RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NISCHQ9Y2I1 1504 aa41.18■■■■■ 4.18
CCDC88C-203ENST00000389856 CCDC180Q9P1Z9 1646 aa36.09■■■■□ 3.37
CCDC88C-203ENST00000389856 ZCCHC6Q5VYS8 1495 aaKnown RBP34.59■■■■□ 3.13
CCDC88C-203ENST00000389856 DCAF1Q9Y4B6 1507 aa34.17■■■■□ 3.06
CCDC88C-203ENST00000389856 ABCC9O60706 1549 aa33.96■■■■□ 3.03
CCDC88C-203ENST00000389856 DCAF8L2P0C7V8 631 aa33.92■■■■□ 3.02
CCDC88C-203ENST00000389856 MYO15BQ96JP2 1530 aa33.82■■■■□ 3
CCDC88C-203ENST00000389856 NACADO15069 1562 aa33.61■■■□□ 2.97
CCDC88C-203ENST00000389856 SHROOM4Q9ULL8 1493 aa33.36■■■□□ 2.93
CCDC88C-203ENST00000389856 RB1CC1Q8TDY2 1594 aa33.33■■■□□ 2.93
CCDC88C-203ENST00000389856 SCRIBQ14160 1630 aa33■■■□□ 2.87
CCDC88C-203ENST00000389856 UNC13AQ9UPW8 1703 aa32.52■■■□□ 2.8
CCDC88C-203ENST00000389856 BICRAQ9NZM4 1560 aa32.15■■■□□ 2.74
CCDC88C-203ENST00000389856 SUPT5HO00267 1087 aaKnown RBP32.11■■■□□ 2.73
CCDC88C-203ENST00000389856 PABPN1Q86U42 306 aaKnown RBP eCLIP31.93■■■□□ 2.7
CCDC88C-203ENST00000389856 BAZ1AQ9NRL2 1556 aaPredicted RBP31.89■■■□□ 2.69
CCDC88C-203ENST00000389856 CECR2Q9BXF3 1484 aa31.86■■■□□ 2.69
CCDC88C-203ENST00000389856 RSF1Q96T23 1441 aaPredicted RBP31.85■■■□□ 2.69
CCDC88C-203ENST00000389856 MROH2BQ7Z745 1585 aa31.73■■■□□ 2.67
CCDC88C-203ENST00000389856 SMARCA4P51532 1647 aa31.69■■■□□ 2.66
CCDC88C-203ENST00000389856 WIZO95785 1651 aa31.48■■■□□ 2.63
CCDC88C-203ENST00000389856 PEG3Q9GZU2 1588 aa31.35■■■□□ 2.61
CCDC88C-203ENST00000389856 TOP2AP11388 1531 aaKnown RBP31.26■■■□□ 2.6
CCDC88C-203ENST00000389856 SMARCA2P51531 1590 aa31.26■■■□□ 2.59
CCDC88C-203ENST00000389856 EIF4G1Q04637 1599 aaKnown RBP31.26■■■□□ 2.59
CCDC88C-203ENST00000389856 ATAD2BQ9ULI0 1458 aa31.15■■■□□ 2.58
CCDC88C-203ENST00000389856 BAZ1BQ9UIG0 1483 aaKnown RBP31.03■■■□□ 2.56
CCDC88C-203ENST00000389856 HMGXB3Q12766 1538 aa30.95■■■□□ 2.55
CCDC88C-203ENST00000389856 NCAPD3P42695 1498 aa30.93■■■□□ 2.54
CCDC88C-203ENST00000389856 CCDC88BA6NC98 1476 aa30.85■■■□□ 2.53
CCDC88C-203ENST00000389856 CC2D2AQ9P2K1 1620 aa30.79■■■□□ 2.52
CCDC88C-203ENST00000389856 CHIC1Q5VXU3 224 aa30.72■■■□□ 2.51
CCDC88C-203ENST00000389856 DNAJC5BQ9UF47 199 aa30.51■■■□□ 2.48
CCDC88C-203ENST00000389856 TRIM41Q8WV44 630 aa30.32■■■□□ 2.44
CCDC88C-203ENST00000389856 CFTRP13569 1480 aa30.22■■■□□ 2.43
CCDC88C-203ENST00000389856 PRDM2Q13029 1718 aa30.19■■■□□ 2.42
CCDC88C-203ENST00000389856 ABCC8Q09428 1581 aa30.13■■■□□ 2.41
CCDC88C-203ENST00000389856 CADPSQ9ULU8 1353 aa30.12■■■□□ 2.41
CCDC88C-203ENST00000389856 WRNQ14191 1432 aaPredicted RBP eCLIP30.06■■■□□ 2.4
CCDC88C-203ENST00000389856 LAMC3Q9Y6N6 1575 aa29.97■■■□□ 2.39
CCDC88C-203ENST00000389856 SYNJ1O43426 1573 aa29.87■■■□□ 2.37
CCDC88C-203ENST00000389856 TOP2BQ02880 1626 aa29.85■■■□□ 2.37
CCDC88C-203ENST00000389856 BIVM-ERCC5R4GMW8 1640 aa29.84■■■□□ 2.37
CCDC88C-203ENST00000389856 FANCD2Q9BXW9 1451 aa29.79■■■□□ 2.36
CCDC88C-203ENST00000389856 NESP48681 1621 aa29.74■■■□□ 2.35
CCDC88C-203ENST00000389856 EEA1Q15075 1411 aa29.73■■■□□ 2.35
CCDC88C-203ENST00000389856 PDS5BQ9NTI5 1447 aa29.73■■■□□ 2.35
CCDC88C-203ENST00000389856 CUX1P39880 1505 aa29.7■■■□□ 2.34
CCDC88C-203ENST00000389856 CEP164Q9UPV0 1460 aa29.66■■■□□ 2.34
CCDC88C-203ENST00000389856 FAM9AQ8IZU1 332 aaPredicted RBP29.61■■■□□ 2.33
CCDC88C-203ENST00000389856 DNMBPQ6XZF7 1577 aa29.57■■■□□ 2.32
CCDC88C-203ENST00000389856 SOGA1O94964 1423 aa29.53■■■□□ 2.32
CCDC88C-203ENST00000389856 KIF21AQ7Z4S6 1674 aa29.5■■■□□ 2.31
CCDC88C-203ENST00000389856 TOPBP1Q92547 1522 aa29.45■■■□□ 2.31
CCDC88C-203ENST00000389856 LOC105371045A0A1W2PR82 267 aa29.44■■■□□ 2.3
CCDC88C-203ENST00000389856 CSRNP3Q8WYN3 585 aa29.42■■■□□ 2.3
CCDC88C-203ENST00000389856 FGD5Q6ZNL6 1462 aa29.42■■■□□ 2.3
CCDC88C-203ENST00000389856 RUSC2Q8N2Y8 1516 aa29.37■■■□□ 2.29
CCDC88C-203ENST00000389856 KIF27Q86VH2 1401 aa29.37■■■□□ 2.29
CCDC88C-203ENST00000389856 URB2Q14146 1524 aaKnown RBP29.36■■■□□ 2.29
CCDC88C-203ENST00000389856 MRC2Q9UBG0 1479 aa29.32■■■□□ 2.28
CCDC88C-203ENST00000389856 POLA1P09884 1462 aaPredicted RBP29.28■■■□□ 2.28
CCDC88C-203ENST00000389856 KIF21BO75037 1637 aa29.28■■■□□ 2.28
CCDC88C-203ENST00000389856 ERCC6Q03468 1493 aa29.25■■■□□ 2.27
CCDC88C-203ENST00000389856 CUX2O14529 1486 aa29.23■■■□□ 2.27
CCDC88C-203ENST00000389856 GOLGA3Q08378 1498 aa29.23■■■□□ 2.27
CCDC88C-203ENST00000389856 ABCA10Q8WWZ4 1543 aa29.2■■■□□ 2.27
CCDC88C-203ENST00000389856 WDR62O43379 1518 aa29.16■■■□□ 2.26
CCDC88C-203ENST00000389856 ERICH3Q5RHP9 1530 aa29.11■■■□□ 2.25
CCDC88C-203ENST00000389856 WDR97A6NE52 1622 aa29.11■■■□□ 2.25
CCDC88C-203ENST00000389856 RAD54L2Q9Y4B4 1467 aa29.11■■■□□ 2.25
CCDC88C-203ENST00000389856 EHMT2Q96KQ7 1210 aa29.1■■■□□ 2.25
CCDC88C-203ENST00000389856 TNIKQ9UKE5 1360 aa29.09■■■□□ 2.25
CCDC88C-203ENST00000389856 PRXQ9BXM0 1461 aa29.07■■■□□ 2.24
CCDC88C-203ENST00000389856 THOC2Q8NI27 1593 aaKnown RBP29.04■■■□□ 2.24
CCDC88C-203ENST00000389856 UBTFP17480 764 aaKnown RBP29.04■■■□□ 2.24
CCDC88C-203ENST00000389856 TARBP1Q13395 1621 aaKnown RBP29.01■■■□□ 2.23
CCDC88C-203ENST00000389856 IGF1RP08069 1367 aa28.99■■■□□ 2.23
CCDC88C-203ENST00000389856 RAPGEF2Q9Y4G8 1499 aa28.98■■■□□ 2.23
CCDC88C-203ENST00000389856 IFT140Q96RY7 1462 aa28.97■■■□□ 2.23
CCDC88C-203ENST00000389856 ABCA5Q8WWZ7 1642 aa28.97■■■□□ 2.23
CCDC88C-203ENST00000389856 CUL7Q14999 1698 aa28.95■■■□□ 2.22
CCDC88C-203ENST00000389856 GAPVD1Q14C86 1478 aa28.91■■■□□ 2.22
CCDC88C-203ENST00000389856 CARMIL1Q5VZK9 1371 aa28.89■■■□□ 2.22
CCDC88C-203ENST00000389856 CEP162Q5TB80 1403 aa28.89■■■□□ 2.22
CCDC88C-203ENST00000389856 TDRD9Q8NDG6 1382 aaKnown RBP28.85■■■□□ 2.21
CCDC88C-203ENST00000389856 PBRM1Q86U86 1689 aa28.78■■■□□ 2.2
CCDC88C-203ENST00000389856 GRIN2BQ13224 1484 aa28.73■■■□□ 2.19
CCDC88C-203ENST00000389856 CLIP1P30622 1438 aa28.72■■■□□ 2.19
CCDC88C-203ENST00000389856 AQRO60306 1485 aaKnown RBP eCLIP28.67■■■□□ 2.18
CCDC88C-203ENST00000389856 EIF4G3O43432 1585 aaKnown RBP28.66■■■□□ 2.18
CCDC88C-203ENST00000389856 ZNF608Q9ULD9 1512 aaPredicted RBP28.64■■■□□ 2.18
CCDC88C-203ENST00000389856 FHAD1B1AJZ9 1412 aa28.63■■■□□ 2.17
CCDC88C-203ENST00000389856 ADAMTS12P58397 1594 aa28.61■■■□□ 2.17
CCDC88C-203ENST00000389856 CTTNBP2Q8WZ74 1663 aa28.58■■■□□ 2.17
CCDC88C-203ENST00000389856 MAGI1Q96QZ7 1491 aaPredicted RBP28.52■■■□□ 2.16
CCDC88C-203ENST00000389856 SNAPC4Q5SXM2 1469 aa28.47■■■□□ 2.15
CCDC88C-203ENST00000389856 VPS8Q8N3P4 1428 aa28.47■■■□□ 2.15
CCDC88C-203ENST00000389856 RANGAP1P46060 587 aaPredicted RBP28.44■■■□□ 2.14
CCDC88C-203ENST00000389856 EFCAB5A4FU69 1503 aa28.42■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms