RNA–Protein interactions for RNA: ENST00000397443.6

CPNE1-204, Transcript of copine 1, humanhuman

APPRIS P1 TSL 5

Gene CPNE1, Length 1,928 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-204ENST00000397443 FOXD1Q16676 465 aa31.09■■■□□ 2.57
CPNE1-204ENST00000397443 UNC13BO14795 1591 aa31.08■■■□□ 2.57
CPNE1-204ENST00000397443 ATP10AO60312 1499 aa31.05■■■□□ 2.56
CPNE1-204ENST00000397443 EIF2AK4Q9P2K8 1649 aaKnown RBP31.05■■■□□ 2.56
CPNE1-204ENST00000397443 GGT6Q6P531 493 aa31.03■■■□□ 2.56
CPNE1-204ENST00000397443 ARHGEF40Q8TER5 1519 aa31.02■■■□□ 2.56
CPNE1-204ENST00000397443 KDM5DQ9BY66 1539 aa31.02■■■□□ 2.56
CPNE1-204ENST00000397443 FAM135AQ9P2D6 1515 aa31.02■■■□□ 2.56
CPNE1-204ENST00000397443 PKD2Q13563 968 aa31.01■■■□□ 2.55
CPNE1-204ENST00000397443 CLSPNQ9HAW4 1339 aa30.99■■■□□ 2.55
CPNE1-204ENST00000397443 DEPDC5O75140 1603 aa30.98■■■□□ 2.55
CPNE1-204ENST00000397443 SIN3AQ96ST3 1273 aa30.96■■■□□ 2.55
CPNE1-204ENST00000397443 IQGAP3Q86VI3 1631 aa30.96■■■□□ 2.55
CPNE1-204ENST00000397443 KANK1Q14678 1352 aa30.95■■■□□ 2.55
CPNE1-204ENST00000397443 MROH1Q8NDA8 1641 aa30.95■■■□□ 2.55
CPNE1-204ENST00000397443 NEUROD1Q13562 356 aa30.94■■■□□ 2.54
CPNE1-204ENST00000397443 ZEB1P37275 1124 aaPredicted RBP30.94■■■□□ 2.54
CPNE1-204ENST00000397443 RNF17Q9BXT8 1623 aaKnown RBP30.93■■■□□ 2.54
CPNE1-204ENST00000397443 PRDM15P57071 1507 aaPredicted RBP30.92■■■□□ 2.54
CPNE1-204ENST00000397443 SIGLEC1Q9BZZ2 1709 aa30.92■■■□□ 2.54
CPNE1-204ENST00000397443 BCORL1Q5H9F3 1711 aa30.9■■■□□ 2.54
CPNE1-204ENST00000397443 MLECQ14165 292 aa30.89■■■□□ 2.54
CPNE1-204ENST00000397443 REREQ9P2R6 1566 aa30.89■■■□□ 2.54
CPNE1-204ENST00000397443 ARID4BQ4LE39 1312 aaPredicted RBP30.89■■■□□ 2.53
CPNE1-204ENST00000397443 VWDEQ8N2E2 1590 aa30.86■■■□□ 2.53
CPNE1-204ENST00000397443 WASHC2CQ9Y4E1 1318 aa30.85■■■□□ 2.53
CPNE1-204ENST00000397443 CEP152O94986 1710 aa30.84■■■□□ 2.53
CPNE1-204ENST00000397443 ANKRD30BQ9BXX2 1392 aa30.84■■■□□ 2.53
CPNE1-204ENST00000397443 AGLP35573 1532 aa30.83■■■□□ 2.53
CPNE1-204ENST00000397443 TET3O43151 1660 aa30.79■■■□□ 2.52
CPNE1-204ENST00000397443 E9PCH4 1651 aa30.77■■■□□ 2.52
CPNE1-204ENST00000397443 ABCC3O15438 1527 aa30.77■■■□□ 2.52
CPNE1-204ENST00000397443 LMTK2Q8IWU2 1503 aa30.73■■■□□ 2.51
CPNE1-204ENST00000397443 EFCAB6Q5THR3 1501 aa30.72■■■□□ 2.51
CPNE1-204ENST00000397443 CFAP65Q6ZU64 1925 aaKnown RBP30.7■■■□□ 2.51
CPNE1-204ENST00000397443 CAMSAP1Q5T5Y3 1602 aa30.69■■■□□ 2.5
CPNE1-204ENST00000397443 PLA2R1Q13018 1463 aa30.68■■■□□ 2.5
CPNE1-204ENST00000397443 ZC3H13Q5T200 1668 aaKnown RBP30.67■■■□□ 2.5
CPNE1-204ENST00000397443 TONSLQ96HA7 1378 aa30.67■■■□□ 2.5
CPNE1-204ENST00000397443 ESF1Q9H501 851 aaKnown RBP30.66■■■□□ 2.5
CPNE1-204ENST00000397443 NPATQ14207 1427 aa30.66■■■□□ 2.5
CPNE1-204ENST00000397443 RPRD2Q5VT52 1461 aaKnown RBP30.65■■■□□ 2.5
CPNE1-204ENST00000397443 CLTCQ00610 1675 aaKnown RBP30.64■■■□□ 2.5
CPNE1-204ENST00000397443 CCDC144AA2RUR9 1427 aa30.64■■■□□ 2.5
CPNE1-204ENST00000397443 PPP6R1Q9UPN7 881 aa30.63■■■□□ 2.49
CPNE1-204ENST00000397443 SPHKAPQ2M3C7 1700 aa30.62■■■□□ 2.49
CPNE1-204ENST00000397443 PTPRTO14522 1441 aa30.58■■■□□ 2.49
CPNE1-204ENST00000397443 TRPM2O94759 1503 aa30.56■■■□□ 2.48
CPNE1-204ENST00000397443 UGGT1Q9NYU2 1555 aa30.54■■■□□ 2.48
CPNE1-204ENST00000397443 L3MBTL2Q969R5 705 aa30.54■■■□□ 2.48
CPNE1-204ENST00000397443 ARHGAP31Q2M1Z3 1444 aa30.54■■■□□ 2.48
CPNE1-204ENST00000397443 FBXO31Q5XUX0 539 aaPredicted RBP30.53■■■□□ 2.48
CPNE1-204ENST00000397443 TIMELESSQ9UNS1 1208 aa30.53■■■□□ 2.48
CPNE1-204ENST00000397443 CLTCL1P53675 1640 aa30.51■■■□□ 2.47
CPNE1-204ENST00000397443 RGL3Q3MIN7 710 aa30.51■■■□□ 2.47
CPNE1-204ENST00000397443 ZMYM3Q14202 1370 aa30.49■■■□□ 2.47
CPNE1-204ENST00000397443 PLPPR3Q6T4P5 718 aa30.49■■■□□ 2.47
CPNE1-204ENST00000397443 FER1L4A9Z1Z3 1794 aa30.47■■■□□ 2.47
CPNE1-204ENST00000397443 CNTLNQ9NXG0 1405 aa30.47■■■□□ 2.47
CPNE1-204ENST00000397443 PREX1Q8TCU6 1659 aa30.46■■■□□ 2.47
CPNE1-204ENST00000397443 NOS1P29475 1434 aa30.46■■■□□ 2.47
CPNE1-204ENST00000397443 PPP1R15AO75807 674 aaPredicted RBP30.45■■■□□ 2.47
CPNE1-204ENST00000397443 SYNMO15061 1565 aa30.44■■■□□ 2.46
CPNE1-204ENST00000397443 CHGAP10645 457 aaKnown RBP30.43■■■□□ 2.46
CPNE1-204ENST00000397443 ERVK-7P63135 1459 aa30.42■■■□□ 2.46
CPNE1-204ENST00000397443 CEBPAP49715 358 aaPredicted RBP30.42■■■□□ 2.46
CPNE1-204ENST00000397443 KDM2AQ9Y2K7 1162 aa30.41■■■□□ 2.46
CPNE1-204ENST00000397443 DCAF11Q8TEB1 546 aa30.39■■■□□ 2.46
CPNE1-204ENST00000397443 ZNF326Q5BKZ1 582 aaKnown RBP30.38■■■□□ 2.45
CPNE1-204ENST00000397443 MADDQ8WXG6 1647 aa30.38■■■□□ 2.45
CPNE1-204ENST00000397443 MROH2AA6NES4 1674 aa30.37■■■□□ 2.45
CPNE1-204ENST00000397443 SPATA31E1Q6ZUB1 1445 aa30.37■■■□□ 2.45
CPNE1-204ENST00000397443 IDI1Q13907 227 aa30.36■■■□□ 2.45
CPNE1-204ENST00000397443 KIF1BO60333 1816 aa30.36■■■□□ 2.45
CPNE1-204ENST00000397443 SPATA31D1Q6ZQQ2 1576 aa30.34■■■□□ 2.45
CPNE1-204ENST00000397443 RIMS1Q86UR5 1692 aaKnown RBP30.34■■■□□ 2.45
CPNE1-204ENST00000397443 SLC52A1Q9NWF4 448 aa30.32■■■□□ 2.44
CPNE1-204ENST00000397443 C3P01024 1663 aa30.32■■■□□ 2.44
CPNE1-204ENST00000397443 PIK3C2BO00750 1634 aa30.32■■■□□ 2.44
CPNE1-204ENST00000397443 ADAMTSL3P82987 1691 aa30.31■■■□□ 2.44
CPNE1-204ENST00000397443 NBPF8Q3BBV2 869 aa30.29■■■□□ 2.44
CPNE1-204ENST00000397443 TNRQ92752 1358 aa30.27■■■□□ 2.44
CPNE1-204ENST00000397443 ADGRB3O60242 1522 aa30.26■■■□□ 2.44
CPNE1-204ENST00000397443 STAG3Q9UJ98 1225 aa30.26■■■□□ 2.44
CPNE1-204ENST00000397443 MYO5BQ9ULV0 1848 aa30.21■■■□□ 2.43
CPNE1-204ENST00000397443 NEURL4Q96JN8 1562 aa30.19■■■□□ 2.42
CPNE1-204ENST00000397443 NUTM2DQ5VT03 806 aaPredicted RBP30.18■■■□□ 2.42
CPNE1-204ENST00000397443 TMEM131LA2VDJ0 1609 aa30.18■■■□□ 2.42
CPNE1-204ENST00000397443 UHRF1BP1Q6BDS2 1440 aa30.15■■■□□ 2.42
CPNE1-204ENST00000397443 PRAG1Q86YV5 1406 aa30.15■■■□□ 2.42
CPNE1-204ENST00000397443 SENP3Q9H4L4 574 aaPredicted RBP30.12■■■□□ 2.41
CPNE1-204ENST00000397443 ADGRF5Q8IZF2 1346 aa30.11■■■□□ 2.41
CPNE1-204ENST00000397443 IFT172Q9UG01 1749 aa30.11■■■□□ 2.41
CPNE1-204ENST00000397443 A2ML1A8K2U0 1454 aa30.1■■■□□ 2.41
CPNE1-204ENST00000397443 PPLO60437 1756 aa30.1■■■□□ 2.41
CPNE1-204ENST00000397443 PTPRMP28827 1452 aa30.09■■■□□ 2.41
CPNE1-204ENST00000397443 RPGRIP1LQ68CZ1 1315 aa30.09■■■□□ 2.41
CPNE1-204ENST00000397443 NLRP1Q9C000 1473 aa30.08■■■□□ 2.41
CPNE1-204ENST00000397443 NEXMIFQ5QGS0 1516 aa30.07■■■□□ 2.4
CPNE1-204ENST00000397443 HIRIP3Q9BW71 556 aaPredicted RBP30.06■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms