RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 FAM135AQ9P2D6 1515 aa15.17■□□□□ 0.02
VPS53-202ENST00000389040 BCORL1Q5H9F3 1711 aa15.17■□□□□ 0.02
VPS53-202ENST00000389040 CNTLNQ9NXG0 1405 aa15.17■□□□□ 0.02
VPS53-202ENST00000389040 EIF2AK4Q9P2K8 1649 aaKnown RBP15.16■□□□□ 0.02
VPS53-202ENST00000389040 HFM1A2PYH4 1435 aa15.16■□□□□ 0.02
VPS53-202ENST00000389040 KDM4FA0A1W2PPD8 638 aa15.15■□□□□ 0.02
VPS53-202ENST00000389040 GGT6Q6P531 493 aa15.15■□□□□ 0.02
VPS53-202ENST00000389040 MLECQ14165 292 aa15.13■□□□□ 0.01
VPS53-202ENST00000389040 NAIPQ13075 1403 aa15.12■□□□□ 0.01
VPS53-202ENST00000389040 ADAMTSL3P82987 1691 aa15.12■□□□□ 0.01
VPS53-202ENST00000389040 KANK1Q14678 1352 aa15.11■□□□□ 0.01
VPS53-202ENST00000389040 WASHC2CQ9Y4E1 1318 aa15.11■□□□□ 0.01
VPS53-202ENST00000389040 SIGLEC1Q9BZZ2 1709 aa15.1■□□□□ 0.01
VPS53-202ENST00000389040 RNF17Q9BXT8 1623 aaKnown RBP15.1■□□□□ 0.01
VPS53-202ENST00000389040 KDM5DQ9BY66 1539 aa15.09■□□□□ 0.01
VPS53-202ENST00000389040 PRDM15P57071 1507 aaPredicted RBP15.07■□□□□ 0
VPS53-202ENST00000389040 ZMYM3Q14202 1370 aa15.07■□□□□ 0
VPS53-202ENST00000389040 SETD5Q9C0A6 1442 aa15.06■□□□□ 0
VPS53-202ENST00000389040 PTPRMP28827 1452 aa15.06■□□□□ 0
VPS53-202ENST00000389040 DEPDC5O75140 1603 aa15.06■□□□□ 0
VPS53-202ENST00000389040 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.04■□□□□ -0
VPS53-202ENST00000389040 ARHGAP31Q2M1Z3 1444 aa15.04■□□□□ -0
VPS53-202ENST00000389040 LMTK2Q8IWU2 1503 aa15.04■□□□□ -0
VPS53-202ENST00000389040 MADDQ8WXG6 1647 aa15.04■□□□□ -0
VPS53-202ENST00000389040 VWDEQ8N2E2 1590 aa15.03■□□□□ -0
VPS53-202ENST00000389040 NUP155O75694 1391 aa15.03■□□□□ -0
VPS53-202ENST00000389040 ZC3H13Q5T200 1668 aaKnown RBP15.02■□□□□ -0
VPS53-202ENST00000389040 GCC2Q8IWJ2 1684 aa15.02■□□□□ -0
VPS53-202ENST00000389040 NPATQ14207 1427 aa15.02■□□□□ -0
VPS53-202ENST00000389040 MROH1Q8NDA8 1641 aa15.02□□□□□ -0.01
VPS53-202ENST00000389040 ABCC3O15438 1527 aa15.02□□□□□ -0.01
VPS53-202ENST00000389040 MROH2AA6NES4 1674 aa15.01□□□□□ -0.01
VPS53-202ENST00000389040 UNC13BO14795 1591 aa15.01□□□□□ -0.01
VPS53-202ENST00000389040 FER1L4A9Z1Z3 1794 aa15.01□□□□□ -0.01
VPS53-202ENST00000389040 PZPP20742 1482 aa15□□□□□ -0.01
VPS53-202ENST00000389040 RPRD2Q5VT52 1461 aaKnown RBP14.99□□□□□ -0.01
VPS53-202ENST00000389040 RAB3GAP2Q9H2M9 1393 aa14.97□□□□□ -0.01
VPS53-202ENST00000389040 TRIM52Q96A61 297 aa14.97□□□□□ -0.01
VPS53-202ENST00000389040 RIMS1Q86UR5 1692 aaKnown RBP14.97□□□□□ -0.01
VPS53-202ENST00000389040 CEBPAP49715 358 aaPredicted RBP14.96□□□□□ -0.01
VPS53-202ENST00000389040 CLTCQ00610 1675 aaKnown RBP14.95□□□□□ -0.02
VPS53-202ENST00000389040 IQGAP3Q86VI3 1631 aa14.95□□□□□ -0.02
VPS53-202ENST00000389040 SLC4A1APQ9BWU0 796 aaKnown RBP14.94□□□□□ -0.02
VPS53-202ENST00000389040 EFCAB6Q5THR3 1501 aa14.93□□□□□ -0.02
VPS53-202ENST00000389040 SLC52A1Q9NWF4 448 aa14.93□□□□□ -0.02
VPS53-202ENST00000389040 TET3O43151 1660 aa14.92□□□□□ -0.02
VPS53-202ENST00000389040 C3P01024 1663 aa14.92□□□□□ -0.02
VPS53-202ENST00000389040 TNRQ92752 1358 aa14.92□□□□□ -0.02
VPS53-202ENST00000389040 MPHOSPH9Q99550 1183 aa14.92□□□□□ -0.02
VPS53-202ENST00000389040 CAMSAP1Q5T5Y3 1602 aa14.91□□□□□ -0.02
VPS53-202ENST00000389040 FBXO31Q5XUX0 539 aaPredicted RBP14.91□□□□□ -0.02
VPS53-202ENST00000389040 NOS1P29475 1434 aa14.9□□□□□ -0.02
VPS53-202ENST00000389040 ERVK-7P63135 1459 aa14.9□□□□□ -0.02
VPS53-202ENST00000389040 NLRP1Q9C000 1473 aa14.9□□□□□ -0.02
VPS53-202ENST00000389040 SETD1BQ9UPS6 1966 aaKnown RBP14.9□□□□□ -0.02
VPS53-202ENST00000389040 SPATA31D1Q6ZQQ2 1576 aa14.9□□□□□ -0.02
VPS53-202ENST00000389040 UHRF1BP1Q6BDS2 1440 aa14.89□□□□□ -0.03
VPS53-202ENST00000389040 PKD2Q13563 968 aa14.89□□□□□ -0.03
VPS53-202ENST00000389040 PTPRTO14522 1441 aa14.87□□□□□ -0.03
VPS53-202ENST00000389040 CEP152O94986 1710 aa14.87□□□□□ -0.03
VPS53-202ENST00000389040 THEMISQ8N1K5 641 aaPredicted RBP14.85□□□□□ -0.03
VPS53-202ENST00000389040 A2ML1A8K2U0 1454 aa14.84□□□□□ -0.03
VPS53-202ENST00000389040 DHX57Q6P158 1386 aaKnown RBP14.84□□□□□ -0.03
VPS53-202ENST00000389040 CLSPNQ9HAW4 1339 aa14.84□□□□□ -0.03
VPS53-202ENST00000389040 IDI1Q13907 227 aa14.83□□□□□ -0.04
VPS53-202ENST00000389040 LMTK3Q96Q04 1460 aa14.82□□□□□ -0.04
VPS53-202ENST00000389040 PREX1Q8TCU6 1659 aa14.82□□□□□ -0.04
VPS53-202ENST00000389040 E9PCH4 1651 aa14.82□□□□□ -0.04
VPS53-202ENST00000389040 HDGFP51858 240 aaKnown RBP14.8□□□□□ -0.04
VPS53-202ENST00000389040 STAG3Q9UJ98 1225 aa14.8□□□□□ -0.04
VPS53-202ENST00000389040 ADRA2BP18089 450 aa14.79□□□□□ -0.04
VPS53-202ENST00000389040 CEP170BQ9Y4F5 1589 aaPredicted RBP14.79□□□□□ -0.04
VPS53-202ENST00000389040 TRPM2O94759 1503 aa14.79□□□□□ -0.04
VPS53-202ENST00000389040 MYO3AQ8NEV4 1616 aa14.78□□□□□ -0.04
VPS53-202ENST00000389040 SYNMO15061 1565 aa14.78□□□□□ -0.04
VPS53-202ENST00000389040 UGGT1Q9NYU2 1555 aa14.78□□□□□ -0.04
VPS53-202ENST00000389040 PLA2R1Q13018 1463 aa14.78□□□□□ -0.04
VPS53-202ENST00000389040 KDM5AP29375 1690 aaKnown RBP14.77□□□□□ -0.04
VPS53-202ENST00000389040 ZNF142P52746 1687 aaPredicted RBP14.77□□□□□ -0.05
VPS53-202ENST00000389040 ANKRD30BQ9BXX2 1392 aa14.76□□□□□ -0.05
VPS53-202ENST00000389040 DMRT2Q9Y5R5 561 aa14.76□□□□□ -0.05
VPS53-202ENST00000389040 CCDC144AA2RUR9 1427 aa14.76□□□□□ -0.05
VPS53-202ENST00000389040 PIK3C2BO00750 1634 aa14.75□□□□□ -0.05
VPS53-202ENST00000389040 ANKLE2Q86XL3 938 aa14.75□□□□□ -0.05
VPS53-202ENST00000389040 FOXD1Q16676 465 aa14.74□□□□□ -0.05
VPS53-202ENST00000389040 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.74□□□□□ -0.05
VPS53-202ENST00000389040 EID1Q9Y6B2 187 aa14.74□□□□□ -0.05
VPS53-202ENST00000389040 SPHKAPQ2M3C7 1700 aa14.74□□□□□ -0.05
VPS53-202ENST00000389040 RPGRIP1LQ68CZ1 1315 aa14.74□□□□□ -0.05
VPS53-202ENST00000389040 TMEM2Q9UHN6 1383 aa14.73□□□□□ -0.05
VPS53-202ENST00000389040 ADGRB3O60242 1522 aa14.72□□□□□ -0.05
VPS53-202ENST00000389040 SLIT1O75093 1534 aa14.72□□□□□ -0.05
VPS53-202ENST00000389040 NEURL4Q96JN8 1562 aa14.72□□□□□ -0.05
VPS53-202ENST00000389040 HSPA2P54652 639 aa14.72□□□□□ -0.05
VPS53-202ENST00000389040 STAC3Q96MF2 364 aa14.72□□□□□ -0.05
VPS53-202ENST00000389040 ARHGAP23Q9P227 1491 aa14.71□□□□□ -0.05
VPS53-202ENST00000389040 ZNF316A6NFI3 1004 aaPredicted RBP14.7□□□□□ -0.06
VPS53-202ENST00000389040 CHGAP10645 457 aaKnown RBP14.7□□□□□ -0.06
VPS53-202ENST00000389040 CFAP65Q6ZU64 1925 aaKnown RBP14.69□□□□□ -0.06
VPS53-202ENST00000389040 UBR1Q8IWV7 1749 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms