RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 PZPP20742 1482 aa14.87□□□□□ -0.03
CUX1-205ENST00000425244 KIF3BO15066 747 aa14.87□□□□□ -0.03
CUX1-205ENST00000425244 EIF4G2P78344 907 aaKnown RBP eCLIP14.87□□□□□ -0.031e-6■■■■■ 32.2
CUX1-205ENST00000425244 CFAP74Q9C0B2 1584 aa14.87□□□□□ -0.03
CUX1-205ENST00000425244 FKBP8Q14318 412 aa14.86□□□□□ -0.03
CUX1-205ENST00000425244 PLXNC1O60486 1568 aa14.86□□□□□ -0.03
CUX1-205ENST00000425244 DUOX2Q9NRD8 1548 aa14.86□□□□□ -0.03
CUX1-205ENST00000425244 POGZQ7Z3K3 1410 aa14.86□□□□□ -0.03
CUX1-205ENST00000425244 WASHC2AQ641Q2 1341 aa14.86□□□□□ -0.03
CUX1-205ENST00000425244 GLI2P10070 1586 aa14.85□□□□□ -0.03
CUX1-205ENST00000425244 NEO1Q92859 1461 aa14.85□□□□□ -0.03
CUX1-205ENST00000425244 RTEL1-TNFRSF6BF6WH68 1400 aa14.84□□□□□ -0.03
CUX1-205ENST00000425244 INO80Q9ULG1 1556 aaPredicted RBP14.83□□□□□ -0.04
CUX1-205ENST00000425244 KIF13AQ9H1H9 1805 aa14.82□□□□□ -0.04
CUX1-205ENST00000425244 KIDINS220Q9ULH0 1771 aa14.82□□□□□ -0.04
CUX1-205ENST00000425244 ANKRD30BQ9BXX2 1392 aa14.82□□□□□ -0.04
CUX1-205ENST00000425244 NEFLP07196 543 aa14.82□□□□□ -0.04
CUX1-205ENST00000425244 GGT6Q6P531 493 aa14.82□□□□□ -0.04
CUX1-205ENST00000425244 DNAJC5Q9H3Z4 198 aa14.82□□□□□ -0.04
CUX1-205ENST00000425244 ERBINQ96RT1 1412 aa14.82□□□□□ -0.04
CUX1-205ENST00000425244 FAM135AQ9P2D6 1515 aa14.8□□□□□ -0.04
CUX1-205ENST00000425244 NBPF8Q3BBV2 869 aa14.8□□□□□ -0.04
CUX1-205ENST00000425244 DHX29Q7Z478 1369 aaKnown RBP14.79□□□□□ -0.04
CUX1-205ENST00000425244 HNRNPUQ00839 825 aaKnown RBP eCLIP14.79□□□□□ -0.041e-6■■■■□ 21.8
CUX1-205ENST00000425244 HECW2Q9P2P5 1572 aa14.78□□□□□ -0.04
CUX1-205ENST00000425244 PPRC1Q5VV67 1664 aaKnown RBP14.78□□□□□ -0.04
CUX1-205ENST00000425244 RPRD2Q5VT52 1461 aaKnown RBP14.78□□□□□ -0.04
CUX1-205ENST00000425244 C11orf95C9JLR9 678 aaPredicted RBP14.78□□□□□ -0.04
CUX1-205ENST00000425244 TEX14Q8IWB6 1497 aa14.77□□□□□ -0.04
CUX1-205ENST00000425244 KDM5CP41229 1560 aa14.77□□□□□ -0.04
CUX1-205ENST00000425244 ZNF326Q5BKZ1 582 aaKnown RBP14.77□□□□□ -0.04
CUX1-205ENST00000425244 YEATS2Q9ULM3 1422 aa14.77□□□□□ -0.04
CUX1-205ENST00000425244 A2MP01023 1474 aa14.77□□□□□ -0.05
CUX1-205ENST00000425244 MLH3Q9UHC1 1453 aa14.76□□□□□ -0.05
CUX1-205ENST00000425244 ERICH6Q7L0X2 663 aa14.76□□□□□ -0.05
CUX1-205ENST00000425244 RICTORQ6R327 1708 aa14.76□□□□□ -0.05
CUX1-205ENST00000425244 UNC13BO14795 1591 aa14.75□□□□□ -0.05
CUX1-205ENST00000425244 ABCA6Q8N139 1617 aa14.74□□□□□ -0.05
CUX1-205ENST00000425244 TSHZ2Q9NRE2 1034 aa14.74□□□□□ -0.05
CUX1-205ENST00000425244 KDM5DQ9BY66 1539 aa14.74□□□□□ -0.05
CUX1-205ENST00000425244 RGL3Q3MIN7 710 aa14.73□□□□□ -0.05
CUX1-205ENST00000425244 KANK1Q14678 1352 aa14.73□□□□□ -0.05
CUX1-205ENST00000425244 CCDC7Q96M83 1385 aa14.73□□□□□ -0.05
CUX1-205ENST00000425244 CNTLNQ9NXG0 1405 aa14.73□□□□□ -0.05
CUX1-205ENST00000425244 COL17A1Q9UMD9 1497 aaPredicted RBP14.73□□□□□ -0.05
CUX1-205ENST00000425244 FRMPD1Q5SYB0 1578 aa14.72□□□□□ -0.05
CUX1-205ENST00000425244 KDM2AQ9Y2K7 1162 aa14.72□□□□□ -0.05
CUX1-205ENST00000425244 CNGB1Q14028 1251 aaPredicted RBP14.71□□□□□ -0.05
CUX1-205ENST00000425244 MLECQ14165 292 aa14.71□□□□□ -0.05
CUX1-205ENST00000425244 POLR3GLQ9BT43 218 aa14.71□□□□□ -0.05
CUX1-205ENST00000425244 IQGAP3Q86VI3 1631 aa14.71□□□□□ -0.05
CUX1-205ENST00000425244 CCDC184Q52MB2 194 aa14.71□□□□□ -0.06
CUX1-205ENST00000425244 WASHC2CQ9Y4E1 1318 aa14.7□□□□□ -0.06
CUX1-205ENST00000425244 DIP2CQ9Y2E4 1556 aa14.69□□□□□ -0.06
CUX1-205ENST00000425244 CCDC144AA2RUR9 1427 aa14.69□□□□□ -0.06
CUX1-205ENST00000425244 KIF7Q2M1P5 1343 aa14.69□□□□□ -0.06
CUX1-205ENST00000425244 MAGI2Q86UL8 1455 aa14.69□□□□□ -0.06
CUX1-205ENST00000425244 CFAP65Q6ZU64 1925 aaKnown RBP14.68□□□□□ -0.06
CUX1-205ENST00000425244 FAM9BQ8IZU0 186 aa14.68□□□□□ -0.06
CUX1-205ENST00000425244 PRKRIP1Q9H875 184 aaPredicted RBP14.68□□□□□ -0.06
CUX1-205ENST00000425244 MRS2Q9HD23 443 aa14.67□□□□□ -0.06
CUX1-205ENST00000425244 DCAF11Q8TEB1 546 aa14.67□□□□□ -0.06
CUX1-205ENST00000425244 DEPDC5O75140 1603 aa14.66□□□□□ -0.06
CUX1-205ENST00000425244 EIF2AK4Q9P2K8 1649 aaKnown RBP14.66□□□□□ -0.06
CUX1-205ENST00000425244 IRX6P78412 446 aaPredicted RBP14.66□□□□□ -0.06
CUX1-205ENST00000425244 PLA2R1Q13018 1463 aa14.66□□□□□ -0.06
CUX1-205ENST00000425244 ARID4BQ4LE39 1312 aaPredicted RBP14.65□□□□□ -0.06
CUX1-205ENST00000425244 MROH1Q8NDA8 1641 aa14.65□□□□□ -0.06
CUX1-205ENST00000425244 E9PCH4 1651 aa14.65□□□□□ -0.06
CUX1-205ENST00000425244 SPATA31E1Q6ZUB1 1445 aa14.64□□□□□ -0.07
CUX1-205ENST00000425244 CEP152O94986 1710 aa14.64□□□□□ -0.07
CUX1-205ENST00000425244 PRDM15P57071 1507 aaPredicted RBP14.64□□□□□ -0.07
CUX1-205ENST00000425244 CHGAP10645 457 aaKnown RBP14.62□□□□□ -0.07
CUX1-205ENST00000425244 USP47Q96K76 1375 aa14.62□□□□□ -0.07
CUX1-205ENST00000425244 ATP10AO60312 1499 aa14.62□□□□□ -0.07
CUX1-205ENST00000425244 ZMYM4Q5VZL5 1548 aa14.62□□□□□ -0.07
CUX1-205ENST00000425244 TET3O43151 1660 aa14.61□□□□□ -0.07
CUX1-205ENST00000425244 RNF17Q9BXT8 1623 aaKnown RBP14.59□□□□□ -0.07
CUX1-205ENST00000425244 VWDEQ8N2E2 1590 aa14.59□□□□□ -0.07
CUX1-205ENST00000425244 UGGT1Q9NYU2 1555 aa14.59□□□□□ -0.07
CUX1-205ENST00000425244 PLPPR3Q6T4P5 718 aa14.57□□□□□ -0.08
CUX1-205ENST00000425244 CARD11Q9BXL7 1154 aa14.57□□□□□ -0.08
CUX1-205ENST00000425244 NPATQ14207 1427 aa14.57□□□□□ -0.08
CUX1-205ENST00000425244 EFCAB6Q5THR3 1501 aa14.57□□□□□ -0.08
CUX1-205ENST00000425244 SPHKAPQ2M3C7 1700 aa14.57□□□□□ -0.08
CUX1-205ENST00000425244 SENP3Q9H4L4 574 aaPredicted RBP14.56□□□□□ -0.08
CUX1-205ENST00000425244 ABCC3O15438 1527 aa14.56□□□□□ -0.08
CUX1-205ENST00000425244 SIGLEC1Q9BZZ2 1709 aa14.56□□□□□ -0.08
CUX1-205ENST00000425244 ESF1Q9H501 851 aaKnown RBP14.56□□□□□ -0.08
CUX1-205ENST00000425244 FBXO31Q5XUX0 539 aaPredicted RBP14.55□□□□□ -0.08
CUX1-205ENST00000425244 ANP32EQ9BTT0 268 aa14.53□□□□□ -0.08
CUX1-205ENST00000425244 TRPM2O94759 1503 aa14.53□□□□□ -0.08
CUX1-205ENST00000425244 ARHGEF40Q8TER5 1519 aa14.53□□□□□ -0.08
CUX1-205ENST00000425244 CLTCL1P53675 1640 aa14.53□□□□□ -0.08
CUX1-205ENST00000425244 PTPRTO14522 1441 aa14.52□□□□□ -0.08
CUX1-205ENST00000425244 SENP3-EIF4A1A0A087X0R7 540 aa14.52□□□□□ -0.09
CUX1-205ENST00000425244 CAMSAP1Q5T5Y3 1602 aa14.52□□□□□ -0.09
CUX1-205ENST00000425244 BCORL1Q5H9F3 1711 aa14.51□□□□□ -0.09
CUX1-205ENST00000425244 NUTM2DQ5VT03 806 aaPredicted RBP14.51□□□□□ -0.09
CUX1-205ENST00000425244 ZBED9Q6R2W3 1325 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms