RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 FAM135AQ9P2D6 1515 aa23.56■■□□□ 1.36
COL9A1-201ENST00000320755 SYCP2Q9BX26 1530 aa23.56■■□□□ 1.36
COL9A1-201ENST00000320755 CDC42BPBQ9Y5S2 1711 aa23.55■■□□□ 1.36
COL9A1-201ENST00000320755 NUDCQ9Y266 331 aa23.54■■□□□ 1.36
COL9A1-201ENST00000320755 ARHGEF5Q12774 1597 aa23.53■■□□□ 1.36
COL9A1-201ENST00000320755 ARHGEF12Q9NZN5 1544 aa23.53■■□□□ 1.36
COL9A1-201ENST00000320755 KDM5DQ9BY66 1539 aa23.51■■□□□ 1.35
COL9A1-201ENST00000320755 PLEKHH2Q8IVE3 1493 aa23.5■■□□□ 1.35
COL9A1-201ENST00000320755 MSH5O43196 834 aa23.49■■□□□ 1.35
COL9A1-201ENST00000320755 ERCC6L2Q5T890 1561 aa23.49■■□□□ 1.35
COL9A1-201ENST00000320755 TTC37Q6PGP7 1564 aa23.49■■□□□ 1.35
COL9A1-201ENST00000320755 PREX2Q70Z35 1606 aa23.48■■□□□ 1.35
COL9A1-201ENST00000320755 MYBBP1AQ9BQG0 1328 aaKnown RBP23.48■■□□□ 1.35
COL9A1-201ENST00000320755 SMG6Q86US8 1419 aaKnown RBP23.48■■□□□ 1.35
COL9A1-201ENST00000320755 CHD1O14646 1710 aa23.48■■□□□ 1.35
COL9A1-201ENST00000320755 CC2D1BQ5T0F9 858 aaKnown RBP23.47■■□□□ 1.35
COL9A1-201ENST00000320755 RALBP1Q15311 655 aa23.46■■□□□ 1.35
COL9A1-201ENST00000320755 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.46■■□□□ 1.35
COL9A1-201ENST00000320755 PRAG1Q86YV5 1406 aa23.45■■□□□ 1.35
COL9A1-201ENST00000320755 PLA2R1Q13018 1463 aa23.45■■□□□ 1.34
COL9A1-201ENST00000320755 CCDC136Q96JN2 1154 aa23.44■■□□□ 1.34
COL9A1-201ENST00000320755 EFCAB2Q5VUJ9 269 aa23.42■■□□□ 1.34
COL9A1-201ENST00000320755 MYT1LQ9UL68 1186 aa23.41■■□□□ 1.34
COL9A1-201ENST00000320755 BRD4O60885 1362 aaPredicted RBP23.39■■□□□ 1.34
COL9A1-201ENST00000320755 KTN1Q86UP2 1357 aaKnown RBP23.39■■□□□ 1.34
COL9A1-201ENST00000320755 A2MP01023 1474 aa23.39■■□□□ 1.33
COL9A1-201ENST00000320755 AFAP1Q8N556 730 aa23.39■■□□□ 1.33
COL9A1-201ENST00000320755 PANK3Q9H999 370 aa23.39■■□□□ 1.33
COL9A1-201ENST00000320755 NLRP13Q86W25 1043 aa23.38■■□□□ 1.33
COL9A1-201ENST00000320755 ERICH6Q7L0X2 663 aa23.37■■□□□ 1.33
COL9A1-201ENST00000320755 DISP3Q9P2K9 1392 aa23.37■■□□□ 1.33
COL9A1-201ENST00000320755 TESK2Q96S53 571 aa23.36■■□□□ 1.33
COL9A1-201ENST00000320755 PER1O15534 1290 aaPredicted RBP23.35■■□□□ 1.33
COL9A1-201ENST00000320755 FANCIQ9NVI1 1328 aa23.35■■□□□ 1.33
COL9A1-201ENST00000320755 ABCC2Q92887 1545 aa23.35■■□□□ 1.33
COL9A1-201ENST00000320755 LRPPRCP42704 1394 aaKnown RBP23.33■■□□□ 1.33
COL9A1-201ENST00000320755 TMF1P82094 1093 aa23.32■■□□□ 1.32
COL9A1-201ENST00000320755 TRAPPC8Q9Y2L5 1435 aa23.32■■□□□ 1.32
COL9A1-201ENST00000320755 TRPM1Q7Z4N2 1603 aa23.32■■□□□ 1.32
COL9A1-201ENST00000320755 SPAG9O60271 1321 aaKnown RBP23.32■■□□□ 1.32
COL9A1-201ENST00000320755 MYO5CQ9NQX4 1742 aa23.31■■□□□ 1.32
COL9A1-201ENST00000320755 CDCA7LQ96GN5 454 aa23.3■■□□□ 1.32
COL9A1-201ENST00000320755 PLCH2O75038 1416 aa23.3■■□□□ 1.32
COL9A1-201ENST00000320755 RNF123Q5XPI4 1314 aa23.3■■□□□ 1.32
COL9A1-201ENST00000320755 UNC13BO14795 1591 aa23.28■■□□□ 1.32
COL9A1-201ENST00000320755 PARD3Q8TEW0 1356 aa23.28■■□□□ 1.32
COL9A1-201ENST00000320755 ERBINQ96RT1 1412 aa23.28■■□□□ 1.32
COL9A1-201ENST00000320755 DUOX2Q9NRD8 1548 aa23.27■■□□□ 1.32
COL9A1-201ENST00000320755 GPRASP1Q5JY77 1395 aa23.27■■□□□ 1.32
COL9A1-201ENST00000320755 RCAN3Q9UKA8 241 aa23.27■■□□□ 1.31
COL9A1-201ENST00000320755 MAST1Q9Y2H9 1570 aa23.26■■□□□ 1.31
COL9A1-201ENST00000320755 SHROOM2Q13796 1616 aa23.26■■□□□ 1.31
COL9A1-201ENST00000320755 EXOC6Q8TAG9 804 aa23.24■■□□□ 1.31
COL9A1-201ENST00000320755 IQGAP3Q86VI3 1631 aa23.23■■□□□ 1.31
COL9A1-201ENST00000320755 RRP1P56182 461 aaKnown RBP23.23■■□□□ 1.31
COL9A1-201ENST00000320755 COL17A1Q9UMD9 1497 aaPredicted RBP23.23■■□□□ 1.31
COL9A1-201ENST00000320755 PLXNC1O60486 1568 aa23.22■■□□□ 1.31
COL9A1-201ENST00000320755 E9PCH4 1651 aa23.21■■□□□ 1.31
COL9A1-201ENST00000320755 KIF3BO15066 747 aa23.21■■□□□ 1.31
COL9A1-201ENST00000320755 ZCCHC11Q5TAX3 1644 aaKnown RBP23.2■■□□□ 1.3
COL9A1-201ENST00000320755 KNSTRNQ9Y448 316 aa23.19■■□□□ 1.3
COL9A1-201ENST00000320755 PLIN1O60240 522 aa23.19■■□□□ 1.3
COL9A1-201ENST00000320755 PRDM15P57071 1507 aaPredicted RBP23.18■■□□□ 1.3
COL9A1-201ENST00000320755 ADAMTS8Q9UP79 889 aa23.15■■□□□ 1.3
COL9A1-201ENST00000320755 WASHC2CQ9Y4E1 1318 aa23.15■■□□□ 1.3
COL9A1-201ENST00000320755 ABCC1P33527 1531 aa23.14■■□□□ 1.3
COL9A1-201ENST00000320755 PDE3BQ13370 1112 aa23.13■■□□□ 1.29
COL9A1-201ENST00000320755 ATP10AO60312 1499 aa23.13■■□□□ 1.29
COL9A1-201ENST00000320755 MAGI2Q86UL8 1455 aa23.11■■□□□ 1.29
COL9A1-201ENST00000320755 EIF2AK4Q9P2K8 1649 aaKnown RBP23.11■■□□□ 1.29
COL9A1-201ENST00000320755 SCAPERQ9BY12 1400 aa23.1■■□□□ 1.29
COL9A1-201ENST00000320755 WDR43Q15061 677 aaKnown RBP eCLIP23.1■■□□□ 1.29
COL9A1-201ENST00000320755 PPP2R1AP30153 589 aa23.09■■□□□ 1.29
COL9A1-201ENST00000320755 CHGAP10645 457 aaKnown RBP23.08■■□□□ 1.29
COL9A1-201ENST00000320755 CFAP70Q5T0N1 1121 aa23.08■■□□□ 1.29
COL9A1-201ENST00000320755 KANK1Q14678 1352 aa23.07■■□□□ 1.28
COL9A1-201ENST00000320755 UHRF1BP1LA0JNW5 1464 aa23.06■■□□□ 1.28
COL9A1-201ENST00000320755 PAK3O75914 559 aaPredicted RBP23.05■■□□□ 1.28
COL9A1-201ENST00000320755 CDCA8Q53HL2 280 aa23.05■■□□□ 1.28
COL9A1-201ENST00000320755 AMER1Q5JTC6 1135 aaPredicted RBP23.05■■□□□ 1.28
COL9A1-201ENST00000320755 NPM2Q86SE8 214 aaKnown RBP23.05■■□□□ 1.28
COL9A1-201ENST00000320755 FANCAO15360 1455 aa23.04■■□□□ 1.28
COL9A1-201ENST00000320755 ANP32AP39687 249 aaKnown RBP23.04■■□□□ 1.28
COL9A1-201ENST00000320755 LAMC1P11047 1609 aa23.04■■□□□ 1.28
COL9A1-201ENST00000320755 CLASP1Q7Z460 1538 aa23.03■■□□□ 1.28
COL9A1-201ENST00000320755 WDR7Q9Y4E6 1490 aa23.03■■□□□ 1.28
COL9A1-201ENST00000320755 NOP58Q9Y2X3 529 aaKnown RBP23.03■■□□□ 1.28
COL9A1-201ENST00000320755 CCDC146Q8IYE0 955 aa23.02■■□□□ 1.28
COL9A1-201ENST00000320755 SKAP1Q86WV1 359 aa23.02■■□□□ 1.28
COL9A1-201ENST00000320755 CRBNQ96SW2 442 aa23.02■■□□□ 1.28
COL9A1-201ENST00000320755 RTEL1-TNFRSF6BF6WH68 1400 aa23.02■■□□□ 1.28
COL9A1-201ENST00000320755 ZFYVE16Q7Z3T8 1539 aa23.01■■□□□ 1.27
COL9A1-201ENST00000320755 ADGRF5Q8IZF2 1346 aa23.01■■□□□ 1.27
COL9A1-201ENST00000320755 SCAF11Q99590 1463 aaKnown RBP23■■□□□ 1.27
COL9A1-201ENST00000320755 NBR1Q14596 966 aa23■■□□□ 1.27
COL9A1-201ENST00000320755 MADDQ8WXG6 1647 aa22.99■■□□□ 1.27
COL9A1-201ENST00000320755 BLMP54132 1417 aaPredicted RBP22.99■■□□□ 1.27
COL9A1-201ENST00000320755 C20orf194Q5TEA3 1177 aa22.99■■□□□ 1.27
COL9A1-201ENST00000320755 CLTCL1P53675 1640 aa22.98■■□□□ 1.27
COL9A1-201ENST00000320755 TRPM2O94759 1503 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms