RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 PTPRGP23470 1445 aa17.11■□□□□ 0.33
SHMT1-205ENST00000395684 MYBBP1AQ9BQG0 1328 aaKnown RBP17.11■□□□□ 0.33
SHMT1-205ENST00000395684 ABCA8O94911 1581 aa17.11■□□□□ 0.33
SHMT1-205ENST00000395684 BRD4O60885 1362 aaPredicted RBP17.1■□□□□ 0.33
SHMT1-205ENST00000395684 RALBP1Q15311 655 aa17.1■□□□□ 0.33
SHMT1-205ENST00000395684 KTN1Q86UP2 1357 aaKnown RBP17.08■□□□□ 0.32
SHMT1-205ENST00000395684 NOP58Q9Y2X3 529 aaKnown RBP17.07■□□□□ 0.32
SHMT1-205ENST00000395684 PAK3O75914 559 aaPredicted RBP17.07■□□□□ 0.32
SHMT1-205ENST00000395684 E9PCH4 1651 aa17.04■□□□□ 0.32
SHMT1-205ENST00000395684 ARHGEF5Q12774 1597 aa17.03■□□□□ 0.32
SHMT1-205ENST00000395684 NBPF1Q3BBV0 1214 aa17.03■□□□□ 0.32
SHMT1-205ENST00000395684 FAM135AQ9P2D6 1515 aa17.03■□□□□ 0.32
SHMT1-205ENST00000395684 RRP1P56182 461 aaKnown RBP17.03■□□□□ 0.32
SHMT1-205ENST00000395684 SALL2Q9Y467 1007 aaPredicted RBP17.03■□□□□ 0.32
SHMT1-205ENST00000395684 PER1O15534 1290 aaPredicted RBP17.02■□□□□ 0.32
SHMT1-205ENST00000395684 PRAG1Q86YV5 1406 aa17.02■□□□□ 0.32
SHMT1-205ENST00000395684 NLRP13Q86W25 1043 aa17.02■□□□□ 0.31
SHMT1-205ENST00000395684 PARD3Q8TEW0 1356 aa17.02■□□□□ 0.31
SHMT1-205ENST00000395684 RGL3Q3MIN7 710 aa17.01■□□□□ 0.31
SHMT1-205ENST00000395684 EXOC6Q8TAG9 804 aa17■□□□□ 0.31
SHMT1-205ENST00000395684 CCDC141Q6ZP82 1450 aa17■□□□□ 0.31
SHMT1-205ENST00000395684 RCAN3Q9UKA8 241 aa17■□□□□ 0.31
SHMT1-205ENST00000395684 MYT1LQ9UL68 1186 aa17■□□□□ 0.31
SHMT1-205ENST00000395684 CCDC144AA2RUR9 1427 aa16.99■□□□□ 0.31
SHMT1-205ENST00000395684 SAMD9LQ8IVG5 1584 aa16.99■□□□□ 0.31
SHMT1-205ENST00000395684 IPO9Q96P70 1041 aaKnown RBP16.99■□□□□ 0.31
SHMT1-205ENST00000395684 PLA2R1Q13018 1463 aa16.98■□□□□ 0.31
SHMT1-205ENST00000395684 TRPM1Q7Z4N2 1603 aa16.98■□□□□ 0.31
SHMT1-205ENST00000395684 ANP32AP39687 249 aaKnown RBP16.98■□□□□ 0.31
SHMT1-205ENST00000395684 RSPH4AQ5TD94 716 aa16.97■□□□□ 0.31
SHMT1-205ENST00000395684 NBR1Q14596 966 aa16.96■□□□□ 0.31
SHMT1-205ENST00000395684 GPRASP1Q5JY77 1395 aa16.96■□□□□ 0.31
SHMT1-205ENST00000395684 CDC42BPBQ9Y5S2 1711 aa16.96■□□□□ 0.3
SHMT1-205ENST00000395684 DEKP35659 375 aaKnown RBP16.95■□□□□ 0.3
SHMT1-205ENST00000395684 CDCA7LQ96GN5 454 aa16.95■□□□□ 0.3
SHMT1-205ENST00000395684 TESK2Q96S53 571 aa16.95■□□□□ 0.3
SHMT1-205ENST00000395684 PDE3BQ13370 1112 aa16.95■□□□□ 0.3
SHMT1-205ENST00000395684 A2MP01023 1474 aa16.95■□□□□ 0.3
SHMT1-205ENST00000395684 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.94■□□□□ 0.3
SHMT1-205ENST00000395684 DISP3Q9P2K9 1392 aa16.94■□□□□ 0.3
SHMT1-205ENST00000395684 CC2D1BQ5T0F9 858 aaKnown RBP16.93■□□□□ 0.3
SHMT1-205ENST00000395684 PREX2Q70Z35 1606 aa16.93■□□□□ 0.3
SHMT1-205ENST00000395684 COL17A1Q9UMD9 1497 aaPredicted RBP16.92■□□□□ 0.3
SHMT1-205ENST00000395684 PANK3Q9H999 370 aa16.92■□□□□ 0.3
SHMT1-205ENST00000395684 ZBTB47Q9UFB7 747 aaPredicted RBP16.92■□□□□ 0.3
SHMT1-205ENST00000395684 WASHC2CQ9Y4E1 1318 aa16.91■□□□□ 0.3
SHMT1-205ENST00000395684 SYCP2Q9BX26 1530 aa16.91■□□□□ 0.3
SHMT1-205ENST00000395684 PRDM15P57071 1507 aaPredicted RBP16.9■□□□□ 0.3
SHMT1-205ENST00000395684 UNC13BO14795 1591 aa16.89■□□□□ 0.29
SHMT1-205ENST00000395684 TCERG1O14776 1098 aaKnown RBP16.89■□□□□ 0.29
SHMT1-205ENST00000395684 PLEKHH2Q8IVE3 1493 aa16.88■□□□□ 0.29
SHMT1-205ENST00000395684 ERBINQ96RT1 1412 aa16.88■□□□□ 0.29
SHMT1-205ENST00000395684 PLIN1O60240 522 aa16.88■□□□□ 0.29
SHMT1-205ENST00000395684 BLMP54132 1417 aaPredicted RBP16.87■□□□□ 0.29
SHMT1-205ENST00000395684 PDE4AP27815 886 aa16.86■□□□□ 0.29
SHMT1-205ENST00000395684 MAST1Q9Y2H9 1570 aa16.86■□□□□ 0.29
SHMT1-205ENST00000395684 ARHGAP5Q13017 1502 aa16.86■□□□□ 0.29
SHMT1-205ENST00000395684 LAMC1P11047 1609 aa16.86■□□□□ 0.29
SHMT1-205ENST00000395684 TMF1P82094 1093 aa16.85■□□□□ 0.29
SHMT1-205ENST00000395684 TTC37Q6PGP7 1564 aa16.85■□□□□ 0.29
SHMT1-205ENST00000395684 INSRP06213 1382 aa16.85■□□□□ 0.29
SHMT1-205ENST00000395684 NPM2Q86SE8 214 aaKnown RBP16.84■□□□□ 0.29
SHMT1-205ENST00000395684 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.84■□□□□ 0.29
SHMT1-205ENST00000395684 BACH2Q9BYV9 841 aa16.84■□□□□ 0.29
SHMT1-205ENST00000395684 IQGAP3Q86VI3 1631 aa16.84■□□□□ 0.29
SHMT1-205ENST00000395684 ATP10AO60312 1499 aa16.82■□□□□ 0.28
SHMT1-205ENST00000395684 ZMYM4Q5VZL5 1548 aa16.82■□□□□ 0.28
SHMT1-205ENST00000395684 MYO5CQ9NQX4 1742 aa16.82■□□□□ 0.28
SHMT1-205ENST00000395684 MS4A1P11836 297 aa16.82■□□□□ 0.28
SHMT1-205ENST00000395684 CRBNQ96SW2 442 aa16.81■□□□□ 0.28
SHMT1-205ENST00000395684 ADAMTS8Q9UP79 889 aa16.81■□□□□ 0.28
SHMT1-205ENST00000395684 PLXNC1O60486 1568 aa16.8■□□□□ 0.28
SHMT1-205ENST00000395684 EIF2AK4Q9P2K8 1649 aaKnown RBP16.8■□□□□ 0.28
SHMT1-205ENST00000395684 SKAP1Q86WV1 359 aa16.8■□□□□ 0.28
SHMT1-205ENST00000395684 MAGI2Q86UL8 1455 aa16.79■□□□□ 0.28
SHMT1-205ENST00000395684 DUOX2Q9NRD8 1548 aa16.78■□□□□ 0.28
SHMT1-205ENST00000395684 C20orf194Q5TEA3 1177 aa16.78■□□□□ 0.28
SHMT1-205ENST00000395684 WDR7Q9Y4E6 1490 aa16.77■□□□□ 0.28
SHMT1-205ENST00000395684 RTL5Q5HYW3 569 aaPredicted RBP16.76■□□□□ 0.27
SHMT1-205ENST00000395684 PPP2R1AP30153 589 aa16.75■□□□□ 0.27
SHMT1-205ENST00000395684 RNF17Q9BXT8 1623 aaKnown RBP16.75■□□□□ 0.27
SHMT1-205ENST00000395684 AMER1Q5JTC6 1135 aaPredicted RBP16.74■□□□□ 0.27
SHMT1-205ENST00000395684 KNSTRNQ9Y448 316 aa16.74■□□□□ 0.27
SHMT1-205ENST00000395684 PLEKHH1Q9ULM0 1364 aa16.74■□□□□ 0.27
SHMT1-205ENST00000395684 DUSP27Q5VZP5 1158 aa16.73■□□□□ 0.27
SHMT1-205ENST00000395684 ABCC2Q92887 1545 aa16.71■□□□□ 0.27
SHMT1-205ENST00000395684 PLCH2O75038 1416 aa16.71■□□□□ 0.27
SHMT1-205ENST00000395684 ZNF521Q96K83 1311 aa16.71■□□□□ 0.27
SHMT1-205ENST00000395684 ERCC6L2Q5T890 1561 aa16.71■□□□□ 0.27
SHMT1-205ENST00000395684 WDR43Q15061 677 aaKnown RBP eCLIP16.71■□□□□ 0.26
SHMT1-205ENST00000395684 LAS1LQ9Y4W2 734 aaKnown RBP16.71■□□□□ 0.26
SHMT1-205ENST00000395684 KDM2BQ8NHM5 1336 aa16.7■□□□□ 0.26
SHMT1-205ENST00000395684 EFCAB2Q5VUJ9 269 aa16.7■□□□□ 0.26
SHMT1-205ENST00000395684 TRAPPC8Q9Y2L5 1435 aa16.7■□□□□ 0.26
SHMT1-205ENST00000395684 MADDQ8WXG6 1647 aa16.69■□□□□ 0.26
SHMT1-205ENST00000395684 SHROOM2Q13796 1616 aa16.69■□□□□ 0.26
SHMT1-205ENST00000395684 CHD1O14646 1710 aa16.68■□□□□ 0.26
SHMT1-205ENST00000395684 IQGAP1P46940 1657 aa16.67■□□□□ 0.26
SHMT1-205ENST00000395684 GOLGA2Q08379 1002 aa16.67■□□□□ 0.26
SHMT1-205ENST00000395684 SCAF11Q99590 1463 aaKnown RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms