RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 BCORL1Q5H9F3 1711 aa33.1■■■□□ 2.89
SDC3-202ENST00000339394 PPP6R1Q9UPN7 881 aa33.05■■■□□ 2.88
SDC3-202ENST00000339394 RNF17Q9BXT8 1623 aaKnown RBP33.05■■■□□ 2.88
SDC3-202ENST00000339394 HRCP23327 699 aa33.03■■■□□ 2.88
SDC3-202ENST00000339394 MROH1Q8NDA8 1641 aa33.02■■■□□ 2.88
SDC3-202ENST00000339394 NUP155O75694 1391 aa33.01■■■□□ 2.88
SDC3-202ENST00000339394 WASHC2CQ9Y4E1 1318 aa33.01■■■□□ 2.88
SDC3-202ENST00000339394 TRIM52Q96A61 297 aa33.01■■■□□ 2.88
SDC3-202ENST00000339394 DEPDC5O75140 1603 aa33.01■■■□□ 2.87
SDC3-202ENST00000339394 PRDM15P57071 1507 aaPredicted RBP32.99■■■□□ 2.87
SDC3-202ENST00000339394 KANK1Q14678 1352 aa32.99■■■□□ 2.87
SDC3-202ENST00000339394 ESF1Q9H501 851 aaKnown RBP32.98■■■□□ 2.87
SDC3-202ENST00000339394 UNC13BO14795 1591 aa32.97■■■□□ 2.87
SDC3-202ENST00000339394 ACIN1Q9UKV3 1341 aaKnown RBP32.96■■■□□ 2.87
SDC3-202ENST00000339394 VWDEQ8N2E2 1590 aa32.92■■■□□ 2.86
SDC3-202ENST00000339394 KDM4FA0A1W2PPD8 638 aa32.92■■■□□ 2.86
SDC3-202ENST00000339394 KDM5DQ9BY66 1539 aa32.91■■■□□ 2.86
SDC3-202ENST00000339394 ADAMTSL3P82987 1691 aa32.91■■■□□ 2.86
SDC3-202ENST00000339394 ABCC3O15438 1527 aa32.9■■■□□ 2.86
SDC3-202ENST00000339394 CNTLNQ9NXG0 1405 aa32.89■■■□□ 2.86
SDC3-202ENST00000339394 FAM135AQ9P2D6 1515 aa32.89■■■□□ 2.86
SDC3-202ENST00000339394 MADDQ8WXG6 1647 aa32.87■■■□□ 2.85
SDC3-202ENST00000339394 LMTK2Q8IWU2 1503 aa32.85■■■□□ 2.85
SDC3-202ENST00000339394 SLC4A1APQ9BWU0 796 aaKnown RBP32.85■■■□□ 2.85
SDC3-202ENST00000339394 ZMYM3Q14202 1370 aa32.85■■■□□ 2.85
SDC3-202ENST00000339394 IQGAP3Q86VI3 1631 aa32.84■■■□□ 2.85
SDC3-202ENST00000339394 PZPP20742 1482 aa32.84■■■□□ 2.85
SDC3-202ENST00000339394 MPHOSPH9Q99550 1183 aa32.83■■■□□ 2.85
SDC3-202ENST00000339394 FER1L4A9Z1Z3 1794 aa32.82■■■□□ 2.84
SDC3-202ENST00000339394 CLTCQ00610 1675 aaKnown RBP32.81■■■□□ 2.84
SDC3-202ENST00000339394 ZC3H13Q5T200 1668 aaKnown RBP32.81■■■□□ 2.84
SDC3-202ENST00000339394 CEBPAP49715 358 aaPredicted RBP32.79■■■□□ 2.84
SDC3-202ENST00000339394 CEP152O94986 1710 aa32.78■■■□□ 2.84
SDC3-202ENST00000339394 PKD2Q13563 968 aa32.76■■■□□ 2.84
SDC3-202ENST00000339394 ARHGAP31Q2M1Z3 1444 aa32.76■■■□□ 2.83
SDC3-202ENST00000339394 RIMS1Q86UR5 1692 aaKnown RBP32.76■■■□□ 2.83
SDC3-202ENST00000339394 NPATQ14207 1427 aa32.75■■■□□ 2.83
SDC3-202ENST00000339394 PLPPR3Q6T4P5 718 aa32.75■■■□□ 2.83
SDC3-202ENST00000339394 EFCAB6Q5THR3 1501 aa32.74■■■□□ 2.83
SDC3-202ENST00000339394 PTPRMP28827 1452 aa32.74■■■□□ 2.83
SDC3-202ENST00000339394 CAMSAP1Q5T5Y3 1602 aa32.73■■■□□ 2.83
SDC3-202ENST00000339394 TET3O43151 1660 aa32.73■■■□□ 2.83
SDC3-202ENST00000339394 MROH2AA6NES4 1674 aa32.71■■■□□ 2.83
SDC3-202ENST00000339394 FBXO31Q5XUX0 539 aaPredicted RBP32.71■■■□□ 2.83
SDC3-202ENST00000339394 FOXD1Q16676 465 aa32.7■■■□□ 2.82
SDC3-202ENST00000339394 RPRD2Q5VT52 1461 aaKnown RBP32.68■■■□□ 2.82
SDC3-202ENST00000339394 C3P01024 1663 aa32.65■■■□□ 2.82
SDC3-202ENST00000339394 E9PCH4 1651 aa32.63■■■□□ 2.81
SDC3-202ENST00000339394 DHX57Q6P158 1386 aaKnown RBP32.63■■■□□ 2.81
SDC3-202ENST00000339394 ERVK-7P63135 1459 aa32.6■■■□□ 2.81
SDC3-202ENST00000339394 NOS1P29475 1434 aa32.59■■■□□ 2.81
SDC3-202ENST00000339394 PTPRTO14522 1441 aa32.57■■■□□ 2.8
SDC3-202ENST00000339394 SPATA31D1Q6ZQQ2 1576 aa32.56■■■□□ 2.8
SDC3-202ENST00000339394 TNRQ92752 1358 aa32.55■■■□□ 2.8
SDC3-202ENST00000339394 PLA2R1Q13018 1463 aa32.55■■■□□ 2.8
SDC3-202ENST00000339394 PREX1Q8TCU6 1659 aa32.52■■■□□ 2.8
SDC3-202ENST00000339394 ANKRD30BQ9BXX2 1392 aa32.5■■■□□ 2.79
SDC3-202ENST00000339394 CFAP65Q6ZU64 1925 aaKnown RBP32.5■■■□□ 2.79
SDC3-202ENST00000339394 SLC52A1Q9NWF4 448 aa32.49■■■□□ 2.79
SDC3-202ENST00000339394 SYNMO15061 1565 aa32.47■■■□□ 2.79
SDC3-202ENST00000339394 IDI1Q13907 227 aa32.47■■■□□ 2.79
SDC3-202ENST00000339394 TRPM2O94759 1503 aa32.45■■■□□ 2.79
SDC3-202ENST00000339394 SPHKAPQ2M3C7 1700 aa32.43■■■□□ 2.78
SDC3-202ENST00000339394 UGGT1Q9NYU2 1555 aa32.42■■■□□ 2.78
SDC3-202ENST00000339394 CCDC144AA2RUR9 1427 aa32.41■■■□□ 2.78
SDC3-202ENST00000339394 NLRP1Q9C000 1473 aa32.4■■■□□ 2.78
SDC3-202ENST00000339394 CCER1Q8TC90 406 aaPredicted RBP32.4■■■□□ 2.78
SDC3-202ENST00000339394 UHRF1BP1Q6BDS2 1440 aa32.36■■■□□ 2.77
SDC3-202ENST00000339394 SETD1BQ9UPS6 1966 aaKnown RBP32.36■■■□□ 2.77
SDC3-202ENST00000339394 PIK3C2BO00750 1634 aa32.34■■■□□ 2.77
SDC3-202ENST00000339394 CLTCL1P53675 1640 aa32.33■■■□□ 2.77
SDC3-202ENST00000339394 MYO3AQ8NEV4 1616 aa32.33■■■□□ 2.77
SDC3-202ENST00000339394 SIN3AQ96ST3 1273 aa32.32■■■□□ 2.77
SDC3-202ENST00000339394 STAG3Q9UJ98 1225 aa32.32■■■□□ 2.77
SDC3-202ENST00000339394 CHGAP10645 457 aaKnown RBP32.32■■■□□ 2.76
SDC3-202ENST00000339394 A2ML1A8K2U0 1454 aa32.31■■■□□ 2.76
SDC3-202ENST00000339394 AEBP2Q6ZN18 517 aaPredicted RBP32.3■■■□□ 2.76
SDC3-202ENST00000339394 CLSPNQ9HAW4 1339 aa32.29■■■□□ 2.76
SDC3-202ENST00000339394 CEP170BQ9Y4F5 1589 aaPredicted RBP32.28■■■□□ 2.76
SDC3-202ENST00000339394 NEUROD1Q13562 356 aa32.26■■■□□ 2.75
SDC3-202ENST00000339394 THEMISQ8N1K5 641 aaPredicted RBP32.25■■■□□ 2.75
SDC3-202ENST00000339394 LMTK3Q96Q04 1460 aa32.23■■■□□ 2.75
SDC3-202ENST00000339394 ADGRB3O60242 1522 aa32.22■■■□□ 2.75
SDC3-202ENST00000339394 SPATA31E1Q6ZUB1 1445 aa32.22■■■□□ 2.75
SDC3-202ENST00000339394 RGL3Q3MIN7 710 aa32.21■■■□□ 2.75
SDC3-202ENST00000339394 TMEM131LA2VDJ0 1609 aa32.21■■■□□ 2.75
SDC3-202ENST00000339394 ZNF142P52746 1687 aaPredicted RBP32.2■■■□□ 2.75
SDC3-202ENST00000339394 ZNF326Q5BKZ1 582 aaKnown RBP32.19■■■□□ 2.74
SDC3-202ENST00000339394 UBR1Q8IWV7 1749 aa32.18■■■□□ 2.74
SDC3-202ENST00000339394 HSPA2P54652 639 aa32.17■■■□□ 2.74
SDC3-202ENST00000339394 KDM5AP29375 1690 aaKnown RBP32.15■■■□□ 2.74
SDC3-202ENST00000339394 TMEM2Q9UHN6 1383 aa32.15■■■□□ 2.74
SDC3-202ENST00000339394 KIF1BO60333 1816 aa32.13■■■□□ 2.73
SDC3-202ENST00000339394 NEURL4Q96JN8 1562 aa32.12■■■□□ 2.73
SDC3-202ENST00000339394 RPGRIP1LQ68CZ1 1315 aa32.1■■■□□ 2.73
SDC3-202ENST00000339394 ARHGAP23Q9P227 1491 aa32.08■■■□□ 2.73
SDC3-202ENST00000339394 SLIT1O75093 1534 aa32.08■■■□□ 2.73
SDC3-202ENST00000339394 RIMS2Q9UQ26 1411 aa32.08■■■□□ 2.73
SDC3-202ENST00000339394 LTKP29376 864 aa32.07■■■□□ 2.72
SDC3-202ENST00000339394 ZFYVE9O95405 1425 aa32.07■■■□□ 2.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms