RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 NGDNQ8NEJ9 315 aaKnown RBP8.01□□□□□ -1.13
UPF2-201ENST00000356352 ATP6V1DQ9Y5K8 247 aa8.01□□□□□ -1.13
UPF2-201ENST00000356352 SMARCA2P51531 1590 aa8.01□□□□□ -1.13
UPF2-201ENST00000356352 TSR1Q2NL82 804 aaKnown RBP8.01□□□□□ -1.13
UPF2-201ENST00000356352 CCDC18Q5T9S5 1454 aa8.01□□□□□ -1.13
UPF2-201ENST00000356352 FRAT2O75474 233 aaPredicted RBP8□□□□□ -1.13
UPF2-201ENST00000356352 SF3A1Q15459 793 aaKnown RBP8□□□□□ -1.13
UPF2-201ENST00000356352 AMOTL1Q8IY63 956 aa8□□□□□ -1.13
UPF2-201ENST00000356352 TPM1P09493 284 aa8□□□□□ -1.13
UPF2-201ENST00000356352 GTF2E1P29083 439 aaPredicted RBP8□□□□□ -1.13
UPF2-201ENST00000356352 NLRP13Q86W25 1043 aa8□□□□□ -1.13
UPF2-201ENST00000356352 CCDC70Q6NSX1 233 aa8□□□□□ -1.13
UPF2-201ENST00000356352 SETQ01105 290 aaPredicted RBP7.99□□□□□ -1.13
UPF2-201ENST00000356352 RBM19Q9Y4C8 960 aaKnown RBP7.99□□□□□ -1.13
UPF2-201ENST00000356352 KIF15Q9NS87 1388 aa7.99□□□□□ -1.13
UPF2-201ENST00000356352 AKAP17AQ02040 695 aaKnown RBP7.99□□□□□ -1.13
UPF2-201ENST00000356352 TPD52L1Q16890 204 aaPredicted RBP7.99□□□□□ -1.13
UPF2-201ENST00000356352 TOMM22Q9NS69 142 aa7.99□□□□□ -1.13
UPF2-201ENST00000356352 VPS53Q5VIR6 699 aa7.99□□□□□ -1.13
UPF2-201ENST00000356352 SLC4A10Q6U841 1118 aa7.99□□□□□ -1.13
UPF2-201ENST00000356352 SLKQ9H2G2 1235 aaPredicted RBP7.99□□□□□ -1.13
UPF2-201ENST00000356352 H3BQV1 296 aa7.99□□□□□ -1.13
UPF2-201ENST00000356352 IFFO2Q5TF58 517 aa7.99□□□□□ -1.13
UPF2-201ENST00000356352 SYNE3Q6ZMZ3 975 aa7.98□□□□□ -1.13
UPF2-201ENST00000356352 NOL10Q9BSC4 688 aaKnown RBP7.98□□□□□ -1.13
UPF2-201ENST00000356352 SKOR2Q2VWA4 1001 aaPredicted RBP7.98□□□□□ -1.13
UPF2-201ENST00000356352 SOGA1O94964 1423 aa7.98□□□□□ -1.13
UPF2-201ENST00000356352 KIF3BO15066 747 aa7.98□□□□□ -1.13
UPF2-201ENST00000356352 CCDC47Q96A33 483 aaKnown RBP7.98□□□□□ -1.13
UPF2-201ENST00000356352 WASHC2CQ9Y4E1 1318 aa7.98□□□□□ -1.13
UPF2-201ENST00000356352 C1orf141Q5JVX7 400 aa7.97□□□□□ -1.13
UPF2-201ENST00000356352 GZF1Q9H116 711 aaPredicted RBP7.97□□□□□ -1.13
UPF2-201ENST00000356352 RAB3GAP2Q9H2M9 1393 aa7.97□□□□□ -1.13
UPF2-201ENST00000356352 GPS2Q13227 327 aa7.97□□□□□ -1.13
UPF2-201ENST00000356352 FAM184AQ8NB25 1140 aa7.97□□□□□ -1.13
UPF2-201ENST00000356352 IPO9Q96P70 1041 aaKnown RBP7.97□□□□□ -1.13
UPF2-201ENST00000356352 CPLX2Q6PUV4 134 aaKnown RBP7.97□□□□□ -1.13
UPF2-201ENST00000356352 CREBRFQ8IUR6 639 aa7.97□□□□□ -1.13
UPF2-201ENST00000356352 TCEAL9Q9UHQ7 104 aa7.96□□□□□ -1.13
UPF2-201ENST00000356352 RUFY2Q8WXA3 655 aa7.96□□□□□ -1.14
UPF2-201ENST00000356352 TRIM34Q9BYJ4 488 aa7.96□□□□□ -1.14
UPF2-201ENST00000356352 GOLGA6L19H0YKK7 550 aa7.96□□□□□ -1.14
UPF2-201ENST00000356352 MYBBP1AQ9BQG0 1328 aaKnown RBP7.96□□□□□ -1.14
UPF2-201ENST00000356352 ROCK1Q13464 1354 aa7.96□□□□□ -1.14
UPF2-201ENST00000356352 HOOK1Q9UJC3 728 aaKnown RBP7.95□□□□□ -1.14
UPF2-201ENST00000356352 CTDP1Q9Y5B0 961 aaPredicted RBP7.95□□□□□ -1.14
UPF2-201ENST00000356352 NEXNQ0ZGT2 675 aa7.95□□□□□ -1.14
UPF2-201ENST00000356352 TRIM29Q14134 588 aa7.95□□□□□ -1.14
UPF2-201ENST00000356352 CENPQQ7L2Z9 268 aaPredicted RBP7.95□□□□□ -1.14
UPF2-201ENST00000356352 ANKRD20A12PQ8NF67 263 aa7.95□□□□□ -1.14
UPF2-201ENST00000356352 COG3Q96JB2 828 aa7.95□□□□□ -1.14
UPF2-201ENST00000356352 NGEFQ8N5V2 710 aa7.95□□□□□ -1.14
UPF2-201ENST00000356352 CGNL1Q0VF96 1302 aa7.94□□□□□ -1.14
UPF2-201ENST00000356352 CCDC144AA2RUR9 1427 aa7.94□□□□□ -1.14
UPF2-201ENST00000356352 E9PSI1 815 aa7.94□□□□□ -1.14
UPF2-201ENST00000356352 PES1O00541 588 aaKnown RBP7.94□□□□□ -1.14
UPF2-201ENST00000356352 EVC2Q86UK5 1308 aa7.94□□□□□ -1.14
UPF2-201ENST00000356352 TTC5Q8N0Z6 440 aa7.94□□□□□ -1.14
UPF2-201ENST00000356352 BECN2A8MW95 431 aa7.93□□□□□ -1.14
UPF2-201ENST00000356352 IPO7O95373 1038 aaKnown RBP7.93□□□□□ -1.14
UPF2-201ENST00000356352 FOXD1Q16676 465 aa7.93□□□□□ -1.14
UPF2-201ENST00000356352 DIAPH3Q9NSV4 1193 aa7.93□□□□□ -1.14
UPF2-201ENST00000356352 ZKSCAN2Q63HK3 967 aa7.93□□□□□ -1.14
UPF2-201ENST00000356352 WWC1Q8IX03 1113 aa7.93□□□□□ -1.14
UPF2-201ENST00000356352 RAPGEF2Q9Y4G8 1499 aa7.93□□□□□ -1.14
UPF2-201ENST00000356352 VGFO15240 615 aaPredicted RBP7.93□□□□□ -1.14
UPF2-201ENST00000356352 PDE4CQ08493 712 aa7.93□□□□□ -1.14
UPF2-201ENST00000356352 NOL8Q76FK4 1167 aaKnown RBP7.93□□□□□ -1.14
UPF2-201ENST00000356352 CCDC146Q8IYE0 955 aa7.92□□□□□ -1.14
UPF2-201ENST00000356352 ANO8Q9HCE9 1232 aaPredicted RBP7.92□□□□□ -1.14
UPF2-201ENST00000356352 REC8O95072 547 aa7.92□□□□□ -1.14
UPF2-201ENST00000356352 ZKSCAN1P17029 563 aaPredicted RBP7.92□□□□□ -1.14
UPF2-201ENST00000356352 EVA1CP58658 441 aa7.92□□□□□ -1.14
UPF2-201ENST00000356352 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.92□□□□□ -1.141e-6■■■□□ 14.8
UPF2-201ENST00000356352 DDX58O95786 925 aaKnown RBP7.92□□□□□ -1.14
UPF2-201ENST00000356352 TEFQ10587 303 aa7.92□□□□□ -1.14
UPF2-201ENST00000356352 RNF20Q5VTR2 975 aa7.92□□□□□ -1.14
UPF2-201ENST00000356352 RILPL2Q969X0 211 aa7.92□□□□□ -1.14
UPF2-201ENST00000356352 LTV1Q96GA3 475 aaPredicted RBP7.92□□□□□ -1.14
UPF2-201ENST00000356352 FAM161AQ3B820 660 aa7.91□□□□□ -1.14
UPF2-201ENST00000356352 CLUAP1Q96AJ1 413 aa7.91□□□□□ -1.14
UPF2-201ENST00000356352 HNRNPMP52272 730 aaKnown RBP eCLIP7.91□□□□□ -1.143e-6■□□□□ 9.1
UPF2-201ENST00000356352 AMER1Q5JTC6 1135 aaPredicted RBP7.91□□□□□ -1.14
UPF2-201ENST00000356352 CCDC88BA6NC98 1476 aa7.91□□□□□ -1.14
UPF2-201ENST00000356352 CDR1P51861 262 aa7.9□□□□□ -1.14
UPF2-201ENST00000356352 TRDNQ13061 729 aa7.9□□□□□ -1.14
UPF2-201ENST00000356352 L3MBTL2Q969R5 705 aa7.9□□□□□ -1.14
UPF2-201ENST00000356352 API5Q9BZZ5 524 aaKnown RBP7.9□□□□□ -1.14
UPF2-201ENST00000356352 HSP90AB4PQ58FF6 505 aa7.9□□□□□ -1.15
UPF2-201ENST00000356352 KRI1Q8N9T8 703 aaKnown RBP7.9□□□□□ -1.15
UPF2-201ENST00000356352 FOXD4L1Q9NU39 408 aa7.9□□□□□ -1.15
UPF2-201ENST00000356352 DDX19BQ9UMR2 479 aa7.9□□□□□ -1.15
UPF2-201ENST00000356352 ERICH2A1L162 156 aa7.89□□□□□ -1.15
UPF2-201ENST00000356352 KANK4Q5T7N3 995 aaPredicted RBP7.89□□□□□ -1.15
UPF2-201ENST00000356352 ANKRD45Q5TZF3 282 aa7.89□□□□□ -1.15
UPF2-201ENST00000356352 PCMTD1Q96MG8 357 aaPredicted RBP7.89□□□□□ -1.15
UPF2-201ENST00000356352 DDX49Q9Y6V7 483 aaKnown RBP7.89□□□□□ -1.15
UPF2-201ENST00000356352 CPLX1O14810 134 aa7.89□□□□□ -1.15
UPF2-201ENST00000356352 IFIT2P09913 472 aaKnown RBP7.89□□□□□ -1.15
UPF2-201ENST00000356352 C9orf78Q9NZ63 289 aaPredicted RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms