RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CLTCQ00610 1675 aaKnown RBP20.39■□□□□ 0.86
VPS28-202ENST00000377348 EIF2AK4Q9P2K8 1649 aaKnown RBP20.39■□□□□ 0.86
VPS28-202ENST00000377348 ERBINQ96RT1 1412 aa20.39■□□□□ 0.85
VPS28-202ENST00000377348 C3P01024 1663 aa20.38■□□□□ 0.85
VPS28-202ENST00000377348 ZMYM3Q14202 1370 aa20.37■□□□□ 0.85
VPS28-202ENST00000377348 PPP6R1Q9UPN7 881 aa20.37■□□□□ 0.85
VPS28-202ENST00000377348 RNF17Q9BXT8 1623 aaKnown RBP20.37■□□□□ 0.85
VPS28-202ENST00000377348 MROH1Q8NDA8 1641 aa20.35■□□□□ 0.85
VPS28-202ENST00000377348 WASHC2CQ9Y4E1 1318 aa20.35■□□□□ 0.85
VPS28-202ENST00000377348 ROCK1Q13464 1354 aa20.34■□□□□ 0.85
VPS28-202ENST00000377348 KDM5DQ9BY66 1539 aa20.34■□□□□ 0.85
VPS28-202ENST00000377348 MROH2AA6NES4 1674 aa20.34■□□□□ 0.85
VPS28-202ENST00000377348 ANKRD50Q9ULJ7 1429 aa20.33■□□□□ 0.84
VPS28-202ENST00000377348 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.32■□□□□ 0.849e-9■■■□□ 15.1
VPS28-202ENST00000377348 ABCC3O15438 1527 aa20.3■□□□□ 0.84
VPS28-202ENST00000377348 PRDM15P57071 1507 aaPredicted RBP20.29■□□□□ 0.84
VPS28-202ENST00000377348 FAM135AQ9P2D6 1515 aa20.29■□□□□ 0.84
VPS28-202ENST00000377348 LMTK3Q96Q04 1460 aa20.29■□□□□ 0.84
VPS28-202ENST00000377348 DEPDC5O75140 1603 aa20.28■□□□□ 0.84
VPS28-202ENST00000377348 CEP152O94986 1710 aa20.27■□□□□ 0.83
VPS28-202ENST00000377348 FBXO31Q5XUX0 539 aaPredicted RBP20.26■□□□□ 0.83
VPS28-202ENST00000377348 NPATQ14207 1427 aa20.25■□□□□ 0.83
VPS28-202ENST00000377348 ZC3H13Q5T200 1668 aaKnown RBP20.25■□□□□ 0.83
VPS28-202ENST00000377348 PREX1Q8TCU6 1659 aa20.24■□□□□ 0.83
VPS28-202ENST00000377348 HSPA2P54652 639 aa20.24■□□□□ 0.83
VPS28-202ENST00000377348 PZPP20742 1482 aa20.24■□□□□ 0.83
VPS28-202ENST00000377348 KANK1Q14678 1352 aa20.23■□□□□ 0.83
VPS28-202ENST00000377348 UHRF1BP1Q6BDS2 1440 aa20.23■□□□□ 0.83
VPS28-202ENST00000377348 VWDEQ8N2E2 1590 aa20.21■□□□□ 0.83
VPS28-202ENST00000377348 CAMSAP1Q5T5Y3 1602 aa20.21■□□□□ 0.83
VPS28-202ENST00000377348 SETD1BQ9UPS6 1966 aaKnown RBP20.21■□□□□ 0.83
VPS28-202ENST00000377348 NAIPQ13075 1403 aa20.2■□□□□ 0.82
VPS28-202ENST00000377348 UNC13BO14795 1591 aa20.19■□□□□ 0.82
VPS28-202ENST00000377348 LMTK2Q8IWU2 1503 aa20.17■□□□□ 0.82
VPS28-202ENST00000377348 TNRQ92752 1358 aa20.17■□□□□ 0.82
VPS28-202ENST00000377348 HFM1A2PYH4 1435 aa20.17■□□□□ 0.82
VPS28-202ENST00000377348 MYO3AQ8NEV4 1616 aa20.16■□□□□ 0.82
VPS28-202ENST00000377348 GCC2Q8IWJ2 1684 aa20.16■□□□□ 0.82
VPS28-202ENST00000377348 ARHGAP31Q2M1Z3 1444 aa20.15■□□□□ 0.82
VPS28-202ENST00000377348 ERVK-7P63135 1459 aa20.15■□□□□ 0.82
VPS28-202ENST00000377348 NUP155O75694 1391 aa20.14■□□□□ 0.81
VPS28-202ENST00000377348 SPATA31D1Q6ZQQ2 1576 aa20.13■□□□□ 0.81
VPS28-202ENST00000377348 EFCAB6Q5THR3 1501 aa20.12■□□□□ 0.81
VPS28-202ENST00000377348 CFAP65Q6ZU64 1925 aaKnown RBP20.12■□□□□ 0.81
VPS28-202ENST00000377348 CEP170BQ9Y4F5 1589 aaPredicted RBP20.12■□□□□ 0.81
VPS28-202ENST00000377348 ZNF142P52746 1687 aaPredicted RBP20.1■□□□□ 0.81
VPS28-202ENST00000377348 IQGAP3Q86VI3 1631 aa20.09■□□□□ 0.81
VPS28-202ENST00000377348 A2ML1A8K2U0 1454 aa20.09■□□□□ 0.81
VPS28-202ENST00000377348 TET3O43151 1660 aa20.09■□□□□ 0.81
VPS28-202ENST00000377348 NLRP1Q9C000 1473 aa20.06■□□□□ 0.8
VPS28-202ENST00000377348 TRIM52Q96A61 297 aa20.05■□□□□ 0.8
VPS28-202ENST00000377348 NOS1P29475 1434 aa20.04■□□□□ 0.8
VPS28-202ENST00000377348 SYNMO15061 1565 aa20.04■□□□□ 0.8
VPS28-202ENST00000377348 E9PCH4 1651 aa20.03■□□□□ 0.8
VPS28-202ENST00000377348 RPRD2Q5VT52 1461 aaKnown RBP20.03■□□□□ 0.8
VPS28-202ENST00000377348 UGGT1Q9NYU2 1555 aa20.02■□□□□ 0.8
VPS28-202ENST00000377348 SETD5Q9C0A6 1442 aa20.02■□□□□ 0.79
VPS28-202ENST00000377348 STRCQ7RTU9 1775 aa20.01■□□□□ 0.79
VPS28-202ENST00000377348 NCKAP5LQ9HCH0 1330 aa20■□□□□ 0.79
VPS28-202ENST00000377348 IDI1Q13907 227 aa19.99■□□□□ 0.79
VPS28-202ENST00000377348 PLA2R1Q13018 1463 aa19.98■□□□□ 0.79
VPS28-202ENST00000377348 PIK3C2BO00750 1634 aa19.98■□□□□ 0.79
VPS28-202ENST00000377348 THEMISQ8N1K5 641 aaPredicted RBP19.97■□□□□ 0.79
VPS28-202ENST00000377348 RAB3GAP2Q9H2M9 1393 aa19.96■□□□□ 0.79
VPS28-202ENST00000377348 SLC4A1APQ9BWU0 796 aaKnown RBP19.96■□□□□ 0.79
VPS28-202ENST00000377348 UBR1Q8IWV7 1749 aa19.96■□□□□ 0.79
VPS28-202ENST00000377348 PKD2Q13563 968 aa19.95■□□□□ 0.78
VPS28-202ENST00000377348 SLC52A1Q9NWF4 448 aa19.94■□□□□ 0.78
VPS28-202ENST00000377348 STAG3Q9UJ98 1225 aa19.94■□□□□ 0.78
VPS28-202ENST00000377348 DMRT2Q9Y5R5 561 aa19.91■□□□□ 0.78
VPS28-202ENST00000377348 FOXD1Q16676 465 aa19.9■□□□□ 0.78
VPS28-202ENST00000377348 ANKLE2Q86XL3 938 aa19.9■□□□□ 0.78
VPS28-202ENST00000377348 PTPRTO14522 1441 aa19.9■□□□□ 0.78
VPS28-202ENST00000377348 ADGRB3O60242 1522 aa19.9■□□□□ 0.78
VPS28-202ENST00000377348 SPHKAPQ2M3C7 1700 aa19.89■□□□□ 0.77
VPS28-202ENST00000377348 MPHOSPH9Q99550 1183 aa19.89■□□□□ 0.77
VPS28-202ENST00000377348 NEURL4Q96JN8 1562 aa19.88■□□□□ 0.77
VPS28-202ENST00000377348 CHGAP10645 457 aaKnown RBP19.88■□□□□ 0.77
VPS28-202ENST00000377348 TMEM2Q9UHN6 1383 aa19.87■□□□□ 0.77
VPS28-202ENST00000377348 LTKP29376 864 aa19.87■□□□□ 0.77
VPS28-202ENST00000377348 POLR1AO95602 1720 aaPredicted RBP19.87■□□□□ 0.77
VPS28-202ENST00000377348 SLIT1O75093 1534 aa19.86■□□□□ 0.77
VPS28-202ENST00000377348 ARHGAP23Q9P227 1491 aa19.86■□□□□ 0.77
VPS28-202ENST00000377348 KDM5AP29375 1690 aaKnown RBP19.85■□□□□ 0.77
VPS28-202ENST00000377348 TXNDC2Q86VQ3 553 aa19.85■□□□□ 0.77
VPS28-202ENST00000377348 TRPM2O94759 1503 aa19.85■□□□□ 0.77
VPS28-202ENST00000377348 TMEM131LA2VDJ0 1609 aa19.84■□□□□ 0.77
VPS28-202ENST00000377348 SCAF11Q99590 1463 aaKnown RBP19.83■□□□□ 0.76
VPS28-202ENST00000377348 NPHP4O75161 1426 aaPredicted RBP19.83■□□□□ 0.76
VPS28-202ENST00000377348 CLTCL1P53675 1640 aa19.83■□□□□ 0.76
VPS28-202ENST00000377348 MYO5BQ9ULV0 1848 aa19.83■□□□□ 0.76
VPS28-202ENST00000377348 ACIN1Q9UKV3 1341 aaKnown RBP19.82■□□□□ 0.76
VPS28-202ENST00000377348 MED14O60244 1454 aa19.82■□□□□ 0.76
VPS28-202ENST00000377348 HRCP23327 699 aa19.81■□□□□ 0.76
VPS28-202ENST00000377348 EID1Q9Y6B2 187 aa19.81■□□□□ 0.76
VPS28-202ENST00000377348 RIMS2Q9UQ26 1411 aa19.79■□□□□ 0.76
VPS28-202ENST00000377348 TRIM26Q12899 539 aaPredicted RBP19.79■□□□□ 0.76
VPS28-202ENST00000377348 SENP3Q9H4L4 574 aaPredicted RBP19.79■□□□□ 0.76
VPS28-202ENST00000377348 ZNF335Q9H4Z2 1342 aaPredicted RBP19.78■□□□□ 0.76
VPS28-202ENST00000377348 ZFYVE9O95405 1425 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms