RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 PKD2Q13563 968 aa26.17■■□□□ 1.78
CCDC88C-203ENST00000389856 RICTORQ6R327 1708 aa26.17■■□□□ 1.78
CCDC88C-203ENST00000389856 TSPOAP1O95153 1857 aa26.15■■□□□ 1.78
CCDC88C-203ENST00000389856 DEPDC5O75140 1603 aa26.15■■□□□ 1.78
CCDC88C-203ENST00000389856 PPRC1Q5VV67 1664 aaKnown RBP26.14■■□□□ 1.78
CCDC88C-203ENST00000389856 RPRD2Q5VT52 1461 aaKnown RBP26.13■■□□□ 1.77
CCDC88C-203ENST00000389856 KANK1Q14678 1352 aa26.13■■□□□ 1.77
CCDC88C-203ENST00000389856 A2MP01023 1474 aa26.13■■□□□ 1.77
CCDC88C-203ENST00000389856 FOXD1Q16676 465 aa26.1■■□□□ 1.77
CCDC88C-203ENST00000389856 GRWD1Q9BQ67 446 aaKnown RBP eCLIP26.1■■□□□ 1.77
CCDC88C-203ENST00000389856 ZMYM4Q5VZL5 1548 aa26.09■■□□□ 1.77
CCDC88C-203ENST00000389856 PPP1R15AO75807 674 aaPredicted RBP26.06■■□□□ 1.76
CCDC88C-203ENST00000389856 BCORL1Q5H9F3 1711 aa26.06■■□□□ 1.76
CCDC88C-203ENST00000389856 ABCA6Q8N139 1617 aa26.06■■□□□ 1.76
CCDC88C-203ENST00000389856 PRDM15P57071 1507 aaPredicted RBP26.06■■□□□ 1.76
CCDC88C-203ENST00000389856 RAPGEF3O95398 923 aa26.05■■□□□ 1.76
CCDC88C-203ENST00000389856 RNF17Q9BXT8 1623 aaKnown RBP26.04■■□□□ 1.76
CCDC88C-203ENST00000389856 KIF3BO15066 747 aa26.03■■□□□ 1.76
CCDC88C-203ENST00000389856 FRMPD1Q5SYB0 1578 aa26.03■■□□□ 1.76
CCDC88C-203ENST00000389856 DIP2CQ9Y2E4 1556 aa26.02■■□□□ 1.76
CCDC88C-203ENST00000389856 TET3O43151 1660 aa26.02■■□□□ 1.76
CCDC88C-203ENST00000389856 VWDEQ8N2E2 1590 aa26.01■■□□□ 1.75
CCDC88C-203ENST00000389856 ATP10AO60312 1499 aa25.98■■□□□ 1.75
CCDC88C-203ENST00000389856 CCDC144AA2RUR9 1427 aa25.96■■□□□ 1.75
CCDC88C-203ENST00000389856 MROH1Q8NDA8 1641 aa25.96■■□□□ 1.75
CCDC88C-203ENST00000389856 LMTK2Q8IWU2 1503 aa25.93■■□□□ 1.74
CCDC88C-203ENST00000389856 REREQ9P2R6 1566 aa25.92■■□□□ 1.74
CCDC88C-203ENST00000389856 E9PCH4 1651 aa25.92■■□□□ 1.74
CCDC88C-203ENST00000389856 L3MBTL2Q969R5 705 aa25.92■■□□□ 1.74
CCDC88C-203ENST00000389856 TRHP20396 242 aaPredicted RBP25.9■■□□□ 1.74
CCDC88C-203ENST00000389856 YEATS2Q9ULM3 1422 aa25.88■■□□□ 1.73
CCDC88C-203ENST00000389856 SPHKAPQ2M3C7 1700 aa25.88■■□□□ 1.73
CCDC88C-203ENST00000389856 EFCAB6Q5THR3 1501 aa25.88■■□□□ 1.73
CCDC88C-203ENST00000389856 ZC3H13Q5T200 1668 aaKnown RBP25.87■■□□□ 1.73
CCDC88C-203ENST00000389856 TRPM2O94759 1503 aa25.87■■□□□ 1.73
CCDC88C-203ENST00000389856 CEP152O94986 1710 aa25.84■■□□□ 1.73
CCDC88C-203ENST00000389856 PLA2R1Q13018 1463 aa25.84■■□□□ 1.73
CCDC88C-203ENST00000389856 ARHGEF40Q8TER5 1519 aa25.83■■□□□ 1.73
CCDC88C-203ENST00000389856 PTPRTO14522 1441 aa25.83■■□□□ 1.73
CCDC88C-203ENST00000389856 AGLP35573 1532 aa25.83■■□□□ 1.72
CCDC88C-203ENST00000389856 CENPBP07199 599 aaPredicted RBP25.81■■□□□ 1.72
CCDC88C-203ENST00000389856 GGT6Q6P531 493 aa25.81■■□□□ 1.72
CCDC88C-203ENST00000389856 ABCC3O15438 1527 aa25.8■■□□□ 1.72
CCDC88C-203ENST00000389856 WASHC2CQ9Y4E1 1318 aa25.79■■□□□ 1.72
CCDC88C-203ENST00000389856 PPP6R1Q9UPN7 881 aa25.77■■□□□ 1.72
CCDC88C-203ENST00000389856 CAMSAP1Q5T5Y3 1602 aa25.76■■□□□ 1.71
CCDC88C-203ENST00000389856 COL17A1Q9UMD9 1497 aaPredicted RBP25.75■■□□□ 1.71
CCDC88C-203ENST00000389856 UHRF1BP1Q6BDS2 1440 aa25.75■■□□□ 1.71
CCDC88C-203ENST00000389856 NEURL4Q96JN8 1562 aa25.74■■□□□ 1.71
CCDC88C-203ENST00000389856 STAC3Q96MF2 364 aa25.71■■□□□ 1.71
CCDC88C-203ENST00000389856 ARHGAP31Q2M1Z3 1444 aa25.71■■□□□ 1.71
CCDC88C-203ENST00000389856 CLTCL1P53675 1640 aa25.7■■□□□ 1.71
CCDC88C-203ENST00000389856 CNTLNQ9NXG0 1405 aa25.69■■□□□ 1.7
CCDC88C-203ENST00000389856 KIF1BO60333 1816 aa25.68■■□□□ 1.7
CCDC88C-203ENST00000389856 DCAF11Q8TEB1 546 aa25.68■■□□□ 1.7
CCDC88C-203ENST00000389856 NPATQ14207 1427 aa25.67■■□□□ 1.7
CCDC88C-203ENST00000389856 SPATA31E1Q6ZUB1 1445 aa25.66■■□□□ 1.7
CCDC88C-203ENST00000389856 EIF4G2P78344 907 aaKnown RBP eCLIP25.66■■□□□ 1.71e-8■■■■■ 46.2
CCDC88C-203ENST00000389856 RALGAPBQ86X10 1494 aa25.65■■□□□ 1.7
CCDC88C-203ENST00000389856 NBPF8Q3BBV2 869 aa25.65■■□□□ 1.7
CCDC88C-203ENST00000389856 RGL3Q3MIN7 710 aa25.63■■□□□ 1.69
CCDC88C-203ENST00000389856 ZNF326Q5BKZ1 582 aaKnown RBP25.63■■□□□ 1.69
CCDC88C-203ENST00000389856 MIER1Q8N108 512 aa25.6■■□□□ 1.69
CCDC88C-203ENST00000389856 KDM2AQ9Y2K7 1162 aa25.6■■□□□ 1.69
CCDC88C-203ENST00000389856 PRAG1Q86YV5 1406 aa25.6■■□□□ 1.69
CCDC88C-203ENST00000389856 NOS1P29475 1434 aa25.59■■□□□ 1.69
CCDC88C-203ENST00000389856 ESF1Q9H501 851 aaKnown RBP25.56■■□□□ 1.68
CCDC88C-203ENST00000389856 TRPM1Q7Z4N2 1603 aa25.55■■□□□ 1.68
CCDC88C-203ENST00000389856 CLTCQ00610 1675 aaKnown RBP25.54■■□□□ 1.68
CCDC88C-203ENST00000389856 PREX1Q8TCU6 1659 aa25.54■■□□□ 1.68
CCDC88C-203ENST00000389856 CFAP65Q6ZU64 1925 aaKnown RBP25.54■■□□□ 1.68
CCDC88C-203ENST00000389856 SCAF1Q9H7N4 1312 aaKnown RBP25.54■■□□□ 1.68
CCDC88C-203ENST00000389856 HSPA5P11021 654 aaKnown RBP25.54■■□□□ 1.68
CCDC88C-203ENST00000389856 ADGRB3O60242 1522 aa25.53■■□□□ 1.68
CCDC88C-203ENST00000389856 PIK3C2BO00750 1634 aa25.53■■□□□ 1.68
CCDC88C-203ENST00000389856 SIGLEC1Q9BZZ2 1709 aa25.53■■□□□ 1.68
CCDC88C-203ENST00000389856 SLC52A1Q9NWF4 448 aa25.52■■□□□ 1.68
CCDC88C-203ENST00000389856 UGGT1Q9NYU2 1555 aa25.52■■□□□ 1.68
CCDC88C-203ENST00000389856 LAMC1P11047 1609 aa25.52■■□□□ 1.68
CCDC88C-203ENST00000389856 ARID4BQ4LE39 1312 aaPredicted RBP25.5■■□□□ 1.67
CCDC88C-203ENST00000389856 SYNMO15061 1565 aa25.5■■□□□ 1.67
CCDC88C-203ENST00000389856 MYOM2P54296 1465 aa25.5■■□□□ 1.67
CCDC88C-203ENST00000389856 ROCK2O75116 1388 aaKnown RBP25.5■■□□□ 1.67
CCDC88C-203ENST00000389856 CARD11Q9BXL7 1154 aa25.49■■□□□ 1.67
CCDC88C-203ENST00000389856 MADDQ8WXG6 1647 aa25.49■■□□□ 1.67
CCDC88C-203ENST00000389856 RPGRIP1LQ68CZ1 1315 aa25.48■■□□□ 1.67
CCDC88C-203ENST00000389856 USP47Q96K76 1375 aa25.48■■□□□ 1.67
CCDC88C-203ENST00000389856 IFT172Q9UG01 1749 aa25.48■■□□□ 1.67
CCDC88C-203ENST00000389856 MROH2AA6NES4 1674 aa25.47■■□□□ 1.67
CCDC88C-203ENST00000389856 ERVK-7P63135 1459 aa25.46■■□□□ 1.67
CCDC88C-203ENST00000389856 GPRASP1Q5JY77 1395 aa25.46■■□□□ 1.67
CCDC88C-203ENST00000389856 KIAA1210Q9ULL0 1709 aa25.45■■□□□ 1.67
CCDC88C-203ENST00000389856 MLECQ14165 292 aa25.45■■□□□ 1.67
CCDC88C-203ENST00000389856 HIRIP3Q9BW71 556 aaPredicted RBP25.45■■□□□ 1.66
CCDC88C-203ENST00000389856 CHGAP10645 457 aaKnown RBP25.44■■□□□ 1.66
CCDC88C-203ENST00000389856 POLR1AO95602 1720 aaPredicted RBP25.44■■□□□ 1.66
CCDC88C-203ENST00000389856 SPATA31D1Q6ZQQ2 1576 aa25.42■■□□□ 1.66
CCDC88C-203ENST00000389856 PPLO60437 1756 aa25.41■■□□□ 1.66
CCDC88C-203ENST00000389856 NRXN1Q9ULB1 1477 aa25.36■■□□□ 1.65
CCDC88C-203ENST00000389856 ZMYM3Q14202 1370 aa25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms