RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 ROCK1Q13464 1354 aa12.05□□□□□ -0.48
LIG4-202ENST00000405925 DISP1Q96F81 1524 aa12.04□□□□□ -0.48
LIG4-202ENST00000405925 GPATCH8Q9UKJ3 1502 aaKnown RBP12.04□□□□□ -0.48
LIG4-202ENST00000405925 ASXL2Q76L83 1435 aa12.04□□□□□ -0.48
LIG4-202ENST00000405925 KIAA1107Q9UPP5 1409 aa12.04□□□□□ -0.48
LIG4-202ENST00000405925 KTN1Q86UP2 1357 aaKnown RBP12.03□□□□□ -0.48
LIG4-202ENST00000405925 MAPK8IP3Q9UPT6 1336 aa12.03□□□□□ -0.48
LIG4-202ENST00000405925 FANCAO15360 1455 aa12.03□□□□□ -0.48
LIG4-202ENST00000405925 PAK3O75914 559 aaPredicted RBP12.02□□□□□ -0.48
LIG4-202ENST00000405925 NCOA1Q15788 1441 aa12.02□□□□□ -0.49
LIG4-202ENST00000405925 MINK1Q8N4C8 1332 aaPredicted RBP12.02□□□□□ -0.49
LIG4-202ENST00000405925 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.01□□□□□ -0.49
LIG4-202ENST00000405925 TMEM132EQ6IEE7 984 aa12.01□□□□□ -0.49
LIG4-202ENST00000405925 TERF2IPQ9NYB0 399 aa12.01□□□□□ -0.49
LIG4-202ENST00000405925 CCER2I3L3R5 266 aa12□□□□□ -0.49
LIG4-202ENST00000405925 CFAP70Q5T0N1 1121 aa12□□□□□ -0.49
LIG4-202ENST00000405925 AKNAQ7Z591 1439 aa12□□□□□ -0.49
LIG4-202ENST00000405925 STAC3Q96MF2 364 aa11.99□□□□□ -0.49
LIG4-202ENST00000405925 NGDNQ8NEJ9 315 aaKnown RBP11.99□□□□□ -0.49
LIG4-202ENST00000405925 CEP170Q5SW79 1584 aa11.99□□□□□ -0.49
LIG4-202ENST00000405925 PANK3Q9H999 370 aa11.98□□□□□ -0.49
LIG4-202ENST00000405925 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.98□□□□□ -0.49
LIG4-202ENST00000405925 RALBP1Q15311 655 aa11.97□□□□□ -0.49
LIG4-202ENST00000405925 PLCH2O75038 1416 aa11.97□□□□□ -0.49
LIG4-202ENST00000405925 WDR97A6NE52 1622 aa11.97□□□□□ -0.49
LIG4-202ENST00000405925 NBPF8Q3BBV2 869 aa11.97□□□□□ -0.49
LIG4-202ENST00000405925 LAS1LQ9Y4W2 734 aaKnown RBP11.97□□□□□ -0.49
LIG4-202ENST00000405925 DENND4BO75064 1496 aaPredicted RBP11.97□□□□□ -0.49
LIG4-202ENST00000405925 NBPF1Q3BBV0 1214 aa11.97□□□□□ -0.49
LIG4-202ENST00000405925 CCDC136Q96JN2 1154 aa11.97□□□□□ -0.49
LIG4-202ENST00000405925 SLC52A1Q9NWF4 448 aa11.97□□□□□ -0.49
LIG4-202ENST00000405925 WDR7Q9Y4E6 1490 aa11.97□□□□□ -0.49
LIG4-202ENST00000405925 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.96□□□□□ -0.49
LIG4-202ENST00000405925 EVC2Q86UK5 1308 aa11.96□□□□□ -0.49
LIG4-202ENST00000405925 CENPJQ9HC77 1338 aaPredicted RBP11.96□□□□□ -0.49
LIG4-202ENST00000405925 PTPRKQ15262 1439 aa11.95□□□□□ -0.5
LIG4-202ENST00000405925 TXNDC2Q86VQ3 553 aa11.95□□□□□ -0.5
LIG4-202ENST00000405925 ABCC2Q92887 1545 aa11.94□□□□□ -0.5
LIG4-202ENST00000405925 U2AF1L5P0DN76 240 aaPredicted RBP11.94□□□□□ -0.5
LIG4-202ENST00000405925 U2AF1Q01081 240 aaKnown RBP eCLIP11.94□□□□□ -0.5
LIG4-202ENST00000405925 SUPT16HQ9Y5B9 1047 aaKnown RBP11.94□□□□□ -0.5
LIG4-202ENST00000405925 NLRP13Q86W25 1043 aa11.93□□□□□ -0.5
LIG4-202ENST00000405925 KIF7Q2M1P5 1343 aa11.92□□□□□ -0.5
LIG4-202ENST00000405925 POGZQ7Z3K3 1410 aa11.92□□□□□ -0.5
LIG4-202ENST00000405925 NPM2Q86SE8 214 aaKnown RBP11.91□□□□□ -0.5
LIG4-202ENST00000405925 SAMD9Q5K651 1589 aa11.91□□□□□ -0.5
LIG4-202ENST00000405925 ANKRD30BQ9BXX2 1392 aa11.91□□□□□ -0.5
LIG4-202ENST00000405925 SYCP2Q9BX26 1530 aa11.9□□□□□ -0.5
LIG4-202ENST00000405925 PNNQ9H307 717 aaKnown RBP11.9□□□□□ -0.5
LIG4-202ENST00000405925 PRKRIP1Q9H875 184 aaPredicted RBP11.9□□□□□ -0.5
LIG4-202ENST00000405925 DHX29Q7Z478 1369 aaKnown RBP11.9□□□□□ -0.5
LIG4-202ENST00000405925 TRAPPC8Q9Y2L5 1435 aa11.9□□□□□ -0.5
LIG4-202ENST00000405925 FBXO31Q5XUX0 539 aaPredicted RBP11.9□□□□□ -0.51
LIG4-202ENST00000405925 CCDC7Q96M83 1385 aa11.9□□□□□ -0.51
LIG4-202ENST00000405925 ERBINQ96RT1 1412 aa11.9□□□□□ -0.51
LIG4-202ENST00000405925 THEMISQ8N1K5 641 aaPredicted RBP11.89□□□□□ -0.51
LIG4-202ENST00000405925 SLC26A8Q96RN1 970 aa11.88□□□□□ -0.51
LIG4-202ENST00000405925 CEBPAP49715 358 aaPredicted RBP11.88□□□□□ -0.51
LIG4-202ENST00000405925 WASHC2AQ641Q2 1341 aa11.87□□□□□ -0.51
LIG4-202ENST00000405925 CABP2Q9NPB3 220 aa11.87□□□□□ -0.51
LIG4-202ENST00000405925 MYT1Q01538 1121 aa11.87□□□□□ -0.51
LIG4-202ENST00000405925 CGNL1Q0VF96 1302 aa11.87□□□□□ -0.51
LIG4-202ENST00000405925 CSB-PGBD3P0DP91 1061 aa11.86□□□□□ -0.51
LIG4-202ENST00000405925 IDI1Q13907 227 aa11.86□□□□□ -0.51
LIG4-202ENST00000405925 FRAT1Q92837 279 aaPredicted RBP11.86□□□□□ -0.51
LIG4-202ENST00000405925 CFAP43Q8NDM7 1665 aa11.86□□□□□ -0.51
LIG4-202ENST00000405925 PRAM1Q96QH2 718 aa11.86□□□□□ -0.51
LIG4-202ENST00000405925 AMPHP49418 695 aa11.86□□□□□ -0.51
LIG4-202ENST00000405925 MYBBP1AQ9BQG0 1328 aaKnown RBP11.85□□□□□ -0.51
LIG4-202ENST00000405925 LTV1Q96GA3 475 aaPredicted RBP11.85□□□□□ -0.51
LIG4-202ENST00000405925 CCDC146Q8IYE0 955 aa11.85□□□□□ -0.51
LIG4-202ENST00000405925 ARXQ96QS3 562 aa11.85□□□□□ -0.51
LIG4-202ENST00000405925 ITSN2Q9NZM3 1697 aa11.85□□□□□ -0.51
LIG4-202ENST00000405925 ZNF518AQ6AHZ1 1483 aa11.84□□□□□ -0.51
LIG4-202ENST00000405925 FTSJ3Q8IY81 847 aaKnown RBP11.84□□□□□ -0.51
LIG4-202ENST00000405925 COG3Q96JB2 828 aa11.84□□□□□ -0.51
LIG4-202ENST00000405925 TEX14Q8IWB6 1497 aa11.84□□□□□ -0.51
LIG4-202ENST00000405925 RPGRIP1LQ68CZ1 1315 aa11.84□□□□□ -0.51
LIG4-202ENST00000405925 TCOF1Q13428 1488 aaKnown RBP11.83□□□□□ -0.52
LIG4-202ENST00000405925 KDM5BQ9UGL1 1544 aa11.83□□□□□ -0.52
LIG4-202ENST00000405925 RTF1Q92541 710 aaKnown RBP11.82□□□□□ -0.52
LIG4-202ENST00000405925 A2MP01023 1474 aa11.82□□□□□ -0.52
LIG4-202ENST00000405925 MYH16Q9H6N6 1097 aa11.82□□□□□ -0.52
LIG4-202ENST00000405925 ANKLE2Q86XL3 938 aa11.81□□□□□ -0.52
LIG4-202ENST00000405925 CHD1O14646 1710 aa11.81□□□□□ -0.52
LIG4-202ENST00000405925 MAGI3Q5TCQ9 1506 aa11.81□□□□□ -0.52
LIG4-202ENST00000405925 ABCC10Q5T3U5 1492 aa11.81□□□□□ -0.52
LIG4-202ENST00000405925 GGNBP2Q9H3C7 697 aa11.81□□□□□ -0.52
LIG4-202ENST00000405925 SLC12A5Q9H2X9 1139 aa11.8□□□□□ -0.52
LIG4-202ENST00000405925 ADGRF5Q8IZF2 1346 aa11.8□□□□□ -0.52
LIG4-202ENST00000405925 PSME1Q06323 249 aa11.8□□□□□ -0.52
LIG4-202ENST00000405925 PROSER2Q86WR7 435 aaPredicted RBP11.79□□□□□ -0.52
LIG4-202ENST00000405925 ATF3P18847 181 aa11.79□□□□□ -0.52
LIG4-202ENST00000405925 CNTLNQ9NXG0 1405 aa11.79□□□□□ -0.52
LIG4-202ENST00000405925 DUOX2Q9NRD8 1548 aa11.78□□□□□ -0.52
LIG4-202ENST00000405925 RRP7AQ9Y3A4 280 aaKnown RBP11.78□□□□□ -0.52
LIG4-202ENST00000405925 RPRD2Q5VT52 1461 aaKnown RBP11.78□□□□□ -0.52
LIG4-202ENST00000405925 PPP6R1Q9UPN7 881 aa11.78□□□□□ -0.52
LIG4-202ENST00000405925 AEBP2Q6ZN18 517 aaPredicted RBP11.77□□□□□ -0.52
LIG4-202ENST00000405925 ABCA8O94911 1581 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms