RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 DCAF11Q8TEB1 546 aa34.38■■■■□ 3.09
C9orf40-201ENST00000376854 SMG6Q86US8 1419 aaKnown RBP34.38■■■■□ 3.09
C9orf40-201ENST00000376854 ST20-MTHFSA0A0A6YYL1 179 aa34.35■■■■□ 3.09
C9orf40-201ENST00000376854 RSPH4AQ5TD94 716 aa34.35■■■■□ 3.09
C9orf40-201ENST00000376854 FAM135AQ9P2D6 1515 aa34.34■■■■□ 3.09
C9orf40-201ENST00000376854 B4GALNT3Q6L9W6 998 aa34.33■■■■□ 3.09
C9orf40-201ENST00000376854 FANCIQ9NVI1 1328 aa34.31■■■■□ 3.08
C9orf40-201ENST00000376854 PNISRQ8TF01 805 aaKnown RBP34.3■■■■□ 3.08
C9orf40-201ENST00000376854 NUDCQ9Y266 331 aa34.3■■■■□ 3.08
C9orf40-201ENST00000376854 TMC1Q8TDI8 760 aa34.29■■■■□ 3.08
C9orf40-201ENST00000376854 MYO5CQ9NQX4 1742 aa34.28■■■■□ 3.08
C9orf40-201ENST00000376854 MAST1Q9Y2H9 1570 aa34.27■■■■□ 3.08
C9orf40-201ENST00000376854 MSH5O43196 834 aa34.25■■■■□ 3.07
C9orf40-201ENST00000376854 CLASP1Q7Z460 1538 aa34.24■■■■□ 3.07
C9orf40-201ENST00000376854 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.24■■■■□ 3.07
C9orf40-201ENST00000376854 CCDC144AA2RUR9 1427 aa34.22■■■■□ 3.07
C9orf40-201ENST00000376854 ZCCHC11Q5TAX3 1644 aaKnown RBP34.22■■■■□ 3.07
C9orf40-201ENST00000376854 KTN1Q86UP2 1357 aaKnown RBP34.2■■■■□ 3.06
C9orf40-201ENST00000376854 PLEKHH2Q8IVE3 1493 aa34.19■■■■□ 3.06
C9orf40-201ENST00000376854 UNC13BO14795 1591 aa34.19■■■■□ 3.06
C9orf40-201ENST00000376854 RALBP1Q15311 655 aa34.18■■■■□ 3.06
C9orf40-201ENST00000376854 PRAG1Q86YV5 1406 aa34.18■■■■□ 3.06
C9orf40-201ENST00000376854 MYBBP1AQ9BQG0 1328 aaKnown RBP34.18■■■■□ 3.06
C9orf40-201ENST00000376854 RNF123Q5XPI4 1314 aa34.17■■■■□ 3.06
C9orf40-201ENST00000376854 BRD4O60885 1362 aaPredicted RBP34.17■■■■□ 3.06
C9orf40-201ENST00000376854 PLXNC1O60486 1568 aa34.16■■■■□ 3.06
C9orf40-201ENST00000376854 PLA2R1Q13018 1463 aa34.15■■■■□ 3.06
C9orf40-201ENST00000376854 PLCH2O75038 1416 aa34.15■■■■□ 3.06
C9orf40-201ENST00000376854 LRPPRCP42704 1394 aaKnown RBP34.14■■■■□ 3.06
C9orf40-201ENST00000376854 E9PCH4 1651 aa34.13■■■■□ 3.05
C9orf40-201ENST00000376854 SENP3-EIF4A1A0A087X0R7 540 aa34.13■■■■□ 3.05
C9orf40-201ENST00000376854 TRPM1Q7Z4N2 1603 aa34.12■■■■□ 3.05
C9orf40-201ENST00000376854 RGL3Q3MIN7 710 aa34.12■■■■□ 3.05
C9orf40-201ENST00000376854 UHRF1BP1LA0JNW5 1464 aa34.11■■■■□ 3.05
C9orf40-201ENST00000376854 EFCAB2Q5VUJ9 269 aa34.08■■■■□ 3.05
C9orf40-201ENST00000376854 DUOX2Q9NRD8 1548 aa34.07■■■■□ 3.04
C9orf40-201ENST00000376854 NBPF1Q3BBV0 1214 aa34.07■■■■□ 3.04
C9orf40-201ENST00000376854 IQGAP3Q86VI3 1631 aa34.06■■■■□ 3.04
C9orf40-201ENST00000376854 TRAPPC8Q9Y2L5 1435 aa34.05■■■■□ 3.04
C9orf40-201ENST00000376854 A2MP01023 1474 aa34.05■■■■□ 3.04
C9orf40-201ENST00000376854 GPRASP1Q5JY77 1395 aa34.04■■■■□ 3.04
C9orf40-201ENST00000376854 ABCC1P33527 1531 aa34.03■■■■□ 3.04
C9orf40-201ENST00000376854 ERBINQ96RT1 1412 aa34■■■■□ 3.03
C9orf40-201ENST00000376854 NLRP13Q86W25 1043 aa33.99■■■■□ 3.03
C9orf40-201ENST00000376854 CCDC136Q96JN2 1154 aa33.99■■■■□ 3.03
C9orf40-201ENST00000376854 PARD3Q8TEW0 1356 aa33.99■■■■□ 3.03
C9orf40-201ENST00000376854 MAGI2Q86UL8 1455 aa33.98■■■■□ 3.03
C9orf40-201ENST00000376854 ERICH6Q7L0X2 663 aa33.97■■■■□ 3.03
C9orf40-201ENST00000376854 COL17A1Q9UMD9 1497 aaPredicted RBP33.95■■■■□ 3.02
C9orf40-201ENST00000376854 PER1O15534 1290 aaPredicted RBP33.95■■■■□ 3.02
C9orf40-201ENST00000376854 LAMC1P11047 1609 aa33.94■■■■□ 3.02
C9orf40-201ENST00000376854 PRDM15P57071 1507 aaPredicted RBP33.94■■■■□ 3.02
C9orf40-201ENST00000376854 AFAP1Q8N556 730 aa33.92■■■■□ 3.02
C9orf40-201ENST00000376854 TESK2Q96S53 571 aa33.92■■■■□ 3.02
C9orf40-201ENST00000376854 ATP10AO60312 1499 aa33.91■■■■□ 3.02
C9orf40-201ENST00000376854 DISP3Q9P2K9 1392 aa33.9■■■■□ 3.02
C9orf40-201ENST00000376854 EIF2AK4Q9P2K8 1649 aaKnown RBP33.9■■■■□ 3.02
C9orf40-201ENST00000376854 SPAG9O60271 1321 aaKnown RBP33.88■■■■□ 3.01
C9orf40-201ENST00000376854 WASHC2CQ9Y4E1 1318 aa33.86■■■■□ 3.01
C9orf40-201ENST00000376854 ZFYVE16Q7Z3T8 1539 aa33.83■■■■□ 3.01
C9orf40-201ENST00000376854 SALL2Q9Y467 1007 aaPredicted RBP33.82■■■■□ 3.01
C9orf40-201ENST00000376854 RRP1P56182 461 aaKnown RBP33.82■■■■□ 3
C9orf40-201ENST00000376854 TMF1P82094 1093 aa33.82■■■■□ 3
C9orf40-201ENST00000376854 CC2D1BQ5T0F9 858 aaKnown RBP33.81■■■■□ 3
C9orf40-201ENST00000376854 WDR7Q9Y4E6 1490 aa33.81■■■■□ 3
C9orf40-201ENST00000376854 PDE3BQ13370 1112 aa33.81■■■■□ 3
C9orf40-201ENST00000376854 PANK3Q9H999 370 aa33.81■■■■□ 3
C9orf40-201ENST00000376854 ARAP3Q8WWN8 1544 aa33.8■■■■□ 3
C9orf40-201ENST00000376854 RCAN3Q9UKA8 241 aa33.79■■■■□ 3
C9orf40-201ENST00000376854 RTEL1-TNFRSF6BF6WH68 1400 aa33.77■■■■□ 3
C9orf40-201ENST00000376854 FANCAO15360 1455 aa33.74■■■□□ 2.99
C9orf40-201ENST00000376854 RNF17Q9BXT8 1623 aaKnown RBP33.71■■■□□ 2.99
C9orf40-201ENST00000376854 INSRP06213 1382 aa33.71■■■□□ 2.99
C9orf40-201ENST00000376854 ABCA9Q8IUA7 1624 aa33.7■■■□□ 2.99
C9orf40-201ENST00000376854 EXOC6Q8TAG9 804 aa33.69■■■□□ 2.98
C9orf40-201ENST00000376854 BLMP54132 1417 aaPredicted RBP33.68■■■□□ 2.98
C9orf40-201ENST00000376854 ZMYM4Q5VZL5 1548 aa33.67■■■□□ 2.98
C9orf40-201ENST00000376854 ATP7AQ04656 1500 aa33.67■■■□□ 2.98
C9orf40-201ENST00000376854 CDCA7LQ96GN5 454 aa33.67■■■□□ 2.98
C9orf40-201ENST00000376854 INO80Q9ULG1 1556 aaPredicted RBP33.65■■■□□ 2.98
C9orf40-201ENST00000376854 DEPDC5O75140 1603 aa33.64■■■□□ 2.98
C9orf40-201ENST00000376854 TRPM2O94759 1503 aa33.64■■■□□ 2.98
C9orf40-201ENST00000376854 MYT1LQ9UL68 1186 aa33.63■■■□□ 2.97
C9orf40-201ENST00000376854 SCAPERQ9BY12 1400 aa33.63■■■□□ 2.97
C9orf40-201ENST00000376854 ADGRL1O94910 1474 aa33.62■■■□□ 2.97
C9orf40-201ENST00000376854 NOP58Q9Y2X3 529 aaKnown RBP33.62■■■□□ 2.97
C9orf40-201ENST00000376854 ASXL2Q76L83 1435 aa33.62■■■□□ 2.97
C9orf40-201ENST00000376854 MADDQ8WXG6 1647 aa33.62■■■□□ 2.97
C9orf40-201ENST00000376854 PTPRTO14522 1441 aa33.61■■■□□ 2.97
C9orf40-201ENST00000376854 SPHKAPQ2M3C7 1700 aa33.6■■■□□ 2.97
C9orf40-201ENST00000376854 CLTCL1P53675 1640 aa33.6■■■□□ 2.97
C9orf40-201ENST00000376854 KIF3BO15066 747 aa33.59■■■□□ 2.97
C9orf40-201ENST00000376854 ANP32AP39687 249 aaKnown RBP33.57■■■□□ 2.96
C9orf40-201ENST00000376854 TET3O43151 1660 aa33.56■■■□□ 2.96
C9orf40-201ENST00000376854 CEP152O94986 1710 aa33.55■■■□□ 2.96
C9orf40-201ENST00000376854 KNSTRNQ9Y448 316 aa33.55■■■□□ 2.96
C9orf40-201ENST00000376854 IQGAP1P46940 1657 aa33.54■■■□□ 2.96
C9orf40-201ENST00000376854 VWDEQ8N2E2 1590 aa33.53■■■□□ 2.96
C9orf40-201ENST00000376854 STAC3Q96MF2 364 aa33.53■■■□□ 2.96
C9orf40-201ENST00000376854 KANK1Q14678 1352 aa33.53■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms