RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.85■□□□□ 0.45
SPTLC1-202ENST00000337841 WASHC2CQ9Y4E1 1318 aa17.83■□□□□ 0.44
SPTLC1-202ENST00000337841 KANK1Q14678 1352 aa17.8■□□□□ 0.44
SPTLC1-202ENST00000337841 ACIN1Q9UKV3 1341 aaKnown RBP17.79■□□□□ 0.44
SPTLC1-202ENST00000337841 HFM1A2PYH4 1435 aa17.79■□□□□ 0.44
SPTLC1-202ENST00000337841 NAIPQ13075 1403 aa17.79■□□□□ 0.44
SPTLC1-202ENST00000337841 CNTLNQ9NXG0 1405 aa17.77■□□□□ 0.44
SPTLC1-202ENST00000337841 BCORL1Q5H9F3 1711 aa17.77■□□□□ 0.44
SPTLC1-202ENST00000337841 SIGLEC1Q9BZZ2 1709 aa17.76■□□□□ 0.43
SPTLC1-202ENST00000337841 TRIM52Q96A61 297 aa17.76■□□□□ 0.43
SPTLC1-202ENST00000337841 SETD5Q9C0A6 1442 aa17.75■□□□□ 0.43
SPTLC1-202ENST00000337841 EIF2AK4Q9P2K8 1649 aaKnown RBP17.74■□□□□ 0.43
SPTLC1-202ENST00000337841 ZMYM3Q14202 1370 aa17.74■□□□□ 0.43
SPTLC1-202ENST00000337841 CEBPAP49715 358 aaPredicted RBP17.73■□□□□ 0.43
SPTLC1-202ENST00000337841 NUP155O75694 1391 aa17.73■□□□□ 0.43
SPTLC1-202ENST00000337841 ADAMTSL3P82987 1691 aa17.73■□□□□ 0.43
SPTLC1-202ENST00000337841 HRCP23327 699 aa17.72■□□□□ 0.43
SPTLC1-202ENST00000337841 PTPRMP28827 1452 aa17.7■□□□□ 0.42
SPTLC1-202ENST00000337841 MADDQ8WXG6 1647 aa17.69■□□□□ 0.42
SPTLC1-202ENST00000337841 FAM135AQ9P2D6 1515 aa17.68■□□□□ 0.42
SPTLC1-202ENST00000337841 RNF17Q9BXT8 1623 aaKnown RBP17.68■□□□□ 0.42
SPTLC1-202ENST00000337841 KDM5DQ9BY66 1539 aa17.67■□□□□ 0.42
SPTLC1-202ENST00000337841 RAB3GAP2Q9H2M9 1393 aa17.66■□□□□ 0.42
SPTLC1-202ENST00000337841 SLC4A1APQ9BWU0 796 aaKnown RBP17.65■□□□□ 0.42
SPTLC1-202ENST00000337841 ABCC3O15438 1527 aa17.64■□□□□ 0.41
SPTLC1-202ENST00000337841 PRDM15P57071 1507 aaPredicted RBP17.64■□□□□ 0.41
SPTLC1-202ENST00000337841 FBXO31Q5XUX0 539 aaPredicted RBP17.64■□□□□ 0.41
SPTLC1-202ENST00000337841 FER1L4A9Z1Z3 1794 aa17.63■□□□□ 0.41
SPTLC1-202ENST00000337841 PCGF6Q9BYE7 350 aa17.63■□□□□ 0.41
SPTLC1-202ENST00000337841 RIMS1Q86UR5 1692 aaKnown RBP17.63■□□□□ 0.41
SPTLC1-202ENST00000337841 MROH1Q8NDA8 1641 aa17.62■□□□□ 0.41
SPTLC1-202ENST00000337841 GCC2Q8IWJ2 1684 aa17.62■□□□□ 0.41
SPTLC1-202ENST00000337841 ARHGAP31Q2M1Z3 1444 aa17.62■□□□□ 0.41
SPTLC1-202ENST00000337841 DEPDC5O75140 1603 aa17.61■□□□□ 0.41
SPTLC1-202ENST00000337841 MPHOSPH9Q99550 1183 aa17.61■□□□□ 0.41
SPTLC1-202ENST00000337841 LMTK2Q8IWU2 1503 aa17.61■□□□□ 0.41
SPTLC1-202ENST00000337841 CLTCQ00610 1675 aaKnown RBP17.61■□□□□ 0.41
SPTLC1-202ENST00000337841 PKD2Q13563 968 aa17.6■□□□□ 0.41
SPTLC1-202ENST00000337841 UNC13BO14795 1591 aa17.6■□□□□ 0.41
SPTLC1-202ENST00000337841 VWDEQ8N2E2 1590 aa17.6■□□□□ 0.41
SPTLC1-202ENST00000337841 PZPP20742 1482 aa17.59■□□□□ 0.41
SPTLC1-202ENST00000337841 NPATQ14207 1427 aa17.59■□□□□ 0.41
SPTLC1-202ENST00000337841 TNRQ92752 1358 aa17.57■□□□□ 0.4
SPTLC1-202ENST00000337841 MROH2AA6NES4 1674 aa17.57■□□□□ 0.4
SPTLC1-202ENST00000337841 ZC3H13Q5T200 1668 aaKnown RBP17.57■□□□□ 0.4
SPTLC1-202ENST00000337841 PIAS4Q8N2W9 510 aaPredicted RBP17.54■□□□□ 0.4
SPTLC1-202ENST00000337841 SLC52A1Q9NWF4 448 aa17.54■□□□□ 0.4
SPTLC1-202ENST00000337841 RPRD2Q5VT52 1461 aaKnown RBP17.54■□□□□ 0.4
SPTLC1-202ENST00000337841 C3P01024 1663 aa17.53■□□□□ 0.4
SPTLC1-202ENST00000337841 IQGAP3Q86VI3 1631 aa17.53■□□□□ 0.4
SPTLC1-202ENST00000337841 MSH5O43196 834 aa17.52■□□□□ 0.4
SPTLC1-202ENST00000337841 CEP152O94986 1710 aa17.52■□□□□ 0.39
SPTLC1-202ENST00000337841 ERVK-7P63135 1459 aa17.51■□□□□ 0.39
SPTLC1-202ENST00000337841 CAMSAP1Q5T5Y3 1602 aa17.51■□□□□ 0.39
SPTLC1-202ENST00000337841 UHRF1BP1Q6BDS2 1440 aa17.51■□□□□ 0.39
SPTLC1-202ENST00000337841 STAG3Q9UJ98 1225 aa17.51■□□□□ 0.39
SPTLC1-202ENST00000337841 EFCAB6Q5THR3 1501 aa17.51■□□□□ 0.39
SPTLC1-202ENST00000337841 IDI1Q13907 227 aa17.5■□□□□ 0.39
SPTLC1-202ENST00000337841 TET3O43151 1660 aa17.5■□□□□ 0.39
SPTLC1-202ENST00000337841 NOS1P29475 1434 aa17.49■□□□□ 0.39
SPTLC1-202ENST00000337841 THEMISQ8N1K5 641 aaPredicted RBP17.49■□□□□ 0.39
SPTLC1-202ENST00000337841 SETD1BQ9UPS6 1966 aaKnown RBP17.48■□□□□ 0.39
SPTLC1-202ENST00000337841 SPATA31D1Q6ZQQ2 1576 aa17.47■□□□□ 0.39
SPTLC1-202ENST00000337841 NLRP1Q9C000 1473 aa17.46■□□□□ 0.39
SPTLC1-202ENST00000337841 CHGAP10645 457 aaKnown RBP17.46■□□□□ 0.39
SPTLC1-202ENST00000337841 PTPRTO14522 1441 aa17.45■□□□□ 0.38
SPTLC1-202ENST00000337841 HSPA2P54652 639 aa17.44■□□□□ 0.38
SPTLC1-202ENST00000337841 A2ML1A8K2U0 1454 aa17.43■□□□□ 0.38
SPTLC1-202ENST00000337841 HDGFP51858 240 aaKnown RBP17.42■□□□□ 0.38
SPTLC1-202ENST00000337841 E9PCH4 1651 aa17.42■□□□□ 0.38
SPTLC1-202ENST00000337841 PREX1Q8TCU6 1659 aa17.41■□□□□ 0.38
SPTLC1-202ENST00000337841 CFAP65Q6ZU64 1925 aaKnown RBP17.41■□□□□ 0.38
SPTLC1-202ENST00000337841 PLA2R1Q13018 1463 aa17.39■□□□□ 0.37
SPTLC1-202ENST00000337841 LMTK3Q96Q04 1460 aa17.39■□□□□ 0.37
SPTLC1-202ENST00000337841 ANKLE2Q86XL3 938 aa17.39■□□□□ 0.37
SPTLC1-202ENST00000337841 EID1Q9Y6B2 187 aa17.38■□□□□ 0.37
SPTLC1-202ENST00000337841 CCDC144AA2RUR9 1427 aa17.38■□□□□ 0.37
SPTLC1-202ENST00000337841 ZNF326Q5BKZ1 582 aaKnown RBP17.37■□□□□ 0.37
SPTLC1-202ENST00000337841 ANKRD30BQ9BXX2 1392 aa17.37■□□□□ 0.37
SPTLC1-202ENST00000337841 SYNMO15061 1565 aa17.36■□□□□ 0.37
SPTLC1-202ENST00000337841 UGGT1Q9NYU2 1555 aa17.36■□□□□ 0.37
SPTLC1-202ENST00000337841 TXNDC2Q86VQ3 553 aa17.36■□□□□ 0.37
SPTLC1-202ENST00000337841 CEP170BQ9Y4F5 1589 aaPredicted RBP17.36■□□□□ 0.37
SPTLC1-202ENST00000337841 DMRT2Q9Y5R5 561 aa17.35■□□□□ 0.37
SPTLC1-202ENST00000337841 DHX57Q6P158 1386 aaKnown RBP17.35■□□□□ 0.37
SPTLC1-202ENST00000337841 MYO3AQ8NEV4 1616 aa17.35■□□□□ 0.37
SPTLC1-202ENST00000337841 TRPM2O94759 1503 aa17.34■□□□□ 0.37
SPTLC1-202ENST00000337841 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.34■□□□□ 0.37
SPTLC1-202ENST00000337841 NCKAP5LQ9HCH0 1330 aa17.33■□□□□ 0.36
SPTLC1-202ENST00000337841 RGL3Q3MIN7 710 aa17.33■□□□□ 0.36
SPTLC1-202ENST00000337841 TMEM2Q9UHN6 1383 aa17.32■□□□□ 0.36
SPTLC1-202ENST00000337841 RPGRIP1LQ68CZ1 1315 aa17.31■□□□□ 0.36
SPTLC1-202ENST00000337841 SPHKAPQ2M3C7 1700 aa17.3■□□□□ 0.36
SPTLC1-202ENST00000337841 PPP1R15AO75807 674 aaPredicted RBP17.3■□□□□ 0.36
SPTLC1-202ENST00000337841 PIK3C2BO00750 1634 aa17.29■□□□□ 0.36
SPTLC1-202ENST00000337841 LTKP29376 864 aa17.29■□□□□ 0.36
SPTLC1-202ENST00000337841 BCANQ96GW7 911 aa17.29■□□□□ 0.36
SPTLC1-202ENST00000337841 ADGRB3O60242 1522 aa17.28■□□□□ 0.36
SPTLC1-202ENST00000337841 VGFO15240 615 aaPredicted RBP17.28■□□□□ 0.36
SPTLC1-202ENST00000337841 NEUROD1Q13562 356 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms