RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 LETM1O95202 739 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-204ENST00000375290 BRD4O60885 1362 aaPredicted RBP12.61□□□□□ -0.39
PTCH1-204ENST00000375290 SPAG9O60271 1321 aaKnown RBP12.6□□□□□ -0.39
PTCH1-204ENST00000375290 CC2D1BQ5T0F9 858 aaKnown RBP12.6□□□□□ -0.39
PTCH1-204ENST00000375290 CAVIN1Q6NZI2 390 aaKnown RBP12.6□□□□□ -0.39
PTCH1-204ENST00000375290 HDGFL2Q7Z4V5 671 aaPredicted RBP12.59□□□□□ -0.39
PTCH1-204ENST00000375290 PLEKHH2Q8IVE3 1493 aa12.59□□□□□ -0.39
PTCH1-204ENST00000375290 ARGLU1Q9NWB6 273 aaPredicted RBP12.59□□□□□ -0.39
PTCH1-204ENST00000375290 DDX19BQ9UMR2 479 aa12.58□□□□□ -0.39
PTCH1-204ENST00000375290 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.58□□□□□ -0.39
PTCH1-204ENST00000375290 CCDC144AA2RUR9 1427 aa12.58□□□□□ -0.4
PTCH1-204ENST00000375290 PDS5BQ9NTI5 1447 aa12.58□□□□□ -0.4
PTCH1-204ENST00000375290 RRP9O43818 475 aaKnown RBP12.58□□□□□ -0.4
PTCH1-204ENST00000375290 SLKQ9H2G2 1235 aaPredicted RBP12.58□□□□□ -0.4
PTCH1-204ENST00000375290 TERF2IPQ9NYB0 399 aa12.58□□□□□ -0.4
PTCH1-204ENST00000375290 EFCAB5A4FU69 1503 aa12.58□□□□□ -0.4
PTCH1-204ENST00000375290 POGKQ9P215 609 aa12.58□□□□□ -0.4
PTCH1-204ENST00000375290 ACBD3Q9H3P7 528 aa12.58□□□□□ -0.4
PTCH1-204ENST00000375290 CWC15Q9P013 229 aaKnown RBP12.57□□□□□ -0.4
PTCH1-204ENST00000375290 RRBP1Q9P2E9 1410 aaKnown RBP12.57□□□□□ -0.4
PTCH1-204ENST00000375290 RGL3Q3MIN7 710 aa12.57□□□□□ -0.4
PTCH1-204ENST00000375290 LRRFIP1Q32MZ4 808 aaKnown RBP12.57□□□□□ -0.4
PTCH1-204ENST00000375290 NUP155O75694 1391 aa12.56□□□□□ -0.4
PTCH1-204ENST00000375290 GNL2Q13823 731 aaKnown RBP12.56□□□□□ -0.4
PTCH1-204ENST00000375290 ITPRIPQ8IWB1 547 aa12.56□□□□□ -0.4
PTCH1-204ENST00000375290 WWC1Q8IX03 1113 aa12.56□□□□□ -0.4
PTCH1-204ENST00000375290 RTF1Q92541 710 aaKnown RBP12.56□□□□□ -0.4
PTCH1-204ENST00000375290 MCM2P49736 904 aa12.56□□□□□ -0.4
PTCH1-204ENST00000375290 DDX49Q9Y6V7 483 aaKnown RBP12.56□□□□□ -0.4
PTCH1-204ENST00000375290 EIF4G1Q04637 1599 aaKnown RBP12.55□□□□□ -0.4
PTCH1-204ENST00000375290 CCP110O43303 1012 aa12.55□□□□□ -0.4
PTCH1-204ENST00000375290 MBD3O95983 291 aa12.55□□□□□ -0.4
PTCH1-204ENST00000375290 CCDC39Q9UFE4 941 aa12.55□□□□□ -0.4
PTCH1-204ENST00000375290 FYCO1Q9BQS8 1478 aa12.55□□□□□ -0.4
PTCH1-204ENST00000375290 PKD2Q13563 968 aa12.54□□□□□ -0.4
PTCH1-204ENST00000375290 USP47Q96K76 1375 aa12.54□□□□□ -0.4
PTCH1-204ENST00000375290 GOLGA6L19H0YKK7 550 aa12.54□□□□□ -0.4
PTCH1-204ENST00000375290 TPM1P09493 284 aa12.54□□□□□ -0.4
PTCH1-204ENST00000375290 MYOM3Q5VTT5 1437 aa12.54□□□□□ -0.4
PTCH1-204ENST00000375290 SMC4Q9NTJ3 1288 aa12.53□□□□□ -0.4
PTCH1-204ENST00000375290 U2SURPO15042 1029 aaKnown RBP12.53□□□□□ -0.4
PTCH1-204ENST00000375290 KIF7Q2M1P5 1343 aa12.53□□□□□ -0.4
PTCH1-204ENST00000375290 CT47B1P0C2W7 299 aaPredicted RBP12.53□□□□□ -0.4
PTCH1-204ENST00000375290 NEUROD2Q15784 382 aa12.53□□□□□ -0.4
PTCH1-204ENST00000375290 ZKSCAN2Q63HK3 967 aa12.53□□□□□ -0.4
PTCH1-204ENST00000375290 STK31Q9BXU1 1019 aa12.53□□□□□ -0.4
PTCH1-204ENST00000375290 HOOK1Q9UJC3 728 aaKnown RBP12.52□□□□□ -0.4
PTCH1-204ENST00000375290 CCDC173Q0VFZ6 552 aa12.52□□□□□ -0.41
PTCH1-204ENST00000375290 L3MBTL2Q969R5 705 aa12.51□□□□□ -0.41
PTCH1-204ENST00000375290 GZF1Q9H116 711 aaPredicted RBP12.51□□□□□ -0.41
PTCH1-204ENST00000375290 VSIG10Q8N0Z9 540 aa12.51□□□□□ -0.41
PTCH1-204ENST00000375290 CDR1P51861 262 aa12.51□□□□□ -0.41
PTCH1-204ENST00000375290 TSPYL1Q9H0U9 437 aa12.5□□□□□ -0.41
PTCH1-204ENST00000375290 MFAP1P55081 439 aaKnown RBP12.5□□□□□ -0.41
PTCH1-204ENST00000375290 PDCL2Q8N4E4 241 aa12.5□□□□□ -0.41
PTCH1-204ENST00000375290 RUFY2Q8WXA3 655 aa12.49□□□□□ -0.41
PTCH1-204ENST00000375290 NAT10Q9H0A0 1025 aaKnown RBP12.49□□□□□ -0.41
PTCH1-204ENST00000375290 TSR1Q2NL82 804 aaKnown RBP12.49□□□□□ -0.41
PTCH1-204ENST00000375290 CIZ1Q9ULV3 898 aaPredicted RBP12.49□□□□□ -0.41
PTCH1-204ENST00000375290 MAP3K1Q13233 1512 aa12.49□□□□□ -0.41
PTCH1-204ENST00000375290 FGD6Q6ZV73 1430 aa12.48□□□□□ -0.41
PTCH1-204ENST00000375290 ERCC4Q92889 916 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-204ENST00000375290 SMG6Q86US8 1419 aaKnown RBP12.48□□□□□ -0.41
PTCH1-204ENST00000375290 NOC3LQ8WTT2 800 aaKnown RBP12.48□□□□□ -0.41
PTCH1-204ENST00000375290 KANK4Q5T7N3 995 aaPredicted RBP12.48□□□□□ -0.41
PTCH1-204ENST00000375290 CCDC7Q96M83 1385 aa12.48□□□□□ -0.41
PTCH1-204ENST00000375290 LRRC9Q6ZRR7 1453 aa12.47□□□□□ -0.41
PTCH1-204ENST00000375290 U2AF1L5P0DN76 240 aaPredicted RBP12.47□□□□□ -0.41
PTCH1-204ENST00000375290 U2AF1Q01081 240 aaKnown RBP eCLIP12.47□□□□□ -0.41
PTCH1-204ENST00000375290 FAM184AQ8NB25 1140 aa12.47□□□□□ -0.41
PTCH1-204ENST00000375290 NFKBIBQ15653 356 aa12.46□□□□□ -0.41
PTCH1-204ENST00000375290 ANO8Q9HCE9 1232 aaPredicted RBP12.46□□□□□ -0.41
PTCH1-204ENST00000375290 BECN2A8MW95 431 aa12.46□□□□□ -0.41
PTCH1-204ENST00000375290 ANKRD20A12PQ8NF67 263 aa12.46□□□□□ -0.42
PTCH1-204ENST00000375290 INTS3Q68E01 1043 aaKnown RBP12.46□□□□□ -0.42
PTCH1-204ENST00000375290 IPO7O95373 1038 aaKnown RBP12.45□□□□□ -0.42
PTCH1-204ENST00000375290 ZKSCAN1P17029 563 aaPredicted RBP12.45□□□□□ -0.42
PTCH1-204ENST00000375290 ZNF771Q7L3S4 317 aaPredicted RBP12.45□□□□□ -0.42
PTCH1-204ENST00000375290 PDE3AQ14432 1141 aa12.45□□□□□ -0.42
PTCH1-204ENST00000375290 RNF20Q5VTR2 975 aa12.45□□□□□ -0.42
PTCH1-204ENST00000375290 CASKIN1Q8WXD9 1431 aa12.45□□□□□ -0.42
PTCH1-204ENST00000375290 CWC22Q9HCG8 908 aaKnown RBP12.45□□□□□ -0.42
PTCH1-204ENST00000375290 ZNF428Q96B54 188 aa12.44□□□□□ -0.42
PTCH1-204ENST00000375290 HSP90B2PQ58FF3 399 aa12.44□□□□□ -0.42
PTCH1-204ENST00000375290 EHBP1L1Q8N3D4 1523 aa12.44□□□□□ -0.42
PTCH1-204ENST00000375290 NASPP49321 788 aaPredicted RBP12.44□□□□□ -0.42
PTCH1-204ENST00000375290 API5Q9BZZ5 524 aaKnown RBP12.43□□□□□ -0.42
PTCH1-204ENST00000375290 DHX29Q7Z478 1369 aaKnown RBP12.43□□□□□ -0.42
PTCH1-204ENST00000375290 SRPK2P78362 688 aaKnown RBP12.43□□□□□ -0.42
PTCH1-204ENST00000375290 EFCAB2Q5VUJ9 269 aa12.43□□□□□ -0.42
PTCH1-204ENST00000375290 PDCP20941 246 aa12.43□□□□□ -0.42
PTCH1-204ENST00000375290 HSP90AB4PQ58FF6 505 aa12.43□□□□□ -0.42
PTCH1-204ENST00000375290 SUPT6HQ7KZ85 1726 aaKnown RBP12.43□□□□□ -0.42
PTCH1-204ENST00000375290 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.42□□□□□ -0.42
PTCH1-204ENST00000375290 CPLX2Q6PUV4 134 aaKnown RBP12.42□□□□□ -0.42
PTCH1-204ENST00000375290 HFM1A2PYH4 1435 aa12.42□□□□□ -0.42
PTCH1-204ENST00000375290 AK7Q96M32 723 aa12.41□□□□□ -0.42
PTCH1-204ENST00000375290 CLUAP1Q96AJ1 413 aa12.41□□□□□ -0.42
PTCH1-204ENST00000375290 USP8P40818 1118 aa12.4□□□□□ -0.42
PTCH1-204ENST00000375290 MCM5P33992 734 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms