RNA–Protein interactions for RNA: ENST00000397397.6

TSPAN4-203, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN4, Length 1,423 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-203ENST00000397397 RAB3GAP2Q9H2M9 1393 aa35.24■■■■□ 3.23
TSPAN4-203ENST00000397397 RNF17Q9BXT8 1623 aaKnown RBP35.18■■■■□ 3.22
TSPAN4-203ENST00000397397 GGT6Q6P531 493 aa35.17■■■■□ 3.22
TSPAN4-203ENST00000397397 MADDQ8WXG6 1647 aa35.16■■■■□ 3.22
TSPAN4-203ENST00000397397 MLECQ14165 292 aa35.16■■■■□ 3.22
TSPAN4-203ENST00000397397 DEPDC5O75140 1603 aa35.15■■■■□ 3.22
TSPAN4-203ENST00000397397 GRWD1Q9BQ67 446 aaKnown RBP eCLIP35.15■■■■□ 3.22
TSPAN4-203ENST00000397397 UNC13BO14795 1591 aa35.14■■■■□ 3.22
TSPAN4-203ENST00000397397 MROH1Q8NDA8 1641 aa35.12■■■■□ 3.21
TSPAN4-203ENST00000397397 HRCP23327 699 aa35.11■■■■□ 3.21
TSPAN4-203ENST00000397397 TRIM52Q96A61 297 aa35.11■■■■□ 3.21
TSPAN4-203ENST00000397397 PTPRMP28827 1452 aa35.09■■■■□ 3.21
TSPAN4-203ENST00000397397 PRDM15P57071 1507 aaPredicted RBP35.08■■■■□ 3.21
TSPAN4-203ENST00000397397 ACIN1Q9UKV3 1341 aaKnown RBP35.08■■■■□ 3.21
TSPAN4-203ENST00000397397 NUP155O75694 1391 aa35.06■■■■□ 3.2
TSPAN4-203ENST00000397397 KANK1Q14678 1352 aa35.06■■■■□ 3.2
TSPAN4-203ENST00000397397 RIMS1Q86UR5 1692 aaKnown RBP35.05■■■■□ 3.2
TSPAN4-203ENST00000397397 PPP6R1Q9UPN7 881 aa35.01■■■■□ 3.2
TSPAN4-203ENST00000397397 VWDEQ8N2E2 1590 aa35■■■■□ 3.19
TSPAN4-203ENST00000397397 IQGAP3Q86VI3 1631 aa35■■■■□ 3.19
TSPAN4-203ENST00000397397 KDM5DQ9BY66 1539 aa34.99■■■■□ 3.19
TSPAN4-203ENST00000397397 WASHC2CQ9Y4E1 1318 aa34.99■■■■□ 3.19
TSPAN4-203ENST00000397397 CEP152O94986 1710 aa34.98■■■■□ 3.19
TSPAN4-203ENST00000397397 ESF1Q9H501 851 aaKnown RBP34.97■■■■□ 3.19
TSPAN4-203ENST00000397397 FER1L4A9Z1Z3 1794 aa34.96■■■■□ 3.19
TSPAN4-203ENST00000397397 ZC3H13Q5T200 1668 aaKnown RBP34.96■■■■□ 3.19
TSPAN4-203ENST00000397397 ABCC3O15438 1527 aa34.96■■■■□ 3.19
TSPAN4-203ENST00000397397 FAM135AQ9P2D6 1515 aa34.96■■■■□ 3.19
TSPAN4-203ENST00000397397 CLTCQ00610 1675 aaKnown RBP34.95■■■■□ 3.18
TSPAN4-203ENST00000397397 PZPP20742 1482 aa34.94■■■■□ 3.18
TSPAN4-203ENST00000397397 LMTK2Q8IWU2 1503 aa34.91■■■■□ 3.18
TSPAN4-203ENST00000397397 SLC4A1APQ9BWU0 796 aaKnown RBP34.89■■■■□ 3.18
TSPAN4-203ENST00000397397 TET3O43151 1660 aa34.88■■■■□ 3.17
TSPAN4-203ENST00000397397 CNTLNQ9NXG0 1405 aa34.88■■■■□ 3.17
TSPAN4-203ENST00000397397 PLPPR3Q6T4P5 718 aa34.88■■■■□ 3.17
TSPAN4-203ENST00000397397 MPHOSPH9Q99550 1183 aa34.88■■■■□ 3.17
TSPAN4-203ENST00000397397 CAMSAP1Q5T5Y3 1602 aa34.87■■■■□ 3.17
TSPAN4-203ENST00000397397 MROH2AA6NES4 1674 aa34.83■■■■□ 3.17
TSPAN4-203ENST00000397397 EFCAB6Q5THR3 1501 aa34.82■■■■□ 3.16
TSPAN4-203ENST00000397397 PKD2Q13563 968 aa34.8■■■■□ 3.16
TSPAN4-203ENST00000397397 ZMYM3Q14202 1370 aa34.79■■■■□ 3.16
TSPAN4-203ENST00000397397 E9PCH4 1651 aa34.78■■■■□ 3.16
TSPAN4-203ENST00000397397 CEBPAP49715 358 aaPredicted RBP34.76■■■■□ 3.16
TSPAN4-203ENST00000397397 ARHGAP31Q2M1Z3 1444 aa34.75■■■■□ 3.15
TSPAN4-203ENST00000397397 DHX57Q6P158 1386 aaKnown RBP34.75■■■■□ 3.15
TSPAN4-203ENST00000397397 NPATQ14207 1427 aa34.74■■■■□ 3.15
TSPAN4-203ENST00000397397 C3P01024 1663 aa34.73■■■■□ 3.15
TSPAN4-203ENST00000397397 CFAP65Q6ZU64 1925 aaKnown RBP34.73■■■■□ 3.15
TSPAN4-203ENST00000397397 FOXD1Q16676 465 aa34.72■■■■□ 3.15
TSPAN4-203ENST00000397397 RPRD2Q5VT52 1461 aaKnown RBP34.71■■■■□ 3.15
TSPAN4-203ENST00000397397 LMTK3Q96Q04 1460 aa34.66■■■■□ 3.14
TSPAN4-203ENST00000397397 FBXO31Q5XUX0 539 aaPredicted RBP34.65■■■■□ 3.14
TSPAN4-203ENST00000397397 PREX1Q8TCU6 1659 aa34.65■■■■□ 3.14
TSPAN4-203ENST00000397397 SPHKAPQ2M3C7 1700 aa34.62■■■■□ 3.13
TSPAN4-203ENST00000397397 ERVK-7P63135 1459 aa34.62■■■■□ 3.13
TSPAN4-203ENST00000397397 SPATA31D1Q6ZQQ2 1576 aa34.59■■■■□ 3.13
TSPAN4-203ENST00000397397 PTPRTO14522 1441 aa34.58■■■■□ 3.13
TSPAN4-203ENST00000397397 NOS1P29475 1434 aa34.58■■■■□ 3.13
TSPAN4-203ENST00000397397 CCER1Q8TC90 406 aaPredicted RBP34.55■■■■□ 3.12
TSPAN4-203ENST00000397397 PLA2R1Q13018 1463 aa34.55■■■■□ 3.12
TSPAN4-203ENST00000397397 ANKRD30BQ9BXX2 1392 aa34.55■■■■□ 3.12
TSPAN4-203ENST00000397397 SYNMO15061 1565 aa34.54■■■■□ 3.12
TSPAN4-203ENST00000397397 TRPM2O94759 1503 aa34.53■■■■□ 3.12
TSPAN4-203ENST00000397397 TNRQ92752 1358 aa34.52■■■■□ 3.12
TSPAN4-203ENST00000397397 HSPA2P54652 639 aa34.52■■■■□ 3.12
TSPAN4-203ENST00000397397 UGGT1Q9NYU2 1555 aa34.46■■■■□ 3.11
TSPAN4-203ENST00000397397 SETD1BQ9UPS6 1966 aaKnown RBP34.44■■■■□ 3.1
TSPAN4-203ENST00000397397 CLTCL1P53675 1640 aa34.44■■■■□ 3.1
TSPAN4-203ENST00000397397 CCDC144AA2RUR9 1427 aa34.44■■■■□ 3.1
TSPAN4-203ENST00000397397 SLC52A1Q9NWF4 448 aa34.43■■■■□ 3.1
TSPAN4-203ENST00000397397 PIK3C2BO00750 1634 aa34.43■■■■□ 3.1
TSPAN4-203ENST00000397397 UHRF1BP1Q6BDS2 1440 aa34.42■■■■□ 3.1
TSPAN4-203ENST00000397397 IDI1Q13907 227 aa34.4■■■■□ 3.1
TSPAN4-203ENST00000397397 CLSPNQ9HAW4 1339 aa34.4■■■■□ 3.1
TSPAN4-203ENST00000397397 MYO3AQ8NEV4 1616 aa34.39■■■■□ 3.1
TSPAN4-203ENST00000397397 SIN3AQ96ST3 1273 aa34.38■■■■□ 3.09
TSPAN4-203ENST00000397397 NLRP1Q9C000 1473 aa34.37■■■■□ 3.09
TSPAN4-203ENST00000397397 KIF1BO60333 1816 aa34.34■■■■□ 3.09
TSPAN4-203ENST00000397397 NEUROD1Q13562 356 aa34.33■■■■□ 3.09
TSPAN4-203ENST00000397397 CHGAP10645 457 aaKnown RBP34.32■■■■□ 3.08
TSPAN4-203ENST00000397397 STAG3Q9UJ98 1225 aa34.3■■■■□ 3.08
TSPAN4-203ENST00000397397 A2ML1A8K2U0 1454 aa34.29■■■■□ 3.08
TSPAN4-203ENST00000397397 CEP170BQ9Y4F5 1589 aaPredicted RBP34.28■■■■□ 3.08
TSPAN4-203ENST00000397397 ADGRB3O60242 1522 aa34.28■■■■□ 3.08
TSPAN4-203ENST00000397397 ZNF142P52746 1687 aaPredicted RBP34.26■■■■□ 3.08
TSPAN4-203ENST00000397397 TMEM131LA2VDJ0 1609 aa34.26■■■■□ 3.07
TSPAN4-203ENST00000397397 UBR1Q8IWV7 1749 aa34.25■■■■□ 3.07
TSPAN4-203ENST00000397397 MYO5BQ9ULV0 1848 aa34.25■■■■□ 3.07
TSPAN4-203ENST00000397397 KDM5AP29375 1690 aaKnown RBP34.23■■■■□ 3.07
TSPAN4-203ENST00000397397 SPATA31E1Q6ZUB1 1445 aa34.22■■■■□ 3.07
TSPAN4-203ENST00000397397 STRCQ7RTU9 1775 aa34.2■■■■□ 3.07
TSPAN4-203ENST00000397397 RGL3Q3MIN7 710 aa34.2■■■■□ 3.06
TSPAN4-203ENST00000397397 ZNF326Q5BKZ1 582 aaKnown RBP34.19■■■■□ 3.06
TSPAN4-203ENST00000397397 NEURL4Q96JN8 1562 aa34.19■■■■□ 3.06
TSPAN4-203ENST00000397397 THEMISQ8N1K5 641 aaPredicted RBP34.15■■■■□ 3.06
TSPAN4-203ENST00000397397 TONSLQ96HA7 1378 aa34.12■■■■□ 3.05
TSPAN4-203ENST00000397397 RPGRIP1LQ68CZ1 1315 aa34.08■■■■□ 3.05
TSPAN4-203ENST00000397397 TMEM2Q9UHN6 1383 aa34.07■■■■□ 3.05
TSPAN4-203ENST00000397397 RIMS2Q9UQ26 1411 aa34.06■■■■□ 3.04
TSPAN4-203ENST00000397397 L3MBTL2Q969R5 705 aa34.06■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms