RNA–Protein interactions for RNA: ENST00000410828.1

RNU4-53P-201, Transcript of RNA, U4 small nuclear 53, pseudogene, humanhuman

BASIC

Gene RNU4-53P, Length 140 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-53P-201ENST00000410828 ZNF644Q9H582 1327 aaPredicted RBP3.85□□□□□ -1.79
RNU4-53P-201ENST00000410828 RTEL1-TNFRSF6BF6WH68 1400 aa3.85□□□□□ -1.79
RNU4-53P-201ENST00000410828 MED14O60244 1454 aa3.85□□□□□ -1.79
RNU4-53P-201ENST00000410828 PZPP20742 1482 aa3.85□□□□□ -1.79
RNU4-53P-201ENST00000410828 NLRP1Q9C000 1473 aa3.85□□□□□ -1.79
RNU4-53P-201ENST00000410828 LRRC7Q96NW7 1537 aa3.85□□□□□ -1.79
RNU4-53P-201ENST00000410828 DNMT1P26358 1616 aaKnown RBP3.84□□□□□ -1.79
RNU4-53P-201ENST00000410828 PREX2Q70Z35 1606 aa3.84□□□□□ -1.79
RNU4-53P-201ENST00000410828 ZNF142P52746 1687 aaPredicted RBP3.84□□□□□ -1.79
RNU4-53P-201ENST00000410828 TSPY4P0CV99 314 aa3.84□□□□□ -1.79
RNU4-53P-201ENST00000410828 TSPY10P0CW01 314 aa3.84□□□□□ -1.79
RNU4-53P-201ENST00000410828 TXNDC2Q86VQ3 553 aa3.84□□□□□ -1.79
RNU4-53P-201ENST00000410828 MTUS2Q5JR59 1369 aa3.84□□□□□ -1.79
RNU4-53P-201ENST00000410828 FAM135BQ49AJ0 1406 aa3.84□□□□□ -1.79
RNU4-53P-201ENST00000410828 PLXNC1O60486 1568 aa3.84□□□□□ -1.8
RNU4-53P-201ENST00000410828 ITSN2Q9NZM3 1697 aa3.84□□□□□ -1.8
RNU4-53P-201ENST00000410828 CDC42BPBQ9Y5S2 1711 aa3.84□□□□□ -1.8
RNU4-53P-201ENST00000410828 CHIC1Q5VXU3 224 aa3.83□□□□□ -1.8
RNU4-53P-201ENST00000410828 EID1Q9Y6B2 187 aa3.83□□□□□ -1.8
RNU4-53P-201ENST00000410828 VWDEQ8N2E2 1590 aa3.83□□□□□ -1.8
RNU4-53P-201ENST00000410828 NEURL4Q96JN8 1562 aa3.83□□□□□ -1.8
RNU4-53P-201ENST00000410828 UGGT1Q9NYU2 1555 aa3.83□□□□□ -1.8
RNU4-53P-201ENST00000410828 CLTCQ00610 1675 aaKnown RBP3.83□□□□□ -1.8
RNU4-53P-201ENST00000410828 SUPT6HQ7KZ85 1726 aaKnown RBP3.83□□□□□ -1.8
RNU4-53P-201ENST00000410828 ALKQ9UM73 1620 aa3.82□□□□□ -1.8
RNU4-53P-201ENST00000410828 FYCO1Q9BQS8 1478 aa3.82□□□□□ -1.8
RNU4-53P-201ENST00000410828 MBD5Q9P267 1494 aa3.82□□□□□ -1.8
RNU4-53P-201ENST00000410828 KCNA6P17658 529 aa3.82□□□□□ -1.8
RNU4-53P-201ENST00000410828 LTKP29376 864 aa3.82□□□□□ -1.8
RNU4-53P-201ENST00000410828 ZNF772Q68DY9 489 aaPredicted RBP3.82□□□□□ -1.8
RNU4-53P-201ENST00000410828 PROSER2Q86WR7 435 aaPredicted RBP3.82□□□□□ -1.8
RNU4-53P-201ENST00000410828 UPF1Q92900 1129 aaKnown RBP eCLIP3.82□□□□□ -1.8
RNU4-53P-201ENST00000410828 STAG3Q9UJ98 1225 aa3.82□□□□□ -1.8
RNU4-53P-201ENST00000410828 INO80Q9ULG1 1556 aaPredicted RBP3.81□□□□□ -1.8
RNU4-53P-201ENST00000410828 KDM5DQ9BY66 1539 aa3.81□□□□□ -1.8
RNU4-53P-201ENST00000410828 SCAF11Q99590 1463 aaKnown RBP3.81□□□□□ -1.8
RNU4-53P-201ENST00000410828 TMEM94Q12767 1356 aa3.81□□□□□ -1.8
RNU4-53P-201ENST00000410828 SLAIN2Q9P270 581 aa3.81□□□□□ -1.8
RNU4-53P-201ENST00000410828 DEPDC5O75140 1603 aa3.81□□□□□ -1.8
RNU4-53P-201ENST00000410828 CCDC141Q6ZP82 1450 aa3.8□□□□□ -1.8
RNU4-53P-201ENST00000410828 JCADQ9P266 1359 aa3.8□□□□□ -1.8
RNU4-53P-201ENST00000410828 RXRBP28702 533 aa3.8□□□□□ -1.8
RNU4-53P-201ENST00000410828 MEX3CQ5U5Q3 659 aaKnown RBP3.8□□□□□ -1.8
RNU4-53P-201ENST00000410828 TRIM52Q96A61 297 aa3.8□□□□□ -1.8
RNU4-53P-201ENST00000410828 RBM33Q96EV2 1170 aaKnown RBP3.8□□□□□ -1.8
RNU4-53P-201ENST00000410828 BCANQ96GW7 911 aa3.8□□□□□ -1.8
RNU4-53P-201ENST00000410828 RNF17Q9BXT8 1623 aaKnown RBP3.8□□□□□ -1.8
RNU4-53P-201ENST00000410828 ERVK-7P63135 1459 aa3.79□□□□□ -1.8
RNU4-53P-201ENST00000410828 CEP162Q5TB80 1403 aa3.79□□□□□ -1.8
RNU4-53P-201ENST00000410828 MSH6P52701 1360 aa3.79□□□□□ -1.8
RNU4-53P-201ENST00000410828 CDC42BPAQ5VT25 1732 aa3.79□□□□□ -1.8
RNU4-53P-201ENST00000410828 SPATA31A6Q5VVP1 1343 aa3.79□□□□□ -1.8
RNU4-53P-201ENST00000410828 IQGAP1P46940 1657 aa3.79□□□□□ -1.8
RNU4-53P-201ENST00000410828 ADGBQ8N7X0 1667 aa3.79□□□□□ -1.8
RNU4-53P-201ENST00000410828 SLC26A8Q96RN1 970 aa3.79□□□□□ -1.8
RNU4-53P-201ENST00000410828 SYNMO15061 1565 aa3.79□□□□□ -1.8
RNU4-53P-201ENST00000410828 POLR1AO95602 1720 aaPredicted RBP3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 TMEM2Q9UHN6 1383 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 HDGFP51858 240 aaKnown RBP3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 IDI1Q13907 227 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 FOXD1Q16676 465 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 C14orf37Q86TY3 774 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 SRCAPQ6ZRS2 3230 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 NCOA2Q15596 1464 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 LRRC9Q6ZRR7 1453 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 ARHGAP23Q9P227 1491 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 LRRIQ1Q96JM4 1722 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 ARHGAP31Q2M1Z3 1444 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 FGD6Q6ZV73 1430 aa3.78□□□□□ -1.8
RNU4-53P-201ENST00000410828 ABCC3O15438 1527 aa3.77□□□□□ -1.81
RNU4-53P-201ENST00000410828 SLIT1O75093 1534 aa3.77□□□□□ -1.81
RNU4-53P-201ENST00000410828 CADPS2Q86UW7 1296 aa3.77□□□□□ -1.81
RNU4-53P-201ENST00000410828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP3.77□□□□□ -1.81
RNU4-53P-201ENST00000410828 SLC52A1Q9NWF4 448 aa3.77□□□□□ -1.81
RNU4-53P-201ENST00000410828 CAMSAP2Q08AD1 1489 aa3.77□□□□□ -1.81
RNU4-53P-201ENST00000410828 KANK1Q14678 1352 aa3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 PRDM15P57071 1507 aaPredicted RBP3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 EHBP1L1Q8N3D4 1523 aa3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 NUTM2BA6NNL0 878 aaPredicted RBP3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 NUTM2EB1AL46 878 aaPredicted RBP3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 PPP1R15AO75807 674 aaPredicted RBP3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 ATF3P18847 181 aa3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 NUTM2AQ8IVF1 878 aaPredicted RBP3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 C19orf44Q9H6X5 657 aa3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 RRP7BPQ9NSQ0 103 aa3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 NCOA3Q9Y6Q9 1424 aa3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 STRCP1A6NGW2 1772 aa3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 TIAM1Q13009 1591 aa3.76□□□□□ -1.81
RNU4-53P-201ENST00000410828 AFF2P51816 1311 aa3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 NKTRP30414 1462 aaKnown RBP3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 RBM6P78332 1123 aaKnown RBP3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 NUTM2DQ5VT03 806 aaPredicted RBP3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 NGLY1Q96IV0 654 aa3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 QTRT2Q9H974 415 aaKnown RBP3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 ZRANB1Q9UGI0 708 aa3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 TBX22Q9Y458 520 aa3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 KIF15Q9NS87 1388 aa3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 MAP3K1Q13233 1512 aa3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 ZC3H13Q5T200 1668 aaKnown RBP3.75□□□□□ -1.81
RNU4-53P-201ENST00000410828 CDK12Q9NYV4 1490 aaPredicted RBP3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 306 ms