RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 HECW2Q9P2P5 1572 aa19.14■□□□□ 0.65
HMGB1-202ENST00000339872 EIF2AK4Q9P2K8 1649 aaKnown RBP19.14■□□□□ 0.65
HMGB1-202ENST00000339872 FAM69CQ0P6D2 419 aa19.11■□□□□ 0.65
HMGB1-202ENST00000339872 DHX29Q7Z478 1369 aaKnown RBP19.1■□□□□ 0.65
HMGB1-202ENST00000339872 MLH3Q9UHC1 1453 aa19.1■□□□□ 0.65
HMGB1-202ENST00000339872 TSPOAP1O95153 1857 aa19.1■□□□□ 0.65
HMGB1-202ENST00000339872 RICTORQ6R327 1708 aa19.09■□□□□ 0.65
HMGB1-202ENST00000339872 ABCA6Q8N139 1617 aa19.07■□□□□ 0.64
HMGB1-202ENST00000339872 A2MP01023 1474 aa19.07■□□□□ 0.64
HMGB1-202ENST00000339872 KIF3BO15066 747 aa19.06■□□□□ 0.64
HMGB1-202ENST00000339872 RAPGEF3O95398 923 aa19.06■□□□□ 0.64
HMGB1-202ENST00000339872 PPRC1Q5VV67 1664 aaKnown RBP19.06■□□□□ 0.64
HMGB1-202ENST00000339872 PRDM15P57071 1507 aaPredicted RBP19.06■□□□□ 0.64
HMGB1-202ENST00000339872 MROH1Q8NDA8 1641 aa19.06■□□□□ 0.64
HMGB1-202ENST00000339872 E9PCH4 1651 aa19.06■□□□□ 0.64
HMGB1-202ENST00000339872 CCDC144AA2RUR9 1427 aa19.05■□□□□ 0.64
HMGB1-202ENST00000339872 TET3O43151 1660 aa19.04■□□□□ 0.64
HMGB1-202ENST00000339872 VWDEQ8N2E2 1590 aa19.04■□□□□ 0.64
HMGB1-202ENST00000339872 KANK1Q14678 1352 aa19.04■□□□□ 0.64
HMGB1-202ENST00000339872 KIF13AQ9H1H9 1805 aa19.04■□□□□ 0.64
HMGB1-202ENST00000339872 PLA2R1Q13018 1463 aa19.04■□□□□ 0.64
HMGB1-202ENST00000339872 FRMPD1Q5SYB0 1578 aa19.04■□□□□ 0.64
HMGB1-202ENST00000339872 HIRIP3Q9BW71 556 aaPredicted RBP19.03■□□□□ 0.64
HMGB1-202ENST00000339872 NBPF8Q3BBV2 869 aa19.02■□□□□ 0.64
HMGB1-202ENST00000339872 RNF17Q9BXT8 1623 aaKnown RBP19.02■□□□□ 0.64
HMGB1-202ENST00000339872 DIP2CQ9Y2E4 1556 aa19.01■□□□□ 0.63
HMGB1-202ENST00000339872 ATP10AO60312 1499 aa19■□□□□ 0.63
HMGB1-202ENST00000339872 SPHKAPQ2M3C7 1700 aa18.99■□□□□ 0.63
HMGB1-202ENST00000339872 BCORL1Q5H9F3 1711 aa18.99■□□□□ 0.63
HMGB1-202ENST00000339872 CEP152O94986 1710 aa18.98■□□□□ 0.63
HMGB1-202ENST00000339872 ZNF326Q5BKZ1 582 aaKnown RBP18.96■□□□□ 0.63
HMGB1-202ENST00000339872 TRPM2O94759 1503 aa18.95■□□□□ 0.62
HMGB1-202ENST00000339872 ZMYM4Q5VZL5 1548 aa18.95■□□□□ 0.62
HMGB1-202ENST00000339872 MIER1Q8N108 512 aa18.95■□□□□ 0.62
HMGB1-202ENST00000339872 EFCAB6Q5THR3 1501 aa18.94■□□□□ 0.62
HMGB1-202ENST00000339872 UHRF1BP1Q6BDS2 1440 aa18.94■□□□□ 0.62
HMGB1-202ENST00000339872 YEATS2Q9ULM3 1422 aa18.94■□□□□ 0.62
HMGB1-202ENST00000339872 HSPA5P11021 654 aaKnown RBP18.94■□□□□ 0.62
HMGB1-202ENST00000339872 EIF4G2P78344 907 aaKnown RBP eCLIP18.94■□□□□ 0.62
HMGB1-202ENST00000339872 LMTK2Q8IWU2 1503 aa18.93■□□□□ 0.62
HMGB1-202ENST00000339872 DCAF11Q8TEB1 546 aa18.92■□□□□ 0.62
HMGB1-202ENST00000339872 PTPRTO14522 1441 aa18.92■□□□□ 0.62
HMGB1-202ENST00000339872 KDM2AQ9Y2K7 1162 aa18.91■□□□□ 0.62
HMGB1-202ENST00000339872 CLTCL1P53675 1640 aa18.91■□□□□ 0.62
HMGB1-202ENST00000339872 RGL3Q3MIN7 710 aa18.9■□□□□ 0.62
HMGB1-202ENST00000339872 GGT6Q6P531 493 aa18.9■□□□□ 0.62
HMGB1-202ENST00000339872 RALGAPBQ86X10 1494 aa18.89■□□□□ 0.62
HMGB1-202ENST00000339872 DDX10Q13206 875 aaKnown RBP18.88■□□□□ 0.61
HMGB1-202ENST00000339872 ABCC3O15438 1527 aa18.86■□□□□ 0.61
HMGB1-202ENST00000339872 SPATA31E1Q6ZUB1 1445 aa18.86■□□□□ 0.61
HMGB1-202ENST00000339872 CAMSAP1Q5T5Y3 1602 aa18.85■□□□□ 0.61
HMGB1-202ENST00000339872 PRAG1Q86YV5 1406 aa18.85■□□□□ 0.61
HMGB1-202ENST00000339872 TRPM1Q7Z4N2 1603 aa18.85■□□□□ 0.61
HMGB1-202ENST00000339872 ZC3H13Q5T200 1668 aaKnown RBP18.83■□□□□ 0.61
HMGB1-202ENST00000339872 WASHC2CQ9Y4E1 1318 aa18.83■□□□□ 0.61
HMGB1-202ENST00000339872 UGGT1Q9NYU2 1555 aa18.83■□□□□ 0.61
HMGB1-202ENST00000339872 CFAP65Q6ZU64 1925 aaKnown RBP18.82■□□□□ 0.6
HMGB1-202ENST00000339872 NPATQ14207 1427 aa18.82■□□□□ 0.6
HMGB1-202ENST00000339872 USP47Q96K76 1375 aa18.82■□□□□ 0.6
HMGB1-202ENST00000339872 POLR1AO95602 1720 aaPredicted RBP18.82■□□□□ 0.6
HMGB1-202ENST00000339872 KIF1BO60333 1816 aa18.82■□□□□ 0.6
HMGB1-202ENST00000339872 COL17A1Q9UMD9 1497 aaPredicted RBP18.81■□□□□ 0.6
HMGB1-202ENST00000339872 REREQ9P2R6 1566 aa18.8■□□□□ 0.6
HMGB1-202ENST00000339872 CARD11Q9BXL7 1154 aa18.79■□□□□ 0.6
HMGB1-202ENST00000339872 WASHC2AQ641Q2 1341 aa18.79■□□□□ 0.6
HMGB1-202ENST00000339872 ROCK2O75116 1388 aaKnown RBP18.79■□□□□ 0.6
HMGB1-202ENST00000339872 ARHGEF40Q8TER5 1519 aa18.78■□□□□ 0.6
HMGB1-202ENST00000339872 NEURL4Q96JN8 1562 aa18.78■□□□□ 0.6
HMGB1-202ENST00000339872 MROH2AA6NES4 1674 aa18.77■□□□□ 0.6
HMGB1-202ENST00000339872 SIGLEC1Q9BZZ2 1709 aa18.77■□□□□ 0.6
HMGB1-202ENST00000339872 MADDQ8WXG6 1647 aa18.76■□□□□ 0.59
HMGB1-202ENST00000339872 CNTLNQ9NXG0 1405 aa18.75■□□□□ 0.59
HMGB1-202ENST00000339872 AGLP35573 1532 aa18.75■□□□□ 0.59
HMGB1-202ENST00000339872 CCDC7Q96M83 1385 aa18.74■□□□□ 0.59
HMGB1-202ENST00000339872 C11orf95C9JLR9 678 aaPredicted RBP18.74■□□□□ 0.59
HMGB1-202ENST00000339872 LAMC1P11047 1609 aa18.74■□□□□ 0.59
HMGB1-202ENST00000339872 IFT172Q9UG01 1749 aa18.72■□□□□ 0.59
HMGB1-202ENST00000339872 ADGRB3O60242 1522 aa18.72■□□□□ 0.59
HMGB1-202ENST00000339872 ARHGAP31Q2M1Z3 1444 aa18.72■□□□□ 0.59
HMGB1-202ENST00000339872 NOS1P29475 1434 aa18.71■□□□□ 0.59
HMGB1-202ENST00000339872 GPRASP1Q5JY77 1395 aa18.71■□□□□ 0.59
HMGB1-202ENST00000339872 SYNMO15061 1565 aa18.71■□□□□ 0.59
HMGB1-202ENST00000339872 NBPF1Q3BBV0 1214 aa18.71■□□□□ 0.58
HMGB1-202ENST00000339872 KIF7Q2M1P5 1343 aa18.7■□□□□ 0.58
HMGB1-202ENST00000339872 PIK3C2BO00750 1634 aa18.69■□□□□ 0.58
HMGB1-202ENST00000339872 STAC3Q96MF2 364 aa18.69■□□□□ 0.58
HMGB1-202ENST00000339872 PREX1Q8TCU6 1659 aa18.69■□□□□ 0.58
HMGB1-202ENST00000339872 YTHDC1Q96MU7 727 aaKnown RBP18.68■□□□□ 0.58
HMGB1-202ENST00000339872 CLTCQ00610 1675 aaKnown RBP18.68■□□□□ 0.58
HMGB1-202ENST00000339872 CHGAP10645 457 aaKnown RBP18.67■□□□□ 0.58
HMGB1-202ENST00000339872 MYOM2P54296 1465 aa18.67■□□□□ 0.58
HMGB1-202ENST00000339872 ST20-MTHFSA0A0A6YYL1 179 aa18.67■□□□□ 0.58
HMGB1-202ENST00000339872 ANP32CO43423 234 aa18.66■□□□□ 0.58
HMGB1-202ENST00000339872 KIAA1210Q9ULL0 1709 aa18.65■□□□□ 0.58
HMGB1-202ENST00000339872 PPLO60437 1756 aa18.65■□□□□ 0.58
HMGB1-202ENST00000339872 TRHP20396 242 aaPredicted RBP18.64■□□□□ 0.57
HMGB1-202ENST00000339872 MLECQ14165 292 aa18.63■□□□□ 0.57
HMGB1-202ENST00000339872 IQGAP1P46940 1657 aa18.63■□□□□ 0.57
HMGB1-202ENST00000339872 PPP6R1Q9UPN7 881 aa18.62■□□□□ 0.57
HMGB1-202ENST00000339872 POLR3GLQ9BT43 218 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms