RNA–Protein interactions for RNA: ENST00000393077.2

VTI1A-201, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VTI1A, Length 4,131 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-201ENST00000393077 CENPJQ9HC77 1338 aaPredicted RBP9.64□□□□□ -0.87
VTI1A-201ENST00000393077 GRPEL1Q9HAV7 217 aa9.63□□□□□ -0.87
VTI1A-201ENST00000393077 SETD5Q9C0A6 1442 aa9.63□□□□□ -0.87
VTI1A-201ENST00000393077 FOXD1Q16676 465 aa9.63□□□□□ -0.87
VTI1A-201ENST00000393077 DDX11L8A8MPP1 907 aa9.63□□□□□ -0.87
VTI1A-201ENST00000393077 CHGAP10645 457 aaKnown RBP9.63□□□□□ -0.87
VTI1A-201ENST00000393077 CARMIL2Q6F5E8 1435 aa9.62□□□□□ -0.87
VTI1A-201ENST00000393077 GBP4Q96PP9 640 aa9.62□□□□□ -0.87
VTI1A-201ENST00000393077 CCDC66A2RUB6 948 aa9.62□□□□□ -0.87
VTI1A-201ENST00000393077 TRAK2O60296 914 aa9.62□□□□□ -0.87
VTI1A-201ENST00000393077 PANK2Q9BZ23 570 aa9.62□□□□□ -0.87
VTI1A-201ENST00000393077 PATL2C9JE40 543 aaKnown RBP9.62□□□□□ -0.87
VTI1A-201ENST00000393077 RRP1P56182 461 aaKnown RBP9.61□□□□□ -0.87
VTI1A-201ENST00000393077 CBX1P83916 185 aa9.61□□□□□ -0.87
VTI1A-201ENST00000393077 RGL3Q3MIN7 710 aa9.61□□□□□ -0.87
VTI1A-201ENST00000393077 NCBP3Q53F19 620 aaKnown RBP9.61□□□□□ -0.87
VTI1A-201ENST00000393077 ERICH3Q5RHP9 1530 aa9.61□□□□□ -0.87
VTI1A-201ENST00000393077 AKNAQ7Z591 1439 aa9.61□□□□□ -0.87
VTI1A-201ENST00000393077 STAC3Q96MF2 364 aa9.61□□□□□ -0.87
VTI1A-201ENST00000393077 LETM1O95202 739 aaPredicted RBP9.6□□□□□ -0.87
VTI1A-201ENST00000393077 KIAA2012Q0VF49 1180 aa9.6□□□□□ -0.87
VTI1A-201ENST00000393077 KIF20AO95235 890 aa9.6□□□□□ -0.87
VTI1A-201ENST00000393077 ZSCAN30Q86W11 494 aa9.6□□□□□ -0.87
VTI1A-201ENST00000393077 HSCBQ8IWL3 235 aa9.59□□□□□ -0.87
VTI1A-201ENST00000393077 ISY1Q9ULR0 285 aaKnown RBP9.59□□□□□ -0.87
VTI1A-201ENST00000393077 GTF2E1P29083 439 aaPredicted RBP9.59□□□□□ -0.87
VTI1A-201ENST00000393077 GTPBP4Q9BZE4 634 aaKnown RBP9.58□□□□□ -0.88
VTI1A-201ENST00000393077 ZFP91Q96JP5 570 aaPredicted RBP9.58□□□□□ -0.88
VTI1A-201ENST00000393077 PHLDB1Q86UU1 1377 aa9.58□□□□□ -0.88
VTI1A-201ENST00000393077 SENP3Q9H4L4 574 aaPredicted RBP9.58□□□□□ -0.88
VTI1A-201ENST00000393077 CCDC173Q0VFZ6 552 aa9.58□□□□□ -0.88
VTI1A-201ENST00000393077 PRKRIP1Q9H875 184 aaPredicted RBP9.58□□□□□ -0.88
VTI1A-201ENST00000393077 DNMBPQ6XZF7 1577 aa9.57□□□□□ -0.88
VTI1A-201ENST00000393077 NASPP49321 788 aaPredicted RBP9.57□□□□□ -0.88
VTI1A-201ENST00000393077 HSP90AB1P08238 724 aaKnown RBP9.57□□□□□ -0.88
VTI1A-201ENST00000393077 KCNJ4P48050 445 aa9.57□□□□□ -0.88
VTI1A-201ENST00000393077 MRC2Q9UBG0 1479 aa9.57□□□□□ -0.88
VTI1A-201ENST00000393077 PRDM4Q9UKN5 801 aa9.56□□□□□ -0.88
VTI1A-201ENST00000393077 DYNC1I1O14576 645 aa9.56□□□□□ -0.88
VTI1A-201ENST00000393077 SKOR2Q2VWA4 1001 aaPredicted RBP9.56□□□□□ -0.88
VTI1A-201ENST00000393077 CHMP5Q9NZZ3 219 aa9.56□□□□□ -0.88
VTI1A-201ENST00000393077 GRIN2BQ13224 1484 aa9.55□□□□□ -0.88
VTI1A-201ENST00000393077 HSPA5P11021 654 aaKnown RBP9.55□□□□□ -0.88
VTI1A-201ENST00000393077 MCM4P33991 863 aa9.55□□□□□ -0.88
VTI1A-201ENST00000393077 CENPQQ7L2Z9 268 aaPredicted RBP9.55□□□□□ -0.88
VTI1A-201ENST00000393077 URB2Q14146 1524 aaKnown RBP9.55□□□□□ -0.88
VTI1A-201ENST00000393077 HNRNPMP52272 730 aaKnown RBP eCLIP9.55□□□□□ -0.88
VTI1A-201ENST00000393077 DNAJC2Q99543 621 aaKnown RBP9.55□□□□□ -0.88
VTI1A-201ENST00000393077 CCDC94Q9BW85 323 aaPredicted RBP9.54□□□□□ -0.88
VTI1A-201ENST00000393077 ZNF644Q9H582 1327 aaPredicted RBP9.54□□□□□ -0.88
VTI1A-201ENST00000393077 ABCA10Q8WWZ4 1543 aa9.54□□□□□ -0.88
VTI1A-201ENST00000393077 OFD1O75665 1012 aa9.54□□□□□ -0.88
VTI1A-201ENST00000393077 RSPH4AQ5TD94 716 aa9.54□□□□□ -0.88
VTI1A-201ENST00000393077 UTP14CQ5TAP6 766 aaKnown RBP9.53□□□□□ -0.88
VTI1A-201ENST00000393077 LAMC3Q9Y6N6 1575 aa9.53□□□□□ -0.88
VTI1A-201ENST00000393077 LRRC9Q6ZRR7 1453 aa9.53□□□□□ -0.88
VTI1A-201ENST00000393077 DMTNQ08495 405 aa9.53□□□□□ -0.88
VTI1A-201ENST00000393077 MPHOSPH9Q99550 1183 aa9.53□□□□□ -0.88
VTI1A-201ENST00000393077 PLIN1O60240 522 aa9.53□□□□□ -0.88
VTI1A-201ENST00000393077 PLCB2Q00722 1185 aa9.52□□□□□ -0.88
VTI1A-201ENST00000393077 CRBNQ96SW2 442 aa9.52□□□□□ -0.88
VTI1A-201ENST00000393077 HMGN5P82970 282 aaKnown RBP9.52□□□□□ -0.89
VTI1A-201ENST00000393077 PKD2Q13563 968 aa9.52□□□□□ -0.89
VTI1A-201ENST00000393077 PTPRGP23470 1445 aa9.52□□□□□ -0.89
VTI1A-201ENST00000393077 KTN1Q86UP2 1357 aaKnown RBP9.52□□□□□ -0.89
VTI1A-201ENST00000393077 DDX49Q9Y6V7 483 aaKnown RBP9.52□□□□□ -0.89
VTI1A-201ENST00000393077 XPCQ01831 940 aaPredicted RBP9.51□□□□□ -0.89
VTI1A-201ENST00000393077 CCDC184Q52MB2 194 aa9.51□□□□□ -0.89
VTI1A-201ENST00000393077 SASS6Q6UVJ0 657 aa9.51□□□□□ -0.89
VTI1A-201ENST00000393077 WWC1Q8IX03 1113 aa9.51□□□□□ -0.89
VTI1A-201ENST00000393077 CCDC18Q5T9S5 1454 aa9.51□□□□□ -0.89
VTI1A-201ENST00000393077 SMG6Q86US8 1419 aaKnown RBP9.51□□□□□ -0.89
VTI1A-201ENST00000393077 CC2D1BQ5T0F9 858 aaKnown RBP9.51□□□□□ -0.89
VTI1A-201ENST00000393077 CASKIN1Q8WXD9 1431 aa9.51□□□□□ -0.89
VTI1A-201ENST00000393077 GOLGA6L6A8MZA4 724 aa9.5□□□□□ -0.89
VTI1A-201ENST00000393077 BIVM-ERCC5R4GMW8 1640 aa9.5□□□□□ -0.89
VTI1A-201ENST00000393077 IFT140Q96RY7 1462 aa9.5□□□□□ -0.89
VTI1A-201ENST00000393077 STAG3Q9UJ98 1225 aa9.5□□□□□ -0.89
VTI1A-201ENST00000393077 CLGNO14967 610 aa9.49□□□□□ -0.89
VTI1A-201ENST00000393077 SKAP1Q86WV1 359 aa9.49□□□□□ -0.89
VTI1A-201ENST00000393077 TSPYL1Q9H0U9 437 aa9.49□□□□□ -0.89
VTI1A-201ENST00000393077 IGSF3O75054 1194 aa9.49□□□□□ -0.89
VTI1A-201ENST00000393077 TERF1P54274 439 aa9.49□□□□□ -0.89
VTI1A-201ENST00000393077 HOMEZQ8IX15 550 aa9.49□□□□□ -0.89
VTI1A-201ENST00000393077 ESF1Q9H501 851 aaKnown RBP9.49□□□□□ -0.89
VTI1A-201ENST00000393077 FGD6Q6ZV73 1430 aa9.49□□□□□ -0.89
VTI1A-201ENST00000393077 SNAPC4Q5SXM2 1469 aa9.48□□□□□ -0.89
VTI1A-201ENST00000393077 C14orf37Q86TY3 774 aa9.48□□□□□ -0.89
VTI1A-201ENST00000393077 PDCL2Q8N4E4 241 aa9.48□□□□□ -0.89
VTI1A-201ENST00000393077 TIGD1Q96MW7 591 aa9.48□□□□□ -0.89
VTI1A-201ENST00000393077 CARD11Q9BXL7 1154 aa9.48□□□□□ -0.89
VTI1A-201ENST00000393077 KIF3AQ9Y496 699 aa9.48□□□□□ -0.89
VTI1A-201ENST00000393077 ZNF608Q9ULD9 1512 aaPredicted RBP9.48□□□□□ -0.89
VTI1A-201ENST00000393077 SPDYE4A6NLX3 237 aa9.48□□□□□ -0.89
VTI1A-201ENST00000393077 TEX2Q8IWB9 1127 aa9.48□□□□□ -0.89
VTI1A-201ENST00000393077 SECISBP2LQ93073 1101 aaKnown RBP9.48□□□□□ -0.89
VTI1A-201ENST00000393077 NUP155O75694 1391 aa9.48□□□□□ -0.89
VTI1A-201ENST00000393077 WDR43Q15061 677 aaKnown RBP eCLIP9.47□□□□□ -0.89
VTI1A-201ENST00000393077 EFCAB2Q5VUJ9 269 aa9.47□□□□□ -0.89
VTI1A-201ENST00000393077 CERS3Q8IU89 383 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 116.9 ms