RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 ROCK1Q13464 1354 aa18.52■□□□□ 0.56
SHROOM1-203ENST00000378679 PPP4R2Q9NY27 417 aa18.52■□□□□ 0.55
SHROOM1-203ENST00000378679 WASHC2AQ641Q2 1341 aa18.51■□□□□ 0.55
SHROOM1-203ENST00000378679 FRAT1Q92837 279 aaPredicted RBP18.51■□□□□ 0.55
SHROOM1-203ENST00000378679 U2AF1L5P0DN76 240 aaPredicted RBP18.51■□□□□ 0.55
SHROOM1-203ENST00000378679 U2AF1Q01081 240 aaKnown RBP eCLIP18.51■□□□□ 0.55
SHROOM1-203ENST00000378679 CCDC7Q96M83 1385 aa18.51■□□□□ 0.55
SHROOM1-203ENST00000378679 B4GALNT3Q6L9W6 998 aa18.5■□□□□ 0.55
SHROOM1-203ENST00000378679 TERF2IPQ9NYB0 399 aa18.5■□□□□ 0.55
SHROOM1-203ENST00000378679 NUTM2FA1L443 756 aa18.5■□□□□ 0.55
SHROOM1-203ENST00000378679 NBPF1Q3BBV0 1214 aa18.49■□□□□ 0.55
SHROOM1-203ENST00000378679 STAC3Q96MF2 364 aa18.49■□□□□ 0.55
SHROOM1-203ENST00000378679 HAP1P54257 671 aaPredicted RBP18.48■□□□□ 0.55
SHROOM1-203ENST00000378679 KIF21AQ7Z4S6 1674 aa18.48■□□□□ 0.55
SHROOM1-203ENST00000378679 CFAP70Q5T0N1 1121 aa18.47■□□□□ 0.55
SHROOM1-203ENST00000378679 CAMSAP2Q08AD1 1489 aa18.46■□□□□ 0.55
SHROOM1-203ENST00000378679 PTPN23Q9H3S7 1636 aa18.46■□□□□ 0.55
SHROOM1-203ENST00000378679 UPF2Q9HAU5 1272 aaKnown RBP18.46■□□□□ 0.55
SHROOM1-203ENST00000378679 THOC2Q8NI27 1593 aaKnown RBP18.46■□□□□ 0.55
SHROOM1-203ENST00000378679 MYBBP1AQ9BQG0 1328 aaKnown RBP18.46■□□□□ 0.55
SHROOM1-203ENST00000378679 ARXQ96QS3 562 aa18.46■□□□□ 0.54
SHROOM1-203ENST00000378679 NCOA1Q15788 1441 aa18.45■□□□□ 0.54
SHROOM1-203ENST00000378679 TMEM132EQ6IEE7 984 aa18.45■□□□□ 0.54
SHROOM1-203ENST00000378679 MINK1Q8N4C8 1332 aaPredicted RBP18.45■□□□□ 0.54
SHROOM1-203ENST00000378679 FTSJ3Q8IY81 847 aaKnown RBP18.45■□□□□ 0.54
SHROOM1-203ENST00000378679 PNNQ9H307 717 aaKnown RBP18.45■□□□□ 0.54
SHROOM1-203ENST00000378679 CCDC141Q6ZP82 1450 aa18.43■□□□□ 0.54
SHROOM1-203ENST00000378679 A0A0G2JS52 829 aa18.43■□□□□ 0.54
SHROOM1-203ENST00000378679 NUP153P49790 1475 aaKnown RBP18.43■□□□□ 0.54
SHROOM1-203ENST00000378679 ATP10BO94823 1461 aa18.42■□□□□ 0.54
SHROOM1-203ENST00000378679 PAK3O75914 559 aaPredicted RBP18.42■□□□□ 0.54
SHROOM1-203ENST00000378679 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.42■□□□□ 0.54
SHROOM1-203ENST00000378679 AKNAQ7Z591 1439 aa18.41■□□□□ 0.54
SHROOM1-203ENST00000378679 EVC2Q86UK5 1308 aa18.41■□□□□ 0.54
SHROOM1-203ENST00000378679 PTPRKQ15262 1439 aa18.41■□□□□ 0.54
SHROOM1-203ENST00000378679 CCDC146Q8IYE0 955 aa18.41■□□□□ 0.54
SHROOM1-203ENST00000378679 CENPJQ9HC77 1338 aaPredicted RBP18.41■□□□□ 0.54
SHROOM1-203ENST00000378679 MYH16Q9H6N6 1097 aa18.41■□□□□ 0.54
SHROOM1-203ENST00000378679 ADAMTS12P58397 1594 aa18.41■□□□□ 0.54
SHROOM1-203ENST00000378679 GPATCH8Q9UKJ3 1502 aaKnown RBP18.4■□□□□ 0.54
SHROOM1-203ENST00000378679 RCAN3Q9UKA8 241 aa18.39■□□□□ 0.54
SHROOM1-203ENST00000378679 ANKRD30BQ9BXX2 1392 aa18.39■□□□□ 0.54
SHROOM1-203ENST00000378679 CD109Q6YHK3 1445 aa18.38■□□□□ 0.53
SHROOM1-203ENST00000378679 UGGT2Q9NYU1 1516 aa18.38■□□□□ 0.53
SHROOM1-203ENST00000378679 WDR97A6NE52 1622 aa18.38■□□□□ 0.53
SHROOM1-203ENST00000378679 DEKP35659 375 aaKnown RBP18.38■□□□□ 0.53
SHROOM1-203ENST00000378679 NGDNQ8NEJ9 315 aaKnown RBP18.38■□□□□ 0.53
SHROOM1-203ENST00000378679 WDR62O43379 1518 aa18.36■□□□□ 0.53
SHROOM1-203ENST00000378679 KIF14Q15058 1648 aa18.36■□□□□ 0.53
SHROOM1-203ENST00000378679 CNTLNQ9NXG0 1405 aa18.34■□□□□ 0.53
SHROOM1-203ENST00000378679 EIF4G3O43432 1585 aaKnown RBP18.34■□□□□ 0.53
SHROOM1-203ENST00000378679 GOLGA2Q08379 1002 aa18.33■□□□□ 0.53
SHROOM1-203ENST00000378679 CGNL1Q0VF96 1302 aa18.33■□□□□ 0.53
SHROOM1-203ENST00000378679 RGS3P49796 1198 aa18.33■□□□□ 0.52
SHROOM1-203ENST00000378679 RAPGEF6Q8TEU7 1601 aa18.32■□□□□ 0.52
SHROOM1-203ENST00000378679 CTTNBP2Q8WZ74 1663 aa18.31■□□□□ 0.52
SHROOM1-203ENST00000378679 HSP90AA1P07900 732 aaKnown RBP18.31■□□□□ 0.52
SHROOM1-203ENST00000378679 PDE3BQ13370 1112 aa18.3■□□□□ 0.52
SHROOM1-203ENST00000378679 SLC52A1Q9NWF4 448 aa18.3■□□□□ 0.52
SHROOM1-203ENST00000378679 ADGRL1O94910 1474 aa18.3■□□□□ 0.52
SHROOM1-203ENST00000378679 NUP160Q12769 1436 aa18.3■□□□□ 0.52
SHROOM1-203ENST00000378679 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.29■□□□□ 0.52
SHROOM1-203ENST00000378679 RRP7AQ9Y3A4 280 aaKnown RBP18.29■□□□□ 0.52
SHROOM1-203ENST00000378679 ABCA5Q8WWZ7 1642 aa18.29■□□□□ 0.52
SHROOM1-203ENST00000378679 KIAA0556O60303 1618 aa18.28■□□□□ 0.52
SHROOM1-203ENST00000378679 MS4A1P11836 297 aa18.27■□□□□ 0.52
SHROOM1-203ENST00000378679 CABP2Q9NPB3 220 aa18.27■□□□□ 0.52
SHROOM1-203ENST00000378679 DISP1Q96F81 1524 aa18.27■□□□□ 0.52
SHROOM1-203ENST00000378679 ZBED9Q6R2W3 1325 aa18.27■□□□□ 0.52
SHROOM1-203ENST00000378679 RTF1Q92541 710 aaKnown RBP18.27■□□□□ 0.51
SHROOM1-203ENST00000378679 APAF1O14727 1248 aa18.26■□□□□ 0.51
SHROOM1-203ENST00000378679 FANCAO15360 1455 aa18.25■□□□□ 0.51
SHROOM1-203ENST00000378679 PRKCSHP14314 528 aaPredicted RBP18.25■□□□□ 0.51
SHROOM1-203ENST00000378679 ERICH6BQ5W0A0 696 aa18.25■□□□□ 0.51
SHROOM1-203ENST00000378679 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.24■□□□□ 0.51
SHROOM1-203ENST00000378679 C11orf95C9JLR9 678 aaPredicted RBP18.24■□□□□ 0.51
SHROOM1-203ENST00000378679 NOP58Q9Y2X3 529 aaKnown RBP18.23■□□□□ 0.51
SHROOM1-203ENST00000378679 AMPHP49418 695 aa18.22■□□□□ 0.51
SHROOM1-203ENST00000378679 COG3Q96JB2 828 aa18.22■□□□□ 0.51
SHROOM1-203ENST00000378679 SLC12A5Q9H2X9 1139 aa18.21■□□□□ 0.51
SHROOM1-203ENST00000378679 GGNBP2Q9H3C7 697 aa18.21■□□□□ 0.51
SHROOM1-203ENST00000378679 PLCH2O75038 1416 aa18.21■□□□□ 0.51
SHROOM1-203ENST00000378679 TXNDC2Q86VQ3 553 aa18.2■□□□□ 0.5
SHROOM1-203ENST00000378679 LTV1Q96GA3 475 aaPredicted RBP18.2■□□□□ 0.5
SHROOM1-203ENST00000378679 ERBINQ96RT1 1412 aa18.2■□□□□ 0.5
SHROOM1-203ENST00000378679 TARBP1Q13395 1621 aaKnown RBP18.2■□□□□ 0.5
SHROOM1-203ENST00000378679 PRAM1Q96QH2 718 aa18.2■□□□□ 0.5
SHROOM1-203ENST00000378679 CALD1Q05682 793 aaKnown RBP18.2■□□□□ 0.5
SHROOM1-203ENST00000378679 RPRD2Q5VT52 1461 aaKnown RBP18.19■□□□□ 0.5
SHROOM1-203ENST00000378679 ASXL2Q76L83 1435 aa18.18■□□□□ 0.5
SHROOM1-203ENST00000378679 CLUAP1Q96AJ1 413 aa18.18■□□□□ 0.5
SHROOM1-203ENST00000378679 CCDC184Q52MB2 194 aa18.18■□□□□ 0.5
SHROOM1-203ENST00000378679 CHMP4BQ9H444 224 aaKnown RBP18.18■□□□□ 0.5
SHROOM1-203ENST00000378679 IPO8O15397 1037 aaKnown RBP18.17■□□□□ 0.5
SHROOM1-203ENST00000378679 CSB-PGBD3P0DP91 1061 aa18.15■□□□□ 0.5
SHROOM1-203ENST00000378679 DHX29Q7Z478 1369 aaKnown RBP18.15■□□□□ 0.5
SHROOM1-203ENST00000378679 SMC4Q9NTJ3 1288 aa18.15■□□□□ 0.5
SHROOM1-203ENST00000378679 ADAMTS8Q9UP79 889 aa18.15■□□□□ 0.5
SHROOM1-203ENST00000378679 MAPKBP1O60336 1514 aa18.15■□□□□ 0.5
SHROOM1-203ENST00000378679 RPGRIP1LQ68CZ1 1315 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms