RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 PTPRMP28827 1452 aa31.49■■■□□ 2.63
SMARCB1-202ENST00000344921 PPP6R1Q9UPN7 881 aa31.46■■■□□ 2.63
SMARCB1-202ENST00000344921 ANKRD50Q9ULJ7 1429 aa31.45■■■□□ 2.62
SMARCB1-202ENST00000344921 CNTLNQ9NXG0 1405 aa31.43■■■□□ 2.62
SMARCB1-202ENST00000344921 WASHC2CQ9Y4E1 1318 aa31.42■■■□□ 2.62
SMARCB1-202ENST00000344921 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.41■■■□□ 2.622e-8■□□□□ 11.2
SMARCB1-202ENST00000344921 RNF17Q9BXT8 1623 aaKnown RBP31.41■■■□□ 2.62
SMARCB1-202ENST00000344921 CLTCQ00610 1675 aaKnown RBP31.4■■■□□ 2.62
SMARCB1-202ENST00000344921 CEBPAP49715 358 aaPredicted RBP31.39■■■□□ 2.62
SMARCB1-202ENST00000344921 KDM5DQ9BY66 1539 aa31.35■■■□□ 2.61
SMARCB1-202ENST00000344921 ZMYM3Q14202 1370 aa31.34■■■□□ 2.61
SMARCB1-202ENST00000344921 KANK1Q14678 1352 aa31.33■■■□□ 2.61
SMARCB1-202ENST00000344921 MROH2AA6NES4 1674 aa31.33■■■□□ 2.61
SMARCB1-202ENST00000344921 MROH1Q8NDA8 1641 aa31.32■■■□□ 2.6
SMARCB1-202ENST00000344921 C3P01024 1663 aa31.32■■■□□ 2.6
SMARCB1-202ENST00000344921 FAM135AQ9P2D6 1515 aa31.31■■■□□ 2.6
SMARCB1-202ENST00000344921 DEPDC5O75140 1603 aa31.3■■■□□ 2.6
SMARCB1-202ENST00000344921 PRDM15P57071 1507 aaPredicted RBP31.3■■■□□ 2.6
SMARCB1-202ENST00000344921 NAIPQ13075 1403 aa31.29■■■□□ 2.6
SMARCB1-202ENST00000344921 ZC3H13Q5T200 1668 aaKnown RBP31.27■■■□□ 2.6
SMARCB1-202ENST00000344921 HFM1A2PYH4 1435 aa31.27■■■□□ 2.6
SMARCB1-202ENST00000344921 ABCC3O15438 1527 aa31.26■■■□□ 2.6
SMARCB1-202ENST00000344921 GCC2Q8IWJ2 1684 aa31.26■■■□□ 2.59
SMARCB1-202ENST00000344921 CEP152O94986 1710 aa31.25■■■□□ 2.59
SMARCB1-202ENST00000344921 UNC13BO14795 1591 aa31.19■■■□□ 2.58
SMARCB1-202ENST00000344921 CAMSAP1Q5T5Y3 1602 aa31.18■■■□□ 2.58
SMARCB1-202ENST00000344921 NUP155O75694 1391 aa31.17■■■□□ 2.58
SMARCB1-202ENST00000344921 VWDEQ8N2E2 1590 aa31.16■■■□□ 2.58
SMARCB1-202ENST00000344921 PZPP20742 1482 aa31.16■■■□□ 2.58
SMARCB1-202ENST00000344921 FBXO31Q5XUX0 539 aaPredicted RBP31.15■■■□□ 2.58
SMARCB1-202ENST00000344921 NPATQ14207 1427 aa31.14■■■□□ 2.58
SMARCB1-202ENST00000344921 SETD1BQ9UPS6 1966 aaKnown RBP31.13■■■□□ 2.57
SMARCB1-202ENST00000344921 TRIM52Q96A61 297 aa31.12■■■□□ 2.57
SMARCB1-202ENST00000344921 LMTK2Q8IWU2 1503 aa31.11■■■□□ 2.57
SMARCB1-202ENST00000344921 CFAP65Q6ZU64 1925 aaKnown RBP31.1■■■□□ 2.57
SMARCB1-202ENST00000344921 PREX1Q8TCU6 1659 aa31.09■■■□□ 2.57
SMARCB1-202ENST00000344921 SETD5Q9C0A6 1442 aa31.09■■■□□ 2.57
SMARCB1-202ENST00000344921 UHRF1BP1Q6BDS2 1440 aa31.08■■■□□ 2.57
SMARCB1-202ENST00000344921 ARHGAP31Q2M1Z3 1444 aa31.08■■■□□ 2.57
SMARCB1-202ENST00000344921 IQGAP3Q86VI3 1631 aa31.07■■■□□ 2.56
SMARCB1-202ENST00000344921 TNRQ92752 1358 aa31.05■■■□□ 2.56
SMARCB1-202ENST00000344921 EFCAB6Q5THR3 1501 aa31.05■■■□□ 2.56
SMARCB1-202ENST00000344921 TET3O43151 1660 aa31.05■■■□□ 2.56
SMARCB1-202ENST00000344921 LMTK3Q96Q04 1460 aa31.03■■■□□ 2.56
SMARCB1-202ENST00000344921 ERVK-7P63135 1459 aa31.02■■■□□ 2.56
SMARCB1-202ENST00000344921 TRIM26Q12899 539 aaPredicted RBP31■■■□□ 2.55
SMARCB1-202ENST00000344921 SPATA31D1Q6ZQQ2 1576 aa30.99■■■□□ 2.55
SMARCB1-202ENST00000344921 MYO3AQ8NEV4 1616 aa30.99■■■□□ 2.55
SMARCB1-202ENST00000344921 RAB3GAP2Q9H2M9 1393 aa30.99■■■□□ 2.55
SMARCB1-202ENST00000344921 HSPA2P54652 639 aa30.98■■■□□ 2.55
SMARCB1-202ENST00000344921 RPRD2Q5VT52 1461 aaKnown RBP30.97■■■□□ 2.55
SMARCB1-202ENST00000344921 SLC4A1APQ9BWU0 796 aaKnown RBP30.95■■■□□ 2.54
SMARCB1-202ENST00000344921 ACIN1Q9UKV3 1341 aaKnown RBP30.95■■■□□ 2.54
SMARCB1-202ENST00000344921 E9PCH4 1651 aa30.94■■■□□ 2.54
SMARCB1-202ENST00000344921 CEP170BQ9Y4F5 1589 aaPredicted RBP30.92■■■□□ 2.54
SMARCB1-202ENST00000344921 NLRP1Q9C000 1473 aa30.91■■■□□ 2.54
SMARCB1-202ENST00000344921 A2ML1A8K2U0 1454 aa30.89■■■□□ 2.54
SMARCB1-202ENST00000344921 NOS1P29475 1434 aa30.88■■■□□ 2.53
SMARCB1-202ENST00000344921 ZNF142P52746 1687 aaPredicted RBP30.88■■■□□ 2.53
SMARCB1-202ENST00000344921 PKD2Q13563 968 aa30.88■■■□□ 2.53
SMARCB1-202ENST00000344921 SYNMO15061 1565 aa30.84■■■□□ 2.53
SMARCB1-202ENST00000344921 MPHOSPH9Q99550 1183 aa30.84■■■□□ 2.53
SMARCB1-202ENST00000344921 HRCP23327 699 aa30.83■■■□□ 2.53
SMARCB1-202ENST00000344921 STAG3Q9UJ98 1225 aa30.83■■■□□ 2.53
SMARCB1-202ENST00000344921 UGGT1Q9NYU2 1555 aa30.83■■■□□ 2.53
SMARCB1-202ENST00000344921 IDI1Q13907 227 aa30.82■■■□□ 2.52
SMARCB1-202ENST00000344921 SLC52A1Q9NWF4 448 aa30.82■■■□□ 2.52
SMARCB1-202ENST00000344921 THEMISQ8N1K5 641 aaPredicted RBP30.81■■■□□ 2.52
SMARCB1-202ENST00000344921 SPHKAPQ2M3C7 1700 aa30.78■■■□□ 2.52
SMARCB1-202ENST00000344921 FOXD1Q16676 465 aa30.78■■■□□ 2.52
SMARCB1-202ENST00000344921 PIK3C2BO00750 1634 aa30.77■■■□□ 2.52
SMARCB1-202ENST00000344921 CHGAP10645 457 aaKnown RBP30.73■■■□□ 2.51
SMARCB1-202ENST00000344921 UBR1Q8IWV7 1749 aa30.73■■■□□ 2.51
SMARCB1-202ENST00000344921 PTPRTO14522 1441 aa30.73■■■□□ 2.51
SMARCB1-202ENST00000344921 PLA2R1Q13018 1463 aa30.69■■■□□ 2.5
SMARCB1-202ENST00000344921 NCKAP5LQ9HCH0 1330 aa30.68■■■□□ 2.5
SMARCB1-202ENST00000344921 TRPM2O94759 1503 aa30.68■■■□□ 2.5
SMARCB1-202ENST00000344921 STRCQ7RTU9 1775 aa30.67■■■□□ 2.5
SMARCB1-202ENST00000344921 ADGRB3O60242 1522 aa30.66■■■□□ 2.5
SMARCB1-202ENST00000344921 ANKLE2Q86XL3 938 aa30.66■■■□□ 2.5
SMARCB1-202ENST00000344921 KDM5AP29375 1690 aaKnown RBP30.65■■■□□ 2.5
SMARCB1-202ENST00000344921 PCGF6Q9BYE7 350 aa30.63■■■□□ 2.49
SMARCB1-202ENST00000344921 DMRT2Q9Y5R5 561 aa30.63■■■□□ 2.49
SMARCB1-202ENST00000344921 CLTCL1P53675 1640 aa30.61■■■□□ 2.49
SMARCB1-202ENST00000344921 TMEM131LA2VDJ0 1609 aa30.6■■■□□ 2.49
SMARCB1-202ENST00000344921 MYO5BQ9ULV0 1848 aa30.6■■■□□ 2.49
SMARCB1-202ENST00000344921 EID1Q9Y6B2 187 aa30.6■■■□□ 2.49
SMARCB1-202ENST00000344921 TMEM2Q9UHN6 1383 aa30.6■■■□□ 2.49
SMARCB1-202ENST00000344921 TXNDC2Q86VQ3 553 aa30.59■■■□□ 2.49
SMARCB1-202ENST00000344921 POLR1AO95602 1720 aaPredicted RBP30.58■■■□□ 2.49
SMARCB1-202ENST00000344921 CCDC144AA2RUR9 1427 aa30.58■■■□□ 2.49
SMARCB1-202ENST00000344921 SLIT1O75093 1534 aa30.57■■■□□ 2.48
SMARCB1-202ENST00000344921 ZNF326Q5BKZ1 582 aaKnown RBP30.56■■■□□ 2.48
SMARCB1-202ENST00000344921 KIF1BO60333 1816 aa30.55■■■□□ 2.48
SMARCB1-202ENST00000344921 ARHGAP23Q9P227 1491 aa30.55■■■□□ 2.48
SMARCB1-202ENST00000344921 LTKP29376 864 aa30.53■■■□□ 2.48
SMARCB1-202ENST00000344921 HDGFP51858 240 aaKnown RBP30.53■■■□□ 2.48
SMARCB1-202ENST00000344921 SCAF11Q99590 1463 aaKnown RBP30.53■■■□□ 2.48
SMARCB1-202ENST00000344921 PPP1R15AO75807 674 aaPredicted RBP30.5■■■□□ 2.47
SMARCB1-202ENST00000344921 RIMS2Q9UQ26 1411 aa30.49■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms