RNA–Protein interactions for RNA: ENST00000338368.7

PRKDC-202, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PRKDC, Length 12,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-202ENST00000338368 C9orf84Q5VXU9 1444 aa8.16□□□□□ -1.1
PRKDC-202ENST00000338368 PTPRKQ15262 1439 aa8.16□□□□□ -1.1
PRKDC-202ENST00000338368 ZBED9Q6R2W3 1325 aa8.16□□□□□ -1.1
PRKDC-202ENST00000338368 TERF2IPQ9NYB0 399 aa8.16□□□□□ -1.1
PRKDC-202ENST00000338368 ANKRD30BQ9BXX2 1392 aa8.16□□□□□ -1.1
PRKDC-202ENST00000338368 CFAP70Q5T0N1 1121 aa8.15□□□□□ -1.1
PRKDC-202ENST00000338368 HECW1Q76N89 1606 aa8.15□□□□□ -1.1
PRKDC-202ENST00000338368 NBR1Q14596 966 aa8.15□□□□□ -1.11
PRKDC-202ENST00000338368 MAGI1Q96QZ7 1491 aaPredicted RBP8.14□□□□□ -1.11
PRKDC-202ENST00000338368 SOX12O15370 315 aa8.14□□□□□ -1.11
PRKDC-202ENST00000338368 CCDC146Q8IYE0 955 aa8.14□□□□□ -1.11
PRKDC-202ENST00000338368 MYH16Q9H6N6 1097 aa8.14□□□□□ -1.11
PRKDC-202ENST00000338368 CUL7Q14999 1698 aa8.14□□□□□ -1.11
PRKDC-202ENST00000338368 NCOA1Q15788 1441 aa8.14□□□□□ -1.11
PRKDC-202ENST00000338368 C11orf95C9JLR9 678 aaPredicted RBP8.14□□□□□ -1.11
PRKDC-202ENST00000338368 MS4A1P11836 297 aa8.14□□□□□ -1.11
PRKDC-202ENST00000338368 FAM69CQ0P6D2 419 aa8.14□□□□□ -1.11
PRKDC-202ENST00000338368 CCDC184Q52MB2 194 aa8.14□□□□□ -1.11
PRKDC-202ENST00000338368 ARHGAP5Q13017 1502 aa8.13□□□□□ -1.11
PRKDC-202ENST00000338368 AKNAQ7Z591 1439 aa8.13□□□□□ -1.11
PRKDC-202ENST00000338368 ANP32EQ9BTT0 268 aa8.13□□□□□ -1.11
PRKDC-202ENST00000338368 SCAPERQ9BY12 1400 aa8.13□□□□□ -1.11
PRKDC-202ENST00000338368 ARHGEF11O15085 1522 aa8.12□□□□□ -1.11
PRKDC-202ENST00000338368 PLEKHH2Q8IVE3 1493 aa8.12□□□□□ -1.11
PRKDC-202ENST00000338368 HSP90AA1P07900 732 aaKnown RBP8.12□□□□□ -1.11
PRKDC-202ENST00000338368 DDRGK1Q96HY6 314 aa8.12□□□□□ -1.11
PRKDC-202ENST00000338368 CENPJQ9HC77 1338 aaPredicted RBP8.12□□□□□ -1.11
PRKDC-202ENST00000338368 APAF1O14727 1248 aa8.12□□□□□ -1.11
PRKDC-202ENST00000338368 TMEM132EQ6IEE7 984 aa8.12□□□□□ -1.11
PRKDC-202ENST00000338368 LMOD2Q6P5Q4 547 aa8.11□□□□□ -1.11
PRKDC-202ENST00000338368 EVC2Q86UK5 1308 aa8.11□□□□□ -1.11
PRKDC-202ENST00000338368 RAPGEF3O95398 923 aa8.11□□□□□ -1.11
PRKDC-202ENST00000338368 UNC13AQ9UPW8 1703 aa8.1□□□□□ -1.11
PRKDC-202ENST00000338368 MINK1Q8N4C8 1332 aaPredicted RBP8.1□□□□□ -1.11
PRKDC-202ENST00000338368 WDR97A6NE52 1622 aa8.09□□□□□ -1.11
PRKDC-202ENST00000338368 TCERG1O14776 1098 aaKnown RBP8.09□□□□□ -1.11
PRKDC-202ENST00000338368 EXOC6Q8TAG9 804 aa8.09□□□□□ -1.11
PRKDC-202ENST00000338368 CAMSAP2Q08AD1 1489 aa8.09□□□□□ -1.12
PRKDC-202ENST00000338368 CHMP4BQ9H444 224 aaKnown RBP8.09□□□□□ -1.12
PRKDC-202ENST00000338368 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.08□□□□□ -1.12
PRKDC-202ENST00000338368 RPRD2Q5VT52 1461 aaKnown RBP8.08□□□□□ -1.12
PRKDC-202ENST00000338368 NUTM2FA1L443 756 aa8.08□□□□□ -1.12
PRKDC-202ENST00000338368 PLIN1O60240 522 aa8.08□□□□□ -1.12
PRKDC-202ENST00000338368 RRP1P56182 461 aaKnown RBP8.08□□□□□ -1.12
PRKDC-202ENST00000338368 BRD4O60885 1362 aaPredicted RBP8.08□□□□□ -1.12
PRKDC-202ENST00000338368 CGNL1Q0VF96 1302 aa8.08□□□□□ -1.12
PRKDC-202ENST00000338368 EID1Q9Y6B2 187 aa8.08□□□□□ -1.12
PRKDC-202ENST00000338368 CLUAP1Q96AJ1 413 aa8.08□□□□□ -1.12
PRKDC-202ENST00000338368 RRP7AQ9Y3A4 280 aaKnown RBP8.08□□□□□ -1.12
PRKDC-202ENST00000338368 PNISRQ8TF01 805 aaKnown RBP8.08□□□□□ -1.12
PRKDC-202ENST00000338368 CCDC141Q6ZP82 1450 aa8.08□□□□□ -1.12
PRKDC-202ENST00000338368 NOP58Q9Y2X3 529 aaKnown RBP8.07□□□□□ -1.12
PRKDC-202ENST00000338368 NUP153P49790 1475 aaKnown RBP8.07□□□□□ -1.12
PRKDC-202ENST00000338368 GPATCH8Q9UKJ3 1502 aaKnown RBP8.07□□□□□ -1.12
PRKDC-202ENST00000338368 HAP1P54257 671 aaPredicted RBP8.07□□□□□ -1.12
PRKDC-202ENST00000338368 BECN1Q14457 450 aa8.07□□□□□ -1.12
PRKDC-202ENST00000338368 E9PSI1 815 aa8.07□□□□□ -1.12
PRKDC-202ENST00000338368 ATP10BO94823 1461 aa8.07□□□□□ -1.12
PRKDC-202ENST00000338368 PRDM2Q13029 1718 aa8.07□□□□□ -1.12
PRKDC-202ENST00000338368 NGEFQ8N5V2 710 aa8.07□□□□□ -1.12
PRKDC-202ENST00000338368 IPO8O15397 1037 aaKnown RBP8.06□□□□□ -1.12
PRKDC-202ENST00000338368 NGDNQ8NEJ9 315 aaKnown RBP8.06□□□□□ -1.12
PRKDC-202ENST00000338368 SMC4Q9NTJ3 1288 aa8.06□□□□□ -1.12
PRKDC-202ENST00000338368 MAPKBP1O60336 1514 aa8.06□□□□□ -1.12
PRKDC-202ENST00000338368 SUPT6HQ7KZ85 1726 aaKnown RBP8.06□□□□□ -1.12
PRKDC-202ENST00000338368 CALD1Q05682 793 aaKnown RBP8.06□□□□□ -1.12
PRKDC-202ENST00000338368 RWDD1Q9H446 243 aaPredicted RBP8.05□□□□□ -1.12
PRKDC-202ENST00000338368 ADAMTS8Q9UP79 889 aa8.05□□□□□ -1.12
PRKDC-202ENST00000338368 RTF1Q92541 710 aaKnown RBP8.05□□□□□ -1.12
PRKDC-202ENST00000338368 UGGT2Q9NYU1 1516 aa8.05□□□□□ -1.12
PRKDC-202ENST00000338368 PPP2R1AP30153 589 aa8.05□□□□□ -1.12
PRKDC-202ENST00000338368 GGNBP2Q9H3C7 697 aa8.04□□□□□ -1.12
PRKDC-202ENST00000338368 CDCA7LQ96GN5 454 aa8.04□□□□□ -1.12
PRKDC-202ENST00000338368 PAK3O75914 559 aaPredicted RBP8.04□□□□□ -1.12
PRKDC-202ENST00000338368 SLC12A5Q9H2X9 1139 aa8.04□□□□□ -1.12
PRKDC-202ENST00000338368 PTPN23Q9H3S7 1636 aa8.04□□□□□ -1.12
PRKDC-202ENST00000338368 PMFBP1Q8TBY8 1022 aa8.04□□□□□ -1.12
PRKDC-202ENST00000338368 DIAPH1O60610 1272 aaKnown RBP8.04□□□□□ -1.12
PRKDC-202ENST00000338368 CRBNQ96SW2 442 aa8.03□□□□□ -1.12
PRKDC-202ENST00000338368 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.03□□□□□ -1.12
PRKDC-202ENST00000338368 THOC2Q8NI27 1593 aaKnown RBP8.03□□□□□ -1.12
PRKDC-202ENST00000338368 SLC52A1Q9NWF4 448 aa8.03□□□□□ -1.12
PRKDC-202ENST00000338368 CABP2Q9NPB3 220 aa8.03□□□□□ -1.12
PRKDC-202ENST00000338368 BCL2L13Q9BXK5 485 aa8.03□□□□□ -1.12
PRKDC-202ENST00000338368 TCOF1Q13428 1488 aaKnown RBP8.03□□□□□ -1.12
PRKDC-202ENST00000338368 MTHFSP49914 203 aa8.03□□□□□ -1.12
PRKDC-202ENST00000338368 ITPRIPQ8IWB1 547 aa8.03□□□□□ -1.12
PRKDC-202ENST00000338368 RUNDC1Q96C34 613 aa8.02□□□□□ -1.13
PRKDC-202ENST00000338368 ELL2O00472 640 aaPredicted RBP8.02□□□□□ -1.13
PRKDC-202ENST00000338368 ERBINQ96RT1 1412 aa8.01□□□□□ -1.13
PRKDC-202ENST00000338368 COG6Q9Y2V7 657 aa8.01□□□□□ -1.13
PRKDC-202ENST00000338368 COG3Q96JB2 828 aa8.01□□□□□ -1.13
PRKDC-202ENST00000338368 AMPHP49418 695 aa8.01□□□□□ -1.13
PRKDC-202ENST00000338368 CD109Q6YHK3 1445 aa8□□□□□ -1.13
PRKDC-202ENST00000338368 DISP1Q96F81 1524 aa8□□□□□ -1.13
PRKDC-202ENST00000338368 CENPQQ7L2Z9 268 aaPredicted RBP8□□□□□ -1.13
PRKDC-202ENST00000338368 DHX29Q7Z478 1369 aaKnown RBP8□□□□□ -1.13
PRKDC-202ENST00000338368 PDE4AP27815 886 aa8□□□□□ -1.13
PRKDC-202ENST00000338368 RPGRIP1LQ68CZ1 1315 aa8□□□□□ -1.13
PRKDC-202ENST00000338368 TCP11L2Q8N4U5 519 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms