RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 CC2D1BQ5T0F9 858 aaKnown RBP17.18■□□□□ 0.34
PTCH1-207ENST00000429896 HNRNPUQ00839 825 aaKnown RBP eCLIP17.18■□□□□ 0.34
PTCH1-207ENST00000429896 NUDCQ9Y266 331 aa17.18■□□□□ 0.34
PTCH1-207ENST00000429896 THEMISQ8N1K5 641 aaPredicted RBP17.18■□□□□ 0.34
PTCH1-207ENST00000429896 SOX12O15370 315 aa17.17■□□□□ 0.34
PTCH1-207ENST00000429896 PTPN23Q9H3S7 1636 aa17.16■□□□□ 0.34
PTCH1-207ENST00000429896 STAC3Q96MF2 364 aa17.16■□□□□ 0.34
PTCH1-207ENST00000429896 ROCK1Q13464 1354 aa17.16■□□□□ 0.34
PTCH1-207ENST00000429896 NGDNQ8NEJ9 315 aaKnown RBP17.15■□□□□ 0.34
PTCH1-207ENST00000429896 MORC1Q86VD1 984 aa17.14■□□□□ 0.33
PTCH1-207ENST00000429896 TXNDC2Q86VQ3 553 aa17.14■□□□□ 0.33
PTCH1-207ENST00000429896 ABCC5O15440 1437 aa17.13■□□□□ 0.33
PTCH1-207ENST00000429896 TERF2IPQ9NYB0 399 aa17.13■□□□□ 0.33
PTCH1-207ENST00000429896 GPATCH8Q9UKJ3 1502 aaKnown RBP17.13■□□□□ 0.33
PTCH1-207ENST00000429896 HFM1A2PYH4 1435 aa17.13■□□□□ 0.33
PTCH1-207ENST00000429896 SLC52A1Q9NWF4 448 aa17.13■□□□□ 0.33
PTCH1-207ENST00000429896 CHD1O14646 1710 aa17.13■□□□□ 0.33
PTCH1-207ENST00000429896 NUTM2FA1L443 756 aa17.12■□□□□ 0.33
PTCH1-207ENST00000429896 MAPK8IP3Q9UPT6 1336 aa17.1■□□□□ 0.33
PTCH1-207ENST00000429896 PPP6R1Q9UPN7 881 aa17.08■□□□□ 0.33
PTCH1-207ENST00000429896 ANKLE2Q86XL3 938 aa17.07■□□□□ 0.32
PTCH1-207ENST00000429896 ARXQ96QS3 562 aa17.07■□□□□ 0.32
PTCH1-207ENST00000429896 EVC2Q86UK5 1308 aa17.07■□□□□ 0.32
PTCH1-207ENST00000429896 U2SURPO15042 1029 aaKnown RBP17.07■□□□□ 0.32
PTCH1-207ENST00000429896 KIAA1107Q9UPP5 1409 aa17.07■□□□□ 0.32
PTCH1-207ENST00000429896 MINK1Q8N4C8 1332 aaPredicted RBP17.06■□□□□ 0.32
PTCH1-207ENST00000429896 ZNF518AQ6AHZ1 1483 aa17.06■□□□□ 0.32
PTCH1-207ENST00000429896 PNNQ9H307 717 aaKnown RBP17.05■□□□□ 0.32
PTCH1-207ENST00000429896 DHX29Q7Z478 1369 aaKnown RBP17.05■□□□□ 0.32
PTCH1-207ENST00000429896 ITSN2Q9NZM3 1697 aa17.04■□□□□ 0.32
PTCH1-207ENST00000429896 CSB-PGBD3P0DP91 1061 aa17.04■□□□□ 0.32
PTCH1-207ENST00000429896 ATF3P18847 181 aa17.04■□□□□ 0.32
PTCH1-207ENST00000429896 SAMD9Q5K651 1589 aa17.03■□□□□ 0.32
PTCH1-207ENST00000429896 MIER1Q8N108 512 aa17.03■□□□□ 0.32
PTCH1-207ENST00000429896 KTN1Q86UP2 1357 aaKnown RBP17.02■□□□□ 0.32
PTCH1-207ENST00000429896 ST20-MTHFSA0A0A6YYL1 179 aa17.02■□□□□ 0.32
PTCH1-207ENST00000429896 SYCP2Q9BX26 1530 aa17.01■□□□□ 0.31
PTCH1-207ENST00000429896 NAIPQ13075 1403 aa17■□□□□ 0.31
PTCH1-207ENST00000429896 RPGRIP1LQ68CZ1 1315 aa17■□□□□ 0.31
PTCH1-207ENST00000429896 UHRF1BP1LA0JNW5 1464 aa17■□□□□ 0.31
PTCH1-207ENST00000429896 PROSER2Q86WR7 435 aaPredicted RBP16.99■□□□□ 0.31
PTCH1-207ENST00000429896 EIF5BO60841 1220 aaKnown RBP16.99■□□□□ 0.31
PTCH1-207ENST00000429896 CCDC9Q9Y3X0 531 aaKnown RBP16.99■□□□□ 0.31
PTCH1-207ENST00000429896 NCOA1Q15788 1441 aa16.99■□□□□ 0.31
PTCH1-207ENST00000429896 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.99■□□□□ 0.31
PTCH1-207ENST00000429896 HSP90AA1P07900 732 aaKnown RBP16.98■□□□□ 0.31
PTCH1-207ENST00000429896 CEBPAP49715 358 aaPredicted RBP16.98■□□□□ 0.31
PTCH1-207ENST00000429896 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.98■□□□□ 0.31
PTCH1-207ENST00000429896 ERBINQ96RT1 1412 aa16.98■□□□□ 0.31
PTCH1-207ENST00000429896 CENPJQ9HC77 1338 aaPredicted RBP16.98■□□□□ 0.31
PTCH1-207ENST00000429896 ABCC10Q5T3U5 1492 aa16.98■□□□□ 0.31
PTCH1-207ENST00000429896 USP47Q96K76 1375 aa16.98■□□□□ 0.31
PTCH1-207ENST00000429896 TMEM132EQ6IEE7 984 aa16.98■□□□□ 0.31
PTCH1-207ENST00000429896 NEUROD2Q15784 382 aa16.97■□□□□ 0.31
PTCH1-207ENST00000429896 ANP32AP39687 249 aaKnown RBP16.97■□□□□ 0.31
PTCH1-207ENST00000429896 TRAPPC8Q9Y2L5 1435 aa16.97■□□□□ 0.31
PTCH1-207ENST00000429896 DNAJC5Q9H3Z4 198 aa16.96■□□□□ 0.31
PTCH1-207ENST00000429896 A2MP01023 1474 aa16.96■□□□□ 0.3
PTCH1-207ENST00000429896 PSME1Q06323 249 aa16.95■□□□□ 0.3
PTCH1-207ENST00000429896 CFAP70Q5T0N1 1121 aa16.94■□□□□ 0.3
PTCH1-207ENST00000429896 FBXO31Q5XUX0 539 aaPredicted RBP16.94■□□□□ 0.3
PTCH1-207ENST00000429896 LAS1LQ9Y4W2 734 aaKnown RBP16.94■□□□□ 0.3
PTCH1-207ENST00000429896 CFAP43Q8NDM7 1665 aa16.93■□□□□ 0.3
PTCH1-207ENST00000429896 DUOX2Q9NRD8 1548 aa16.93■□□□□ 0.3
PTCH1-207ENST00000429896 AMPHP49418 695 aa16.92■□□□□ 0.3
PTCH1-207ENST00000429896 KDM5BQ9UGL1 1544 aa16.92■□□□□ 0.3
PTCH1-207ENST00000429896 RALBP1Q15311 655 aa16.92■□□□□ 0.3
PTCH1-207ENST00000429896 ANKRD30BQ9BXX2 1392 aa16.91■□□□□ 0.3
PTCH1-207ENST00000429896 ABCA8O94911 1581 aa16.91■□□□□ 0.3
PTCH1-207ENST00000429896 FKBP8Q14318 412 aa16.9■□□□□ 0.3
PTCH1-207ENST00000429896 COG3Q96JB2 828 aa16.9■□□□□ 0.3
PTCH1-207ENST00000429896 SLC26A8Q96RN1 970 aa16.9■□□□□ 0.3
PTCH1-207ENST00000429896 MEX3CQ5U5Q3 659 aaKnown RBP16.89■□□□□ 0.29
PTCH1-207ENST00000429896 TNRQ92752 1358 aa16.89■□□□□ 0.29
PTCH1-207ENST00000429896 NEO1Q92859 1461 aa16.88■□□□□ 0.29
PTCH1-207ENST00000429896 RTF1Q92541 710 aaKnown RBP16.88■□□□□ 0.29
PTCH1-207ENST00000429896 PANK3Q9H999 370 aa16.88■□□□□ 0.29
PTCH1-207ENST00000429896 SENP3-EIF4A1A0A087X0R7 540 aa16.87■□□□□ 0.29
PTCH1-207ENST00000429896 CGNL1Q0VF96 1302 aa16.87■□□□□ 0.29
PTCH1-207ENST00000429896 RTEL1-TNFRSF6BF6WH68 1400 aa16.87■□□□□ 0.29
PTCH1-207ENST00000429896 NBR1Q14596 966 aa16.86■□□□□ 0.29
PTCH1-207ENST00000429896 PRAM1Q96QH2 718 aa16.86■□□□□ 0.29
PTCH1-207ENST00000429896 TCOF1Q13428 1488 aaKnown RBP16.86■□□□□ 0.29
PTCH1-207ENST00000429896 DMRT2Q9Y5R5 561 aa16.85■□□□□ 0.29
PTCH1-207ENST00000429896 U2AF1L5P0DN76 240 aaPredicted RBP16.85■□□□□ 0.29
PTCH1-207ENST00000429896 U2AF1Q01081 240 aaKnown RBP eCLIP16.85■□□□□ 0.29
PTCH1-207ENST00000429896 ESCO1Q5FWF5 840 aa16.84■□□□□ 0.29
PTCH1-207ENST00000429896 CABP2Q9NPB3 220 aa16.84■□□□□ 0.29
PTCH1-207ENST00000429896 EVA1CP58658 441 aa16.84■□□□□ 0.29
PTCH1-207ENST00000429896 LTV1Q96GA3 475 aaPredicted RBP16.84■□□□□ 0.29
PTCH1-207ENST00000429896 ERCC6L2Q5T890 1561 aa16.84■□□□□ 0.29
PTCH1-207ENST00000429896 ATP10AO60312 1499 aa16.84■□□□□ 0.29
PTCH1-207ENST00000429896 IDI1Q13907 227 aa16.84■□□□□ 0.29
PTCH1-207ENST00000429896 CFAP74Q9C0B2 1584 aa16.83■□□□□ 0.28
PTCH1-207ENST00000429896 GPRASP1Q5JY77 1395 aa16.82■□□□□ 0.28
PTCH1-207ENST00000429896 SHANK2Q9UPX8 1470 aa16.82■□□□□ 0.28
PTCH1-207ENST00000429896 IRX6P78412 446 aaPredicted RBP16.81■□□□□ 0.28
PTCH1-207ENST00000429896 FAM135AQ9P2D6 1515 aa16.81■□□□□ 0.28
PTCH1-207ENST00000429896 ZCCHC11Q5TAX3 1644 aaKnown RBP16.8■□□□□ 0.28
PTCH1-207ENST00000429896 ANP32BQ92688 251 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms