■□□□□ 0.15
CD44-209ENST00000433892 RGL3Q3MIN7 710 aa16.01■□□□□ 0.15
CD44-209ENST00000433892 NUDCQ9Y266 331 aa16■□□□□ 0.15
CD44-209ENST00000433892 SYCP2Q9BX26 1530 aa16■□□□□ 0.15
CD44-209ENST00000433892 CCDC144AA2RUR9 1427 aa16■□□□□ 0.15
CD44-209ENST00000433892 MSH5O43196 834 aa15.99■□□□□ 0.15
CD44-209ENST00000433892 ARHGAP5Q13017 1502 aa15.98■□□□□ 0.15
CD44-209ENST00000433892 TTC37Q6PGP7 1564 aa15.97■□□□□ 0.15
CD44-209ENST00000433892 NBPF1Q3BBV0 1214 aa15.97■□□□□ 0.15
CD44-209ENST00000433892 FANCIQ9NVI1 1328 aa15.96■□□□□ 0.15
CD44-209ENST00000433892 PRAG1Q86YV5 1406 aa15.96■□□□□ 0.15
CD44-209ENST00000433892 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.95■□□□□ 0.14
CD44-209ENST00000433892 PLA2R1Q13018 1463 aa15.95■□□□□ 0.14
CD44-209ENST00000433892 MYBBP1AQ9BQG0 1328 aaKnown RBP15.95■□□□□ 0.14
CD44-209ENST00000433892 RALBP1Q15311 655 aa15.94■□□□□ 0.14
CD44-209ENST00000433892 CHD1O14646 1710 aa15.94■□□□□ 0.14
CD44-209ENST00000433892 BRD4O60885 1362 aaPredicted RBP15.93■□□□□ 0.14
CD44-209ENST00000433892 PLEKHH2Q8IVE3 1493 aa15.93■□□□□ 0.14
CD44-209ENST00000433892 TRPM1Q7Z4N2 1603 aa15.93■□□□□ 0.14
CD44-209ENST00000433892 RNF123Q5XPI4 1314 aa15.93■□□□□ 0.14
CD44-209ENST00000433892 LRPPRCP42704 1394 aaKnown RBP15.92■□□□□ 0.14
CD44-209ENST00000433892 KTN1Q86UP2 1357 aaKnown RBP15.92■□□□□ 0.14
CD44-209ENST00000433892 UNC13BO14795 1591 aa15.92■□□□□ 0.14
CD44-209ENST00000433892 MAST1Q9Y2H9 1570 aa15.92■□□□□ 0.14
CD44-209ENST00000433892 A2MP01023 1474 aa15.91■□□□□ 0.14
CD44-209ENST00000433892 ERCC6L2Q5T890 1561 aa15.91■□□□□ 0.14
CD44-209ENST00000433892 E9PCH4 1651 aa15.91■□□□□ 0.14
CD44-209ENST00000433892 SHROOM2Q13796 1616 aa15.89■□□□□ 0.13
CD44-209ENST00000433892 ABCC2Q92887 1545 aa15.88■□□□□ 0.13
CD44-209ENST00000433892 GPRASP1Q5JY77 1395 aa15.88■□□□□ 0.13
CD44-209ENST00000433892 MYO5CQ9NQX4 1742 aa15.87■□□□□ 0.13
CD44-209ENST00000433892 PER1O15534 1290 aaPredicted RBP15.87■□□□□ 0.13
CD44-209ENST00000433892 NLRP13Q86W25 1043 aa15.87■□□□□ 0.13
CD44-209ENST00000433892 CCDC136Q96JN2 1154 aa15.87■□□□□ 0.13
CD44-209ENST00000433892 SALL2Q9Y467 1007 aaPredicted RBP15.87■□□□□ 0.13
CD44-209ENST00000433892 PLXNC1O60486 1568 aa15.87■□□□□ 0.13
CD44-209ENST00000433892 PARD3Q8TEW0 1356 aa15.87■□□□□ 0.13
CD44-209ENST00000433892 IQGAP3Q86VI3 1631 aa15.87■□□□□ 0.13
CD44-209ENST00000433892 DISP3Q9P2K9 1392 aa15.86■□□□□ 0.13
CD44-209ENST00000433892 TESK2Q96S53 571 aa15.86■□□□□ 0.13
CD44-209ENST00000433892 DUOX2Q9NRD8 1548 aa15.86■□□□□ 0.13
CD44-209ENST00000433892 CC2D1BQ5T0F9 858 aaKnown RBP15.84■□□□□ 0.13
CD44-209ENST00000433892 COL17A1Q9UMD9 1497 aaPredicted RBP15.84■□□□□ 0.13
CD44-209ENST00000433892 PRDM15P57071 1507 aaPredicted RBP15.83■□□□□ 0.13
CD44-209ENST00000433892 EFCAB2Q5VUJ9 269 aa15.83■□□□□ 0.13
CD44-209ENST00000433892 PLCH2O75038 1416 aa15.83■□□□□ 0.12
CD44-209ENST00000433892 ERICH6Q7L0X2 663 aa15.83■□□□□ 0.12
CD44-209ENST00000433892 ERBINQ96RT1 1412 aa15.83■□□□□ 0.12
CD44-209ENST00000433892 PANK3Q9H999 370 aa15.82■□□□□ 0.12
CD44-209ENST00000433892 ATP10AO60312 1499 aa15.81■□□□□ 0.12
CD44-209ENST00000433892 MAGI2Q86UL8 1455 aa15.81■□□□□ 0.12
CD44-209ENST00000433892 LAMC1P11047 1609 aa15.8■□□□□ 0.12
CD44-209ENST00000433892 TRAPPC8Q9Y2L5 1435 aa15.8■□□□□ 0.12
CD44-209ENST00000433892 TMF1P82094 1093 aa15.8■□□□□ 0.12
CD44-209ENST00000433892 EIF2AK4Q9P2K8 1649 aaKnown RBP15.79■□□□□ 0.12
CD44-209ENST00000433892 WASHC2CQ9Y4E1 1318 aa15.79■□□□□ 0.12
CD44-209ENST00000433892 RRP1P56182 461 aaKnown RBP15.78■□□□□ 0.12
CD44-209ENST00000433892 RCAN3Q9UKA8 241 aa15.78■□□□□ 0.12
CD44-209ENST00000433892 ZCCHC11Q5TAX3 1644 aaKnown RBP15.78■□□□□ 0.12
CD44-209ENST00000433892 ABCC1P33527 1531 aa15.77■□□□□ 0.11
CD44-209ENST00000433892 AFAP1Q8N556 730 aa15.77■□□□□ 0.11
CD44-209ENST00000433892 CDCA7LQ96GN5 454 aa15.76■□□□□ 0.11
CD44-209ENST00000433892 SPAG9O60271 1321 aaKnown RBP15.76■□□□□ 0.11
CD44-209ENST00000433892 PDE3BQ13370 1112 aa15.75■□□□□ 0.11
CD44-209ENST00000433892 EXOC6Q8TAG9 804 aa15.75■□□□□ 0.11
CD44-209ENST00000433892 UHRF1BP1LA0JNW5 1464 aa15.72■□□□□ 0.11
CD44-209ENST00000433892 RNF17Q9BXT8 1623 aaKnown RBP15.72■□□□□ 0.11
CD44-209ENST00000433892 BLMP54132 1417 aaPredicted RBP15.7■□□□□ 0.1
CD44-209ENST00000433892 CLASP1Q7Z460 1538 aa15.69■□□□□ 0.1
CD44-209ENST00000433892 MADDQ8WXG6 1647 aa15.69■□□□□ 0.1
CD44-209ENST00000433892 KNSTRNQ9Y448 316 aa15.69■□□□□ 0.1
CD44-209ENST00000433892 WDR7Q9Y4E6 1490 aa15.69■□□□□ 0.1
CD44-209ENST00000433892 ZFYVE16Q7Z3T8 1539 aa15.68■□□□□ 0.1
CD44-209ENST00000433892 AEBP2Q6ZN18 517 aaPredicted RBP15.68■□□□□ 0.1
CD44-209ENST00000433892 RTEL1-TNFRSF6BF6WH68 1400 aa15.68■□□□□ 0.1
CD44-209ENST00000433892 TRPM2O94759 1503 aa15.68■□□□□ 0.1
CD44-209ENST00000433892 ADAMTS8Q9UP79 889 aa15.68■□□□□ 0.1
CD44-209ENST00000433892 PLIN1O60240 522 aa15.67■□□□□ 0.1
CD44-209ENST00000433892 NOP58Q9Y2X3 529 aaKnown RBP15.67■□□□□ 0.1
CD44-209ENST00000433892 INSRP06213 1382 aa15.67■□□□□ 0.1
CD44-209ENST00000433892 PTPRTO14522 1441 aa15.67■□□□□ 0.1
CD44-209ENST00000433892 MYT1LQ9UL68 1186 aa15.66■□□□□ 0.1
CD44-209ENST00000433892 PAK3O75914 559 aaPredicted RBP15.65■□□□□ 0.1
CD44-209ENST00000433892 PPP2R1AP30153 589 aa15.65■□□□□ 0.1
CD44-209ENST00000433892 IQGAP1P46940 1657 aa15.65■□□□□ 0.1
CD44-209ENST00000433892 ZMYM4Q5VZL5 1548 aa15.65■□□□□ 0.1
CD44-209ENST00000433892 CLTCL1P53675 1640 aa15.65■□□□□ 0.1
CD44-209ENST00000433892 SCAF11Q99590 1463 aaKnown RBP15.65■□□□□ 0.1
CD44-209ENST00000433892 AMER1Q5JTC6 1135 aaPredicted RBP15.65■□□□□ 0.1
CD44-209ENST00000433892 SPHKAPQ2M3C7 1700 aa15.65■□□□□ 0.1
CD44-209ENST00000433892 KIF3BO15066 747 aa15.64■□□□□ 0.09
CD44-209ENST00000433892 ANP32AP39687 249 aaKnown RBP15.64■□□□□ 0.09
CD44-209ENST00000433892 CDCA8Q53HL2 280 aa15.64■□□□□ 0.09
CD44-209ENST00000433892 CEP152O94986 1710 aa15.63■□□□□ 0.09
CD44-209ENST00000433892 STAC3Q96MF2 364 aa15.63■□□□□ 0.09
CD44-209ENST00000433892 KANK1Q14678 1352 aa15.63■□□□□ 0.09
CD44-209ENST00000433892 ARAP3Q8WWN8 1544 aa15.63■□□□□ 0.09
CD44-209ENST00000433892 WDR43Q15061 677 aaKnown RBP eCLIP15.63■□□□□ 0.09
CD44-209ENST00000433892 SCAPERQ9BY12 1400 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms