RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.97□□□□□ -0.655e-24■■■■■ 156.6
CUX1-205ENST00000425244 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.57□□□□□ -0.568e-7■■■■■ 154.8
CUX1-205ENST00000425244 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.91□□□□□ -0.666e-7■■■■■ 139.2
CUX1-205ENST00000425244 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.47□□□□□ -0.573e-7■■■■■ 94
CUX1-205ENST00000425244 NIPBLQ6KC79 2804 aaeCLIP8.1□□□□□ -1.113e-10■■■■■ 76.4
CUX1-205ENST00000425244 PABPC4Q13310 644 aaKnown RBP eCLIP11.73□□□□□ -0.532e-20■■■■■ 62.1
CUX1-205ENST00000425244 NIP7Q9Y221 180 aaKnown RBP eCLIP12.7□□□□□ -0.382e-10■■■■■ 60.1
CUX1-205ENST00000425244 SF3B1O75533 1304 aaKnown RBP eCLIP10.86□□□□□ -0.674e-6■■■■■ 58.5
CUX1-205ENST00000425244 AGGF1Q8N302 714 aaeCLIP11.05□□□□□ -0.642e-7■■■■■ 57.8
CUX1-205ENST00000425244 WRNQ14191 1432 aaPredicted RBP eCLIP16.99■□□□□ 0.312e-6■■■■■ 54.1
CUX1-205ENST00000425244 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.52□□□□□ -0.736e-7■■■■■ 53.4
CUX1-205ENST00000425244 AARSP49588 968 aaKnown RBP eCLIP11.66□□□□□ -0.542e-6■■■■■ 51.2
CUX1-205ENST00000425244 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.82□□□□□ -0.526e-12■■■■■ 49.8
CUX1-205ENST00000425244 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.94□□□□□ -0.56e-7■■■■■ 48.9
CUX1-205ENST00000425244 RPS11P62280 158 aaKnown RBP eCLIP9.71□□□□□ -0.856e-6■■■■■ 44.3
CUX1-205ENST00000425244 PTBP1P26599 531 aaKnown RBP eCLIP9.77□□□□□ -0.854e-11■■■■■ 42.8
CUX1-205ENST00000425244 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.08□□□□□ -0.644e-7■■■■■ 40.8
CUX1-205ENST00000425244 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.16□□□□□ -0.786e-6■■■■■ 38.3
CUX1-205ENST00000425244 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.73□□□□□ -0.536e-12■■■■■ 36.6
CUX1-205ENST00000425244 PCBP1Q15365 356 aaKnown RBP eCLIP11.01□□□□□ -0.656e-6■■■■■ 34.5
CUX1-205ENST00000425244 DKC1O60832 514 aaKnown RBP eCLIP11.35□□□□□ -0.591e-7■■■■■ 34.5
CUX1-205ENST00000425244 PCBP2Q15366 365 aaKnown RBP eCLIP10.45□□□□□ -0.741e-6■■■■■ 33.2
CUX1-205ENST00000425244 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.26□□□□□ -0.778e-7■■■■■ 33
CUX1-205ENST00000425244 EIF4G2P78344 907 aaKnown RBP eCLIP14.87□□□□□ -0.031e-6■■■■■ 32.2
CUX1-205ENST00000425244 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.25■□□□□ 0.037e-8■■■■■ 32
CUX1-205ENST00000425244 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.85□□□□□ -0.831e-6■■■■■ 31.5
CUX1-205ENST00000425244 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.91□□□□□ -0.662e-6■■■■■ 29.2
CUX1-205ENST00000425244 HNRNPLP14866 589 aaKnown RBP eCLIP10.74□□□□□ -0.696e-8■■■■■ 28.9
CUX1-205ENST00000425244 SRSF7Q16629 238 aaKnown RBP eCLIP9.04□□□□□ -0.961e-8■■■■■ 28.4
CUX1-205ENST00000425244 U2AF2P26368 475 aaKnown RBP eCLIP12.25□□□□□ -0.451e-7■■■■■ 27.9
CUX1-205ENST00000425244 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.38□□□□□ -0.593e-7■■■■■ 27.8
CUX1-205ENST00000425244 AATFQ9NY61 560 aaKnown RBP eCLIP12.26□□□□□ -0.451e-6■■■■■ 27.8
CUX1-205ENST00000425244 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.38□□□□□ -1.073e-7■■■■■ 26.8
CUX1-205ENST00000425244 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.89□□□□□ -0.671e-8■■■■□ 26.3
CUX1-205ENST00000425244 AQRO60306 1485 aaKnown RBP eCLIP16.37■□□□□ 0.214e-7■■■■□ 26.1
CUX1-205ENST00000425244 TARDBPQ13148 414 aaKnown RBP eCLIP10.07□□□□□ -0.89e-7■■■■□ 26.1
CUX1-205ENST00000425244 ZC3H11AO75152 810 aaKnown RBP eCLIP11.32□□□□□ -0.63e-6■■■■□ 25.7
CUX1-205ENST00000425244 METAP2P50579 478 aaKnown RBP eCLIP12.37□□□□□ -0.433e-6■■■■□ 24.7
CUX1-205ENST00000425244 HNRNPKP61978 463 aaKnown RBP eCLIP9.86□□□□□ -0.831e-6■■■■□ 24.1
CUX1-205ENST00000425244 FUSP35637 526 aaKnown RBP eCLIP6.8□□□□□ -1.325e-7■■■■□ 23.7
CUX1-205ENST00000425244 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.2□□□□□ -0.782e-10■■■■□ 23.5
CUX1-205ENST00000425244 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP10.65□□□□□ -0.71e-6■■■■□ 23.3
CUX1-205ENST00000425244 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.73□□□□□ -0.534e-6■■■■□ 23.2
CUX1-205ENST00000425244 MATR3P43243 847 aaKnown RBP eCLIP11.76□□□□□ -0.535e-7■■■■□ 22.9
CUX1-205ENST00000425244 QKIQ96PU8 341 aaKnown RBP eCLIP10.98□□□□□ -0.656e-15■■■■□ 22.1
CUX1-205ENST00000425244 HNRNPUQ00839 825 aaKnown RBP eCLIP14.79□□□□□ -0.041e-6■■■■□ 21.8
CUX1-205ENST00000425244 ILF3Q12906 894 aaKnown RBP eCLIP9.95□□□□□ -0.824e-7■■■■□ 21.7
CUX1-205ENST00000425244 FMR1Q06787 632 aaKnown RBP eCLIP12.16□□□□□ -0.464e-6■■■■□ 21.6
CUX1-205ENST00000425244 AKAP1Q92667 903 aaKnown RBP eCLIP9.74□□□□□ -0.851e-6■■■■□ 21.5
CUX1-205ENST00000425244 TIA1P31483 386 aaKnown RBP eCLIP10.23□□□□□ -0.771e-6■■■■□ 21
CUX1-205ENST00000425244 EFTUD2Q15029 972 aaKnown RBP eCLIP11.16□□□□□ -0.628e-8■■■■□ 20.9
CUX1-205ENST00000425244 SF3B4Q15427 424 aaKnown RBP eCLIP9.91□□□□□ -0.825e-6■■■■□ 20.8
CUX1-205ENST00000425244 SFPQP23246 707 aaKnown RBP eCLIP12.23□□□□□ -0.451e-6■■■■□ 20.4
CUX1-205ENST00000425244 RBM15Q96T37 977 aaKnown RBP eCLIP11.25□□□□□ -0.611e-11■■■■□ 20.4
CUX1-205ENST00000425244 RPS3P23396 243 aaKnown RBP eCLIP10.41□□□□□ -0.741e-7■■■■□ 20.3
CUX1-205ENST00000425244 KHSRPQ92945 711 aaKnown RBP eCLIP11.02□□□□□ -0.643e-7■■■■□ 19.9
CUX1-205ENST00000425244 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.98□□□□□ -0.653e-6■■■■□ 19.4
CUX1-205ENST00000425244 HNRNPMP52272 730 aaKnown RBP eCLIP15.26■□□□□ 0.039e-7■■■□□ 19.2
CUX1-205ENST00000425244 RBM5P52756 815 aaKnown RBP eCLIP12.17□□□□□ -0.464e-7■■■□□ 19.1
CUX1-205ENST00000425244 GTF2F1P35269 517 aaKnown RBP eCLIP12.3□□□□□ -0.442e-8■■■□□ 18.7
CUX1-205ENST00000425244 NONOQ15233 471 aaKnown RBP eCLIP11.94□□□□□ -0.51e-6■■■□□ 18.5
CUX1-205ENST00000425244 CSTF2P33240 577 aaKnown RBP eCLIP10.03□□□□□ -0.82e-6■■■□□ 18.4
CUX1-205ENST00000425244 RBFOX2O43251 390 aaKnown RBP eCLIP8.75□□□□□ -1.016e-7■■■□□ 18.3
CUX1-205ENST00000425244 PPIGQ13427 754 aaKnown RBP eCLIP10.73□□□□□ -0.698e-7■■■□□ 18.1
CUX1-205ENST00000425244 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.09□□□□□ -0.473e-7■■■□□ 17.9
CUX1-205ENST00000425244 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP11.21□□□□□ -0.624e-7■■■□□ 17.6
CUX1-205ENST00000425244 LSM11P83369 360 aaKnown RBP eCLIP10.06□□□□□ -0.85e-6■■■□□ 16.8
CUX1-205ENST00000425244 DDX6P26196 483 aaKnown RBP eCLIP10.43□□□□□ -0.749e-7■■■□□ 16.7
CUX1-205ENST00000425244 EIF3HO15372 352 aaKnown RBP eCLIP11.52□□□□□ -0.571e-7■■■□□ 16.5
CUX1-205ENST00000425244 NKRFO15226 690 aaKnown RBP eCLIP11.87□□□□□ -0.516e-7■■■□□ 16.5
CUX1-205ENST00000425244 EWSR1Q01844 656 aaKnown RBP eCLIP9.1□□□□□ -0.952e-6■■■□□ 16.3
CUX1-205ENST00000425244 YBX3P16989 372 aaKnown RBP eCLIP11.98□□□□□ -0.493e-6■■■□□ 15.7
CUX1-205ENST00000425244 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.43□□□□□ -0.427e-7■■■□□ 15.6
CUX1-205ENST00000425244 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.55□□□□□ -0.561e-6■■■□□ 15.3
CUX1-205ENST00000425244 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.18□□□□□ -0.784e-7■■■□□ 15
CUX1-205ENST00000425244 PUM1Q14671 1186 aaKnown RBP eCLIP10.11□□□□□ -0.795e-7■■■□□ 14.6
CUX1-205ENST00000425244 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.68□□□□□ -0.869e-7■■□□□ 14.3
CUX1-205ENST00000425244 LARP4Q71RC2 724 aaKnown RBP eCLIP10.61□□□□□ -0.713e-6■■□□□ 13.7
CUX1-205ENST00000425244 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15□□□□□ -0.011e-6■■□□□ 13.7
CUX1-205ENST00000425244 HNRNPCP07910 306 aaKnown RBP eCLIP10.29□□□□□ -0.767e-7■■□□□ 13.7
CUX1-205ENST00000425244 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.25□□□□□ -0.933e-6■■□□□ 13.5
CUX1-205ENST00000425244 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.28■□□□□ 0.042e-6■■□□□ 13.4
CUX1-205ENST00000425244 DDX3XO00571 662 aaKnown RBP eCLIP11.58□□□□□ -0.561e-8■■□□□ 13.3
CUX1-205ENST00000425244 ZNF622Q969S3 477 aaKnown RBP eCLIP12.4□□□□□ -0.421e-7■■□□□ 13.1
CUX1-205ENST00000425244 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.12□□□□□ -0.317e-7■■□□□ 13.1
CUX1-205ENST00000425244 NCBP2P52298 156 aaKnown RBP eCLIP10.07□□□□□ -0.82e-6■■□□□ 13
CUX1-205ENST00000425244 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.08□□□□□ -0.488e-7■■□□□ 12.7
CUX1-205ENST00000425244 NOLC1Q14978 699 aaKnown RBP eCLIP12.49□□□□□ -0.413e-6■■□□□ 12.3
CUX1-205ENST00000425244 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.59□□□□□ -0.391e-9■■□□□ 12.2
CUX1-205ENST00000425244 SMNDC1O75940 238 aaKnown RBP eCLIP10.85□□□□□ -0.671e-5■■□□□ 11.9
CUX1-205ENST00000425244 TROVE2P10155 538 aaKnown RBP eCLIP11.05□□□□□ -0.643e-6■■□□□ 11.8
CUX1-205ENST00000425244 PRPF4O43172 522 aaKnown RBP eCLIP11.12□□□□□ -0.633e-6■■□□□ 11.6
CUX1-205ENST00000425244 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.68□□□□□ -0.864e-6■■□□□ 11.4
CUX1-205ENST00000425244 U2AF1Q01081 240 aaKnown RBP eCLIP13.77□□□□□ -0.215e-6■□□□□ 11.2
CUX1-205ENST00000425244 DDX21Q9NR30 783 aaKnown RBP eCLIP12.95□□□□□ -0.341e-7■□□□□ 10.9
CUX1-205ENST00000425244 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.91□□□□□ -0.183e-6■□□□□ 10.3
CUX1-205ENST00000425244 GPKOWQ92917 476 aaPredicted RBP eCLIP12.08□□□□□ -0.487e-6■□□□□ 10
CUX1-205ENST00000425244 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.2□□□□□ -0.467e-6■□□□□ 9.2
CUX1-205ENST00000425244 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.13□□□□□ -0.633e-6■□□□□ 8.8
Retrieved 99 of 99 RNA–protein pairs in 35.2 ms