RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 MROH1Q8NDA8 1641 aa28.24■■■□□ 2.11
CHMP4A-201ENST00000347519 TRIM52Q96A61 297 aa28.24■■■□□ 2.11
CHMP4A-201ENST00000347519 RNF17Q9BXT8 1623 aaKnown RBP28.22■■■□□ 2.11
CHMP4A-201ENST00000347519 KDM4FA0A1W2PPD8 638 aa28.22■■■□□ 2.11
CHMP4A-201ENST00000347519 AGLP35573 1532 aa28.2■■■□□ 2.11
CHMP4A-201ENST00000347519 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.19■■■□□ 2.11e-7■■■■□ 21.7
CHMP4A-201ENST00000347519 PZPP20742 1482 aa28.18■■■□□ 2.1
CHMP4A-201ENST00000347519 KDM5DQ9BY66 1539 aa28.18■■■□□ 2.1
CHMP4A-201ENST00000347519 DHX57Q6P158 1386 aaKnown RBP28.18■■■□□ 2.1
CHMP4A-201ENST00000347519 NUP155O75694 1391 aa28.17■■■□□ 2.1
CHMP4A-201ENST00000347519 PRDM15P57071 1507 aaPredicted RBP28.15■■■□□ 2.1
CHMP4A-201ENST00000347519 IQGAP3Q86VI3 1631 aa28.14■■■□□ 2.1
CHMP4A-201ENST00000347519 VWDEQ8N2E2 1590 aa28.13■■■□□ 2.09
CHMP4A-201ENST00000347519 GGT6Q6P531 493 aa28.13■■■□□ 2.09
CHMP4A-201ENST00000347519 FAM135AQ9P2D6 1515 aa28.11■■■□□ 2.09
CHMP4A-201ENST00000347519 MPHOSPH9Q99550 1183 aa28.11■■■□□ 2.09
CHMP4A-201ENST00000347519 ACIN1Q9UKV3 1341 aaKnown RBP28.1■■■□□ 2.09
CHMP4A-201ENST00000347519 CEP152O94986 1710 aa28.09■■■□□ 2.09
CHMP4A-201ENST00000347519 ARID4BQ4LE39 1312 aaPredicted RBP28.06■■■□□ 2.08
CHMP4A-201ENST00000347519 MLECQ14165 292 aa28.06■■■□□ 2.08
CHMP4A-201ENST00000347519 SLC4A1APQ9BWU0 796 aaKnown RBP28.06■■■□□ 2.08
CHMP4A-201ENST00000347519 KANK1Q14678 1352 aa28.04■■■□□ 2.08
CHMP4A-201ENST00000347519 ABCC3O15438 1527 aa28.03■■■□□ 2.08
CHMP4A-201ENST00000347519 FOXD1Q16676 465 aa28.02■■■□□ 2.08
CHMP4A-201ENST00000347519 CCER1Q8TC90 406 aaPredicted RBP28.02■■■□□ 2.08
CHMP4A-201ENST00000347519 TET3O43151 1660 aa28.01■■■□□ 2.08
CHMP4A-201ENST00000347519 LMTK2Q8IWU2 1503 aa28.01■■■□□ 2.07
CHMP4A-201ENST00000347519 PKD2Q13563 968 aa27.99■■■□□ 2.07
CHMP4A-201ENST00000347519 E9PCH4 1651 aa27.99■■■□□ 2.07
CHMP4A-201ENST00000347519 CLTCQ00610 1675 aaKnown RBP27.98■■■□□ 2.07
CHMP4A-201ENST00000347519 ZC3H13Q5T200 1668 aaKnown RBP27.98■■■□□ 2.07
CHMP4A-201ENST00000347519 CAMSAP1Q5T5Y3 1602 aa27.97■■■□□ 2.07
CHMP4A-201ENST00000347519 WASHC2CQ9Y4E1 1318 aa27.96■■■□□ 2.07
CHMP4A-201ENST00000347519 EFCAB6Q5THR3 1501 aa27.96■■■□□ 2.07
CHMP4A-201ENST00000347519 PPP6R1Q9UPN7 881 aa27.92■■■□□ 2.06
CHMP4A-201ENST00000347519 CFAP65Q6ZU64 1925 aaKnown RBP27.89■■■□□ 2.06
CHMP4A-201ENST00000347519 FER1L4A9Z1Z3 1794 aa27.89■■■□□ 2.06
CHMP4A-201ENST00000347519 NPATQ14207 1427 aa27.88■■■□□ 2.05
CHMP4A-201ENST00000347519 ANKRD30BQ9BXX2 1392 aa27.88■■■□□ 2.05
CHMP4A-201ENST00000347519 ADAMTSL3P82987 1691 aa27.87■■■□□ 2.05
CHMP4A-201ENST00000347519 PLA2R1Q13018 1463 aa27.86■■■□□ 2.05
CHMP4A-201ENST00000347519 MADDQ8WXG6 1647 aa27.85■■■□□ 2.05
CHMP4A-201ENST00000347519 SIN3AQ96ST3 1273 aa27.84■■■□□ 2.05
CHMP4A-201ENST00000347519 ARHGAP31Q2M1Z3 1444 aa27.84■■■□□ 2.05
CHMP4A-201ENST00000347519 SPHKAPQ2M3C7 1700 aa27.83■■■□□ 2.05
CHMP4A-201ENST00000347519 MROH2AA6NES4 1674 aa27.82■■■□□ 2.04
CHMP4A-201ENST00000347519 CLSPNQ9HAW4 1339 aa27.81■■■□□ 2.04
CHMP4A-201ENST00000347519 RPRD2Q5VT52 1461 aaKnown RBP27.81■■■□□ 2.04
CHMP4A-201ENST00000347519 ESF1Q9H501 851 aaKnown RBP27.8■■■□□ 2.04
CHMP4A-201ENST00000347519 RIMS1Q86UR5 1692 aaKnown RBP27.8■■■□□ 2.04
CHMP4A-201ENST00000347519 PTPRTO14522 1441 aa27.79■■■□□ 2.04
CHMP4A-201ENST00000347519 CNTLNQ9NXG0 1405 aa27.79■■■□□ 2.04
CHMP4A-201ENST00000347519 ZMYM3Q14202 1370 aa27.79■■■□□ 2.04
CHMP4A-201ENST00000347519 PREX1Q8TCU6 1659 aa27.79■■■□□ 2.04
CHMP4A-201ENST00000347519 FBXO31Q5XUX0 539 aaPredicted RBP27.76■■■□□ 2.03
CHMP4A-201ENST00000347519 C3P01024 1663 aa27.76■■■□□ 2.03
CHMP4A-201ENST00000347519 TRPM2O94759 1503 aa27.75■■■□□ 2.03
CHMP4A-201ENST00000347519 NOS1P29475 1434 aa27.75■■■□□ 2.03
CHMP4A-201ENST00000347519 SYNMO15061 1565 aa27.74■■■□□ 2.03
CHMP4A-201ENST00000347519 NEUROD1Q13562 356 aa27.73■■■□□ 2.03
CHMP4A-201ENST00000347519 ERVK-7P63135 1459 aa27.73■■■□□ 2.03
CHMP4A-201ENST00000347519 UGGT1Q9NYU2 1555 aa27.73■■■□□ 2.03
CHMP4A-201ENST00000347519 CLTCL1P53675 1640 aa27.73■■■□□ 2.03
CHMP4A-201ENST00000347519 CEBPAP49715 358 aaPredicted RBP27.72■■■□□ 2.03
CHMP4A-201ENST00000347519 SPATA31D1Q6ZQQ2 1576 aa27.7■■■□□ 2.02
CHMP4A-201ENST00000347519 CCDC144AA2RUR9 1427 aa27.66■■■□□ 2.02
CHMP4A-201ENST00000347519 PLPPR3Q6T4P5 718 aa27.66■■■□□ 2.02
CHMP4A-201ENST00000347519 PIK3C2BO00750 1634 aa27.65■■■□□ 2.02
CHMP4A-201ENST00000347519 PTPRMP28827 1452 aa27.6■■■□□ 2.01
CHMP4A-201ENST00000347519 KIF1BO60333 1816 aa27.58■■■□□ 2.01
CHMP4A-201ENST00000347519 TNRQ92752 1358 aa27.58■■■□□ 2.01
CHMP4A-201ENST00000347519 IDI1Q13907 227 aa27.58■■■□□ 2.01
CHMP4A-201ENST00000347519 SPATA31E1Q6ZUB1 1445 aa27.55■■■□□ 2
CHMP4A-201ENST00000347519 MYO5BQ9ULV0 1848 aa27.54■■■□□ 2
CHMP4A-201ENST00000347519 SLC52A1Q9NWF4 448 aa27.53■■■□□ 2
CHMP4A-201ENST00000347519 TONSLQ96HA7 1378 aa27.51■■■□□ 2
CHMP4A-201ENST00000347519 ADGRB3O60242 1522 aa27.51■■■□□ 2
CHMP4A-201ENST00000347519 L3MBTL2Q969R5 705 aa27.5■■□□□ 1.99
CHMP4A-201ENST00000347519 TMEM131LA2VDJ0 1609 aa27.5■■□□□ 1.99
CHMP4A-201ENST00000347519 RGL3Q3MIN7 710 aa27.49■■□□□ 1.99
CHMP4A-201ENST00000347519 CHGAP10645 457 aaKnown RBP27.48■■□□□ 1.99
CHMP4A-201ENST00000347519 NEURL4Q96JN8 1562 aa27.48■■□□□ 1.99
CHMP4A-201ENST00000347519 MYO3AQ8NEV4 1616 aa27.48■■□□□ 1.99
CHMP4A-201ENST00000347519 ZEB1P37275 1124 aaPredicted RBP27.47■■□□□ 1.99
CHMP4A-201ENST00000347519 TIMELESSQ9UNS1 1208 aa27.45■■□□□ 1.98
CHMP4A-201ENST00000347519 NLRP1Q9C000 1473 aa27.44■■□□□ 1.98
CHMP4A-201ENST00000347519 UBR1Q8IWV7 1749 aa27.44■■□□□ 1.98
CHMP4A-201ENST00000347519 IFT172Q9UG01 1749 aa27.42■■□□□ 1.98
CHMP4A-201ENST00000347519 A2ML1A8K2U0 1454 aa27.42■■□□□ 1.98
CHMP4A-201ENST00000347519 SETD1BQ9UPS6 1966 aaKnown RBP27.42■■□□□ 1.98
CHMP4A-201ENST00000347519 KDM5AP29375 1690 aaKnown RBP27.39■■□□□ 1.97
CHMP4A-201ENST00000347519 PPP1R15AO75807 674 aaPredicted RBP27.38■■□□□ 1.97
CHMP4A-201ENST00000347519 PPLO60437 1756 aa27.38■■□□□ 1.97
CHMP4A-201ENST00000347519 ZNF326Q5BKZ1 582 aaKnown RBP27.37■■□□□ 1.97
CHMP4A-201ENST00000347519 DCAF11Q8TEB1 546 aa27.37■■□□□ 1.97
CHMP4A-201ENST00000347519 CEP170BQ9Y4F5 1589 aaPredicted RBP27.37■■□□□ 1.97
CHMP4A-201ENST00000347519 NEXMIFQ5QGS0 1516 aa27.37■■□□□ 1.97
CHMP4A-201ENST00000347519 KDM2AQ9Y2K7 1162 aa27.36■■□□□ 1.97
CHMP4A-201ENST00000347519 ZNF142P52746 1687 aaPredicted RBP27.36■■□□□ 1.97
CHMP4A-201ENST00000347519 STAG3Q9UJ98 1225 aa27.35■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms