RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 HDGFP51858 240 aaKnown RBP18.55■□□□□ 0.56
SCAF4-202ENST00000399804 RAPGEF3O95398 923 aa18.55■□□□□ 0.56
SCAF4-202ENST00000399804 PBRM1Q86U86 1689 aa18.55■□□□□ 0.56
SCAF4-202ENST00000399804 KIF14Q15058 1648 aa18.55■□□□□ 0.56
SCAF4-202ENST00000399804 NBPF1Q3BBV0 1214 aa18.54■□□□□ 0.56
SCAF4-202ENST00000399804 MORC1Q86VD1 984 aa18.54■□□□□ 0.56
SCAF4-202ENST00000399804 EIF3AQ14152 1382 aaKnown RBP18.54■□□□□ 0.56
SCAF4-202ENST00000399804 NLRP13Q86W25 1043 aa18.52■□□□□ 0.56
SCAF4-202ENST00000399804 CFAP43Q8NDM7 1665 aa18.52■□□□□ 0.56
SCAF4-202ENST00000399804 PLEKHG5O94827 1062 aa18.51■□□□□ 0.55
SCAF4-202ENST00000399804 VGFO15240 615 aaPredicted RBP18.5■□□□□ 0.55
SCAF4-202ENST00000399804 C14orf37Q86TY3 774 aa18.5■□□□□ 0.55
SCAF4-202ENST00000399804 TSHZ2Q9NRE2 1034 aa18.5■□□□□ 0.55
SCAF4-202ENST00000399804 SAMD9Q5K651 1589 aa18.5■□□□□ 0.55
SCAF4-202ENST00000399804 MAPKBP1O60336 1514 aa18.49■□□□□ 0.55
SCAF4-202ENST00000399804 U2SURPO15042 1029 aaKnown RBP18.48■□□□□ 0.55
SCAF4-202ENST00000399804 NUDCQ9Y266 331 aa18.47■□□□□ 0.55
SCAF4-202ENST00000399804 ZBTB47Q9UFB7 747 aaPredicted RBP18.47■□□□□ 0.55
SCAF4-202ENST00000399804 NPM2Q86SE8 214 aaKnown RBP18.46■□□□□ 0.55
SCAF4-202ENST00000399804 STAC3Q96MF2 364 aa18.46■□□□□ 0.55
SCAF4-202ENST00000399804 CFAP70Q5T0N1 1121 aa18.45■□□□□ 0.54
SCAF4-202ENST00000399804 PPP4R2Q9NY27 417 aa18.45■□□□□ 0.54
SCAF4-202ENST00000399804 MYBBP1AQ9BQG0 1328 aaKnown RBP18.44■□□□□ 0.54
SCAF4-202ENST00000399804 CNTLNQ9NXG0 1405 aa18.44■□□□□ 0.54
SCAF4-202ENST00000399804 B4GALNT3Q6L9W6 998 aa18.44■□□□□ 0.54
SCAF4-202ENST00000399804 TCOF1Q13428 1488 aaKnown RBP18.43■□□□□ 0.54
SCAF4-202ENST00000399804 ANP32EQ9BTT0 268 aa18.42■□□□□ 0.54
SCAF4-202ENST00000399804 CD109Q6YHK3 1445 aa18.41■□□□□ 0.54
SCAF4-202ENST00000399804 TMEM132EQ6IEE7 984 aa18.41■□□□□ 0.54
SCAF4-202ENST00000399804 CEP170Q5SW79 1584 aa18.41■□□□□ 0.54
SCAF4-202ENST00000399804 MAPK8IP3Q9UPT6 1336 aa18.41■□□□□ 0.54
SCAF4-202ENST00000399804 C11orf95C9JLR9 678 aaPredicted RBP18.41■□□□□ 0.54
SCAF4-202ENST00000399804 ANP32AP39687 249 aaKnown RBP18.41■□□□□ 0.54
SCAF4-202ENST00000399804 HDGFL2Q7Z4V5 671 aaPredicted RBP18.4■□□□□ 0.54
SCAF4-202ENST00000399804 ZBTB7CA1YPR0 619 aa18.4■□□□□ 0.54
SCAF4-202ENST00000399804 MAGI3Q5TCQ9 1506 aa18.39■□□□□ 0.54
SCAF4-202ENST00000399804 RPRD2Q5VT52 1461 aaKnown RBP18.38■□□□□ 0.53
SCAF4-202ENST00000399804 SOX12O15370 315 aa18.38■□□□□ 0.53
SCAF4-202ENST00000399804 ADGRL1O94910 1474 aa18.37■□□□□ 0.53
SCAF4-202ENST00000399804 PLCH2O75038 1416 aa18.36■□□□□ 0.53
SCAF4-202ENST00000399804 CENPJQ9HC77 1338 aaPredicted RBP18.35■□□□□ 0.53
SCAF4-202ENST00000399804 U2AF1L5P0DN76 240 aaPredicted RBP18.35■□□□□ 0.53
SCAF4-202ENST00000399804 U2AF1Q01081 240 aaKnown RBP eCLIP18.35■□□□□ 0.539e-23■■■■□ 19.4
SCAF4-202ENST00000399804 TERF2IPQ9NYB0 399 aa18.35■□□□□ 0.53
SCAF4-202ENST00000399804 MINK1Q8N4C8 1332 aaPredicted RBP18.35■□□□□ 0.53
SCAF4-202ENST00000399804 FANCAO15360 1455 aa18.34■□□□□ 0.53
SCAF4-202ENST00000399804 LAS1LQ9Y4W2 734 aaKnown RBP18.34■□□□□ 0.53
SCAF4-202ENST00000399804 CCDC146Q8IYE0 955 aa18.34■□□□□ 0.53
SCAF4-202ENST00000399804 RTL5Q5HYW3 569 aaPredicted RBP18.33■□□□□ 0.53
SCAF4-202ENST00000399804 FRAT1Q92837 279 aaPredicted RBP18.33■□□□□ 0.52
SCAF4-202ENST00000399804 RCAN3Q9UKA8 241 aa18.33■□□□□ 0.52
SCAF4-202ENST00000399804 EVC2Q86UK5 1308 aa18.32■□□□□ 0.52
SCAF4-202ENST00000399804 EID1Q9Y6B2 187 aa18.32■□□□□ 0.52
SCAF4-202ENST00000399804 NUTM2FA1L443 756 aa18.32■□□□□ 0.52
SCAF4-202ENST00000399804 CCDC184Q52MB2 194 aa18.31■□□□□ 0.52
SCAF4-202ENST00000399804 LMOD2Q6P5Q4 547 aa18.31■□□□□ 0.52
SCAF4-202ENST00000399804 ZBED9Q6R2W3 1325 aa18.31■□□□□ 0.52
SCAF4-202ENST00000399804 ASXL2Q76L83 1435 aa18.3■□□□□ 0.52
SCAF4-202ENST00000399804 SYCP2Q9BX26 1530 aa18.29■□□□□ 0.52
SCAF4-202ENST00000399804 ITSN2Q9NZM3 1697 aa18.28■□□□□ 0.52
SCAF4-202ENST00000399804 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.28■□□□□ 0.52
SCAF4-202ENST00000399804 TRAPPC8Q9Y2L5 1435 aa18.27■□□□□ 0.52
SCAF4-202ENST00000399804 PNNQ9H307 717 aaKnown RBP18.25■□□□□ 0.51
SCAF4-202ENST00000399804 SLC52A1Q9NWF4 448 aa18.25■□□□□ 0.51
SCAF4-202ENST00000399804 ABCC2Q92887 1545 aa18.25■□□□□ 0.51
SCAF4-202ENST00000399804 GOLGA2Q08379 1002 aa18.25■□□□□ 0.51
SCAF4-202ENST00000399804 PDE3BQ13370 1112 aa18.25■□□□□ 0.51
SCAF4-202ENST00000399804 CGNL1Q0VF96 1302 aa18.24■□□□□ 0.51
SCAF4-202ENST00000399804 ERBINQ96RT1 1412 aa18.24■□□□□ 0.51
SCAF4-202ENST00000399804 DHX29Q7Z478 1369 aaKnown RBP18.23■□□□□ 0.51
SCAF4-202ENST00000399804 FTSJ3Q8IY81 847 aaKnown RBP18.23■□□□□ 0.51
SCAF4-202ENST00000399804 WDR7Q9Y4E6 1490 aa18.23■□□□□ 0.51
SCAF4-202ENST00000399804 ERICH6BQ5W0A0 696 aa18.23■□□□□ 0.51
SCAF4-202ENST00000399804 CABP2Q9NPB3 220 aa18.22■□□□□ 0.51
SCAF4-202ENST00000399804 RBM19Q9Y4C8 960 aaKnown RBP18.22■□□□□ 0.51
SCAF4-202ENST00000399804 DNMT1P26358 1616 aaKnown RBP18.2■□□□□ 0.5
SCAF4-202ENST00000399804 RRP7AQ9Y3A4 280 aaKnown RBP18.2■□□□□ 0.5
SCAF4-202ENST00000399804 APAF1O14727 1248 aa18.19■□□□□ 0.5
SCAF4-202ENST00000399804 SLC12A5Q9H2X9 1139 aa18.19■□□□□ 0.5
SCAF4-202ENST00000399804 PAK3O75914 559 aaPredicted RBP18.18■□□□□ 0.5
SCAF4-202ENST00000399804 BRD4O60885 1362 aaPredicted RBP18.18■□□□□ 0.5
SCAF4-202ENST00000399804 ADGRF5Q8IZF2 1346 aa18.17■□□□□ 0.5
SCAF4-202ENST00000399804 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.17■□□□□ 0.5
SCAF4-202ENST00000399804 PZPP20742 1482 aa18.17■□□□□ 0.5
SCAF4-202ENST00000399804 NGDNQ8NEJ9 315 aaKnown RBP18.17■□□□□ 0.5
SCAF4-202ENST00000399804 PNISRQ8TF01 805 aaKnown RBP18.16■□□□□ 0.5
SCAF4-202ENST00000399804 UPF2Q9HAU5 1272 aaKnown RBP18.16■□□□□ 0.5
SCAF4-202ENST00000399804 DENND4BO75064 1496 aaPredicted RBP18.16■□□□□ 0.5
SCAF4-202ENST00000399804 SHANK2Q9UPX8 1470 aa18.16■□□□□ 0.5
SCAF4-202ENST00000399804 RGS3P49796 1198 aa18.16■□□□□ 0.5
SCAF4-202ENST00000399804 IDI1Q13907 227 aa18.15■□□□□ 0.5
SCAF4-202ENST00000399804 ADAMTS8Q9UP79 889 aa18.15■□□□□ 0.5
SCAF4-202ENST00000399804 PRAM1Q96QH2 718 aa18.15■□□□□ 0.5
SCAF4-202ENST00000399804 RPGRIP1LQ68CZ1 1315 aa18.14■□□□□ 0.49
SCAF4-202ENST00000399804 DUOX2Q9NRD8 1548 aa18.14■□□□□ 0.49
SCAF4-202ENST00000399804 ABCA8O94911 1581 aa18.14■□□□□ 0.49
SCAF4-202ENST00000399804 FBXO31Q5XUX0 539 aaPredicted RBP18.14■□□□□ 0.49
SCAF4-202ENST00000399804 PPP2R1AP30153 589 aa18.13■□□□□ 0.49
SCAF4-202ENST00000399804 GGNBP2Q9H3C7 697 aa18.13■□□□□ 0.49
SCAF4-202ENST00000399804 FAM135AQ9P2D6 1515 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms