RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ANKRD30AQ9BXX3 1397 aa15.85■□□□□ 0.13
CCDC88C-204ENST00000389857 H3BQV1 296 aa15.84■□□□□ 0.13
CCDC88C-204ENST00000389857 IFFO2Q5TF58 517 aa15.84■□□□□ 0.13
CCDC88C-204ENST00000389857 PHLDB1Q86UU1 1377 aa15.84■□□□□ 0.13
CCDC88C-204ENST00000389857 CENPJQ9HC77 1338 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-204ENST00000389857 DDX11L8A8MPP1 907 aa15.83■□□□□ 0.13
CCDC88C-204ENST00000389857 GTF2E1P29083 439 aaPredicted RBP15.83■□□□□ 0.12
CCDC88C-204ENST00000389857 AMPHP49418 695 aa15.83■□□□□ 0.12
CCDC88C-204ENST00000389857 CCDC70Q6NSX1 233 aa15.83■□□□□ 0.12
CCDC88C-204ENST00000389857 TPM1P09493 284 aa15.83■□□□□ 0.12
CCDC88C-204ENST00000389857 NUP155O75694 1391 aa15.82■□□□□ 0.12
CCDC88C-204ENST00000389857 PES1O00541 588 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-204ENST00000389857 NOL8Q76FK4 1167 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-204ENST00000389857 NGDNQ8NEJ9 315 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-204ENST00000389857 AKAP17AQ02040 695 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-204ENST00000389857 IPO9Q96P70 1041 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-204ENST00000389857 ATP6V1DQ9Y5K8 247 aa15.8■□□□□ 0.12
CCDC88C-204ENST00000389857 LRRFIP1Q32MZ4 808 aaKnown RBP15.8■□□□□ 0.12
CCDC88C-204ENST00000389857 FAM184AQ8NB25 1140 aa15.8■□□□□ 0.12
CCDC88C-204ENST00000389857 GOLGA6L19H0YKK7 550 aa15.79■□□□□ 0.12
CCDC88C-204ENST00000389857 MPHOSPH9Q99550 1183 aa15.79■□□□□ 0.12
CCDC88C-204ENST00000389857 EFCAB2Q5VUJ9 269 aa15.79■□□□□ 0.12
CCDC88C-204ENST00000389857 PDE3BQ13370 1112 aa15.79■□□□□ 0.12
CCDC88C-204ENST00000389857 AMOTL1Q8IY63 956 aa15.79■□□□□ 0.12
CCDC88C-204ENST00000389857 TCEAL9Q9UHQ7 104 aa15.79■□□□□ 0.12
CCDC88C-204ENST00000389857 FMN1Q68DA7 1419 aa15.78■□□□□ 0.12
CCDC88C-204ENST00000389857 FOXD4L1Q9NU39 408 aa15.78■□□□□ 0.12
CCDC88C-204ENST00000389857 GPS2Q13227 327 aa15.78■□□□□ 0.12
CCDC88C-204ENST00000389857 FOXD1Q16676 465 aa15.78■□□□□ 0.12
CCDC88C-204ENST00000389857 SYNE3Q6ZMZ3 975 aa15.77■□□□□ 0.12
CCDC88C-204ENST00000389857 NOL10Q9BSC4 688 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-204ENST00000389857 CCDC146Q8IYE0 955 aa15.76■□□□□ 0.11
CCDC88C-204ENST00000389857 VPS8Q8N3P4 1428 aa15.76■□□□□ 0.11
CCDC88C-204ENST00000389857 TRIM34Q9BYJ4 488 aa15.76■□□□□ 0.11
CCDC88C-204ENST00000389857 SKOR2Q2VWA4 1001 aaPredicted RBP15.75■□□□□ 0.11
CCDC88C-204ENST00000389857 C1orf141Q5JVX7 400 aa15.74■□□□□ 0.11
CCDC88C-204ENST00000389857 CTDP1Q9Y5B0 961 aaPredicted RBP15.74■□□□□ 0.11
CCDC88C-204ENST00000389857 RILPL2Q969X0 211 aa15.73■□□□□ 0.11
CCDC88C-204ENST00000389857 KIF15Q9NS87 1388 aa15.73■□□□□ 0.11
CCDC88C-204ENST00000389857 BECN2A8MW95 431 aa15.73■□□□□ 0.11
CCDC88C-204ENST00000389857 NLRP13Q86W25 1043 aa15.73■□□□□ 0.11
CCDC88C-204ENST00000389857 CCDC47Q96A33 483 aaKnown RBP15.73■□□□□ 0.11
CCDC88C-204ENST00000389857 CLUAP1Q96AJ1 413 aa15.73■□□□□ 0.11
CCDC88C-204ENST00000389857 TRIM29Q14134 588 aa15.72■□□□□ 0.11
CCDC88C-204ENST00000389857 LTV1Q96GA3 475 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-204ENST00000389857 FOXD4L5Q5VV16 416 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-204ENST00000389857 FOXD4L4Q8WXT5 416 aaPredicted RBP15.72■□□□□ 0.11
CCDC88C-204ENST00000389857 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.72■□□□□ 0.11
CCDC88C-204ENST00000389857 UACAQ9BZF9 1416 aa15.72■□□□□ 0.11
CCDC88C-204ENST00000389857 RAB3GAP2Q9H2M9 1393 aa15.72■□□□□ 0.11
CCDC88C-204ENST00000389857 CCAR2Q8N163 923 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-204ENST00000389857 CPLX2Q6PUV4 134 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-204ENST00000389857 ANKRD20A12PQ8NF67 263 aa15.71■□□□□ 0.11
CCDC88C-204ENST00000389857 HOOK1Q9UJC3 728 aaKnown RBP15.71■□□□□ 0.11
CCDC88C-204ENST00000389857 KIF3BO15066 747 aa15.7■□□□□ 0.1
CCDC88C-204ENST00000389857 KRI1Q8N9T8 703 aaKnown RBP15.7■□□□□ 0.1
CCDC88C-204ENST00000389857 RUFY2Q8WXA3 655 aa15.7■□□□□ 0.1
CCDC88C-204ENST00000389857 WASHC2CQ9Y4E1 1318 aa15.7■□□□□ 0.1
CCDC88C-204ENST00000389857 CENPQQ7L2Z9 268 aaPredicted RBP15.7■□□□□ 0.1
CCDC88C-204ENST00000389857 IPO7O95373 1038 aaKnown RBP15.69■□□□□ 0.1
CCDC88C-204ENST00000389857 RSPH4AQ5TD94 716 aa15.69■□□□□ 0.1
CCDC88C-204ENST00000389857 CCDC18Q5T9S5 1454 aa15.69■□□□□ 0.1
CCDC88C-204ENST00000389857 PCMTD1Q96MG8 357 aaPredicted RBP15.69■□□□□ 0.1
CCDC88C-204ENST00000389857 DIAPH3Q9NSV4 1193 aa15.68■□□□□ 0.1
CCDC88C-204ENST00000389857 EVA1CP58658 441 aa15.68■□□□□ 0.1
CCDC88C-204ENST00000389857 MCTP1Q6DN14 999 aa15.68■□□□□ 0.1
CCDC88C-204ENST00000389857 NEXNQ0ZGT2 675 aa15.68■□□□□ 0.1
CCDC88C-204ENST00000389857 ANKRD45Q5TZF3 282 aa15.68■□□□□ 0.1
CCDC88C-204ENST00000389857 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-204ENST00000389857 ANO8Q9HCE9 1232 aaPredicted RBP15.67■□□□□ 0.1
CCDC88C-204ENST00000389857 DDX49Q9Y6V7 483 aaKnown RBP15.67■□□□□ 0.1
CCDC88C-204ENST00000389857 MYBBP1AQ9BQG0 1328 aaKnown RBP15.66■□□□□ 0.1
CCDC88C-204ENST00000389857 COG3Q96JB2 828 aa15.65■□□□□ 0.1
CCDC88C-204ENST00000389857 PDS5BQ9NTI5 1447 aa15.65■□□□□ 0.1
CCDC88C-204ENST00000389857 HSP90AA2PQ14568 343 aaPredicted RBP15.65■□□□□ 0.1
CCDC88C-204ENST00000389857 TTC5Q8N0Z6 440 aa15.65■□□□□ 0.1
CCDC88C-204ENST00000389857 FAM161AQ3B820 660 aa15.65■□□□□ 0.1
CCDC88C-204ENST00000389857 ROCK1Q13464 1354 aa15.64■□□□□ 0.09
CCDC88C-204ENST00000389857 SOGA1O94964 1423 aa15.64■□□□□ 0.09
CCDC88C-204ENST00000389857 ZKSCAN1P17029 563 aaPredicted RBP15.64■□□□□ 0.09
CCDC88C-204ENST00000389857 RSPH6AQ9H0K4 717 aa15.64■□□□□ 0.09
CCDC88C-204ENST00000389857 CGNL1Q0VF96 1302 aa15.64■□□□□ 0.09
CCDC88C-204ENST00000389857 ZKSCAN2Q63HK3 967 aa15.64■□□□□ 0.09
CCDC88C-204ENST00000389857 RAD21O60216 631 aa15.63■□□□□ 0.09
CCDC88C-204ENST00000389857 REC8O95072 547 aa15.63■□□□□ 0.09
CCDC88C-204ENST00000389857 E9PSI1 815 aa15.63■□□□□ 0.09
CCDC88C-204ENST00000389857 TEX35Q5T0J7 233 aa15.63■□□□□ 0.09
CCDC88C-204ENST00000389857 NUTM2DQ5VT03 806 aaPredicted RBP15.63■□□□□ 0.09
CCDC88C-204ENST00000389857 WWC1Q8IX03 1113 aa15.62■□□□□ 0.09
CCDC88C-204ENST00000389857 TEFQ10587 303 aa15.62■□□□□ 0.09
CCDC88C-204ENST00000389857 C9orf78Q9NZ63 289 aaPredicted RBP15.62■□□□□ 0.09
CCDC88C-204ENST00000389857 CNKSR2Q8WXI2 1034 aa15.62■□□□□ 0.09
CCDC88C-204ENST00000389857 VPS37DQ86XT2 251 aa15.62■□□□□ 0.09
CCDC88C-204ENST00000389857 SMARCA2P51531 1590 aa15.62■□□□□ 0.09
CCDC88C-204ENST00000389857 HNRNPMP52272 730 aaKnown RBP eCLIP15.62■□□□□ 0.09
CCDC88C-204ENST00000389857 ANO2Q9NQ90 1003 aa15.61■□□□□ 0.09
CCDC88C-204ENST00000389857 EVC2Q86UK5 1308 aa15.61■□□□□ 0.09
CCDC88C-204ENST00000389857 ERICH2A1L162 156 aa15.61■□□□□ 0.09
CCDC88C-204ENST00000389857 TRDNQ13061 729 aa15.61■□□□□ 0.09
CCDC88C-204ENST00000389857 RNF20Q5VTR2 975 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms