RNA–Protein interactions for RNA: ENST00000334895.9

TPM1-204, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,637 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-204ENST00000334895 RNF17Q9BXT8 1623 aaKnown RBP31.9■■■□□ 2.7
TPM1-204ENST00000334895 KDM5DQ9BY66 1539 aa31.9■■■□□ 2.7
TPM1-204ENST00000334895 DHX57Q6P158 1386 aaKnown RBP31.9■■■□□ 2.7
TPM1-204ENST00000334895 TRIM52Q96A61 297 aa31.89■■■□□ 2.7
TPM1-204ENST00000334895 AGLP35573 1532 aa31.88■■■□□ 2.69
TPM1-204ENST00000334895 PZPP20742 1482 aa31.87■■■□□ 2.69
TPM1-204ENST00000334895 ACIN1Q9UKV3 1341 aaKnown RBP31.87■■■□□ 2.69
TPM1-204ENST00000334895 PRDM15P57071 1507 aaPredicted RBP31.85■■■□□ 2.69
TPM1-204ENST00000334895 ARID4BQ4LE39 1312 aaPredicted RBP31.85■■■□□ 2.69
TPM1-204ENST00000334895 NUP155O75694 1391 aa31.85■■■□□ 2.69
TPM1-204ENST00000334895 IQGAP3Q86VI3 1631 aa31.83■■■□□ 2.69
TPM1-204ENST00000334895 VWDEQ8N2E2 1590 aa31.82■■■□□ 2.68
TPM1-204ENST00000334895 GRWD1Q9BQ67 446 aaKnown RBP eCLIP31.81■■■□□ 2.681e-6■■■□□ 19
TPM1-204ENST00000334895 FAM135AQ9P2D6 1515 aa31.8■■■□□ 2.68
TPM1-204ENST00000334895 MPHOSPH9Q99550 1183 aa31.78■■■□□ 2.68
TPM1-204ENST00000334895 ADAMTSL3P82987 1691 aa31.77■■■□□ 2.68
TPM1-204ENST00000334895 KDM4FA0A1W2PPD8 638 aa31.76■■■□□ 2.67
TPM1-204ENST00000334895 GGT6Q6P531 493 aa31.75■■■□□ 2.67
TPM1-204ENST00000334895 CCER1Q8TC90 406 aaPredicted RBP31.74■■■□□ 2.67
TPM1-204ENST00000334895 SLC4A1APQ9BWU0 796 aaKnown RBP31.73■■■□□ 2.67
TPM1-204ENST00000334895 MADDQ8WXG6 1647 aa31.73■■■□□ 2.67
TPM1-204ENST00000334895 FER1L4A9Z1Z3 1794 aa31.72■■■□□ 2.67
TPM1-204ENST00000334895 MLECQ14165 292 aa31.71■■■□□ 2.67
TPM1-204ENST00000334895 KANK1Q14678 1352 aa31.71■■■□□ 2.67
TPM1-204ENST00000334895 CEP152O94986 1710 aa31.7■■■□□ 2.67
TPM1-204ENST00000334895 ABCC3O15438 1527 aa31.68■■■□□ 2.66
TPM1-204ENST00000334895 LMTK2Q8IWU2 1503 aa31.68■■■□□ 2.66
TPM1-204ENST00000334895 TET3O43151 1660 aa31.67■■■□□ 2.66
TPM1-204ENST00000334895 RIMS1Q86UR5 1692 aaKnown RBP31.67■■■□□ 2.66
TPM1-204ENST00000334895 PKD2Q13563 968 aa31.64■■■□□ 2.66
TPM1-204ENST00000334895 ZC3H13Q5T200 1668 aaKnown RBP31.64■■■□□ 2.65
TPM1-204ENST00000334895 FOXD1Q16676 465 aa31.64■■■□□ 2.65
TPM1-204ENST00000334895 E9PCH4 1651 aa31.62■■■□□ 2.65
TPM1-204ENST00000334895 EFCAB6Q5THR3 1501 aa31.61■■■□□ 2.65
TPM1-204ENST00000334895 WASHC2CQ9Y4E1 1318 aa31.6■■■□□ 2.65
TPM1-204ENST00000334895 CAMSAP1Q5T5Y3 1602 aa31.59■■■□□ 2.65
TPM1-204ENST00000334895 PPP6R1Q9UPN7 881 aa31.57■■■□□ 2.64
TPM1-204ENST00000334895 CLSPNQ9HAW4 1339 aa31.57■■■□□ 2.64
TPM1-204ENST00000334895 CLTCQ00610 1675 aaKnown RBP31.56■■■□□ 2.64
TPM1-204ENST00000334895 AEBP2Q6ZN18 517 aaPredicted RBP31.55■■■□□ 2.64
TPM1-204ENST00000334895 ANKRD30BQ9BXX2 1392 aa31.54■■■□□ 2.64
TPM1-204ENST00000334895 NPATQ14207 1427 aa31.51■■■□□ 2.64
TPM1-204ENST00000334895 PTPRMP28827 1452 aa31.51■■■□□ 2.63
TPM1-204ENST00000334895 PLA2R1Q13018 1463 aa31.49■■■□□ 2.63
TPM1-204ENST00000334895 ARHGAP31Q2M1Z3 1444 aa31.49■■■□□ 2.63
TPM1-204ENST00000334895 RPRD2Q5VT52 1461 aaKnown RBP31.48■■■□□ 2.63
TPM1-204ENST00000334895 MROH2AA6NES4 1674 aa31.46■■■□□ 2.63
TPM1-204ENST00000334895 C3P01024 1663 aa31.46■■■□□ 2.63
TPM1-204ENST00000334895 SPHKAPQ2M3C7 1700 aa31.45■■■□□ 2.63
TPM1-204ENST00000334895 SIN3AQ96ST3 1273 aa31.45■■■□□ 2.62
TPM1-204ENST00000334895 PTPRTO14522 1441 aa31.44■■■□□ 2.62
TPM1-204ENST00000334895 ESF1Q9H501 851 aaKnown RBP31.42■■■□□ 2.62
TPM1-204ENST00000334895 CNTLNQ9NXG0 1405 aa31.42■■■□□ 2.62
TPM1-204ENST00000334895 CFAP65Q6ZU64 1925 aaKnown RBP31.41■■■□□ 2.62
TPM1-204ENST00000334895 TRPM2O94759 1503 aa31.4■■■□□ 2.62
TPM1-204ENST00000334895 PLPPR3Q6T4P5 718 aa31.4■■■□□ 2.62
TPM1-204ENST00000334895 ZMYM3Q14202 1370 aa31.38■■■□□ 2.61
TPM1-204ENST00000334895 PREX1Q8TCU6 1659 aa31.37■■■□□ 2.61
TPM1-204ENST00000334895 NOS1P29475 1434 aa31.37■■■□□ 2.61
TPM1-204ENST00000334895 CEBPAP49715 358 aaPredicted RBP31.35■■■□□ 2.61
TPM1-204ENST00000334895 NEUROD1Q13562 356 aa31.34■■■□□ 2.61
TPM1-204ENST00000334895 SYNMO15061 1565 aa31.33■■■□□ 2.61
TPM1-204ENST00000334895 ERVK-7P63135 1459 aa31.33■■■□□ 2.61
TPM1-204ENST00000334895 CLTCL1P53675 1640 aa31.32■■■□□ 2.6
TPM1-204ENST00000334895 FBXO31Q5XUX0 539 aaPredicted RBP31.32■■■□□ 2.6
TPM1-204ENST00000334895 UGGT1Q9NYU2 1555 aa31.32■■■□□ 2.6
TPM1-204ENST00000334895 CCDC144AA2RUR9 1427 aa31.31■■■□□ 2.6
TPM1-204ENST00000334895 SPATA31D1Q6ZQQ2 1576 aa31.3■■■□□ 2.6
TPM1-204ENST00000334895 PIK3C2BO00750 1634 aa31.26■■■□□ 2.59
TPM1-204ENST00000334895 SETD1BQ9UPS6 1966 aaKnown RBP31.25■■■□□ 2.59
TPM1-204ENST00000334895 ZEB1P37275 1124 aaPredicted RBP31.18■■■□□ 2.58
TPM1-204ENST00000334895 SPATA31E1Q6ZUB1 1445 aa31.17■■■□□ 2.58
TPM1-204ENST00000334895 TONSLQ96HA7 1378 aa31.15■■■□□ 2.58
TPM1-204ENST00000334895 KIF1BO60333 1816 aa31.15■■■□□ 2.58
TPM1-204ENST00000334895 TNRQ92752 1358 aa31.15■■■□□ 2.58
TPM1-204ENST00000334895 IDI1Q13907 227 aa31.14■■■□□ 2.58
TPM1-204ENST00000334895 SLC52A1Q9NWF4 448 aa31.13■■■□□ 2.57
TPM1-204ENST00000334895 TIMELESSQ9UNS1 1208 aa31.13■■■□□ 2.57
TPM1-204ENST00000334895 NEURL4Q96JN8 1562 aa31.12■■■□□ 2.57
TPM1-204ENST00000334895 ADGRB3O60242 1522 aa31.12■■■□□ 2.57
TPM1-204ENST00000334895 MYO3AQ8NEV4 1616 aa31.12■■■□□ 2.57
TPM1-204ENST00000334895 L3MBTL2Q969R5 705 aa31.1■■■□□ 2.57
TPM1-204ENST00000334895 LMTK3Q96Q04 1460 aa31.09■■■□□ 2.57
TPM1-204ENST00000334895 TMEM131LA2VDJ0 1609 aa31.07■■■□□ 2.56
TPM1-204ENST00000334895 RGL3Q3MIN7 710 aa31.06■■■□□ 2.56
TPM1-204ENST00000334895 MYO5BQ9ULV0 1848 aa31.05■■■□□ 2.56
TPM1-204ENST00000334895 UHRF1BP1Q6BDS2 1440 aa31.04■■■□□ 2.56
TPM1-204ENST00000334895 ZNF142P52746 1687 aaPredicted RBP31.04■■■□□ 2.56
TPM1-204ENST00000334895 NLRP1Q9C000 1473 aa31.02■■■□□ 2.56
TPM1-204ENST00000334895 CHGAP10645 457 aaKnown RBP31.02■■■□□ 2.56
TPM1-204ENST00000334895 CEP170BQ9Y4F5 1589 aaPredicted RBP31■■■□□ 2.55
TPM1-204ENST00000334895 PPP1R15AO75807 674 aaPredicted RBP30.98■■■□□ 2.55
TPM1-204ENST00000334895 IFT172Q9UG01 1749 aa30.98■■■□□ 2.55
TPM1-204ENST00000334895 A2ML1A8K2U0 1454 aa30.97■■■□□ 2.55
TPM1-204ENST00000334895 UBR1Q8IWV7 1749 aa30.97■■■□□ 2.55
TPM1-204ENST00000334895 KDM5AP29375 1690 aaKnown RBP30.97■■■□□ 2.55
TPM1-204ENST00000334895 DCAF11Q8TEB1 546 aa30.95■■■□□ 2.55
TPM1-204ENST00000334895 PPLO60437 1756 aa30.94■■■□□ 2.54
TPM1-204ENST00000334895 HSPA2P54652 639 aa30.93■■■□□ 2.54
TPM1-204ENST00000334895 NEXMIFQ5QGS0 1516 aa30.92■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms