RNA–Protein interactions for RNA: ENST00000316763.7

VRK3-201, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 1,938 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-201ENST00000316763 DIP2CQ9Y2E4 1556 aa20.3■□□□□ 0.84
VRK3-201ENST00000316763 MPHOSPH9Q99550 1183 aa20.29■□□□□ 0.84
VRK3-201ENST00000316763 DUOX2Q9NRD8 1548 aa20.28■□□□□ 0.84
VRK3-201ENST00000316763 ARHGEF40Q8TER5 1519 aa20.27■□□□□ 0.84
VRK3-201ENST00000316763 ATP10AO60312 1499 aa20.27■□□□□ 0.84
VRK3-201ENST00000316763 SIN3AQ96ST3 1273 aa20.26■□□□□ 0.83
VRK3-201ENST00000316763 PZPP20742 1482 aa20.26■□□□□ 0.83
VRK3-201ENST00000316763 A2MP01023 1474 aa20.25■□□□□ 0.83
VRK3-201ENST00000316763 ERBINQ96RT1 1412 aa20.25■□□□□ 0.83
VRK3-201ENST00000316763 DHX29Q7Z478 1369 aaKnown RBP20.24■□□□□ 0.83
VRK3-201ENST00000316763 KDM5DQ9BY66 1539 aa20.23■□□□□ 0.83
VRK3-201ENST00000316763 SLC4A1APQ9BWU0 796 aaKnown RBP20.21■□□□□ 0.83
VRK3-201ENST00000316763 SIGLEC1Q9BZZ2 1709 aa20.2■□□□□ 0.82
VRK3-201ENST00000316763 NUP155O75694 1391 aa20.2■□□□□ 0.82
VRK3-201ENST00000316763 REREQ9P2R6 1566 aa20.2■□□□□ 0.82
VRK3-201ENST00000316763 UNC13BO14795 1591 aa20.18■□□□□ 0.82
VRK3-201ENST00000316763 KIF3BO15066 747 aa20.17■□□□□ 0.82
VRK3-201ENST00000316763 PPP1R15AO75807 674 aaPredicted RBP20.16■□□□□ 0.82
VRK3-201ENST00000316763 PELP1Q8IZL8 1130 aaKnown RBP20.16■□□□□ 0.82
VRK3-201ENST00000316763 ANKRD30BQ9BXX2 1392 aa20.16■□□□□ 0.82
VRK3-201ENST00000316763 EIF2AK4Q9P2K8 1649 aaKnown RBP20.15■□□□□ 0.82
VRK3-201ENST00000316763 AGLP35573 1532 aa20.14■□□□□ 0.81
VRK3-201ENST00000316763 TONSLQ96HA7 1378 aa20.14■□□□□ 0.81
VRK3-201ENST00000316763 FOXD1Q16676 465 aa20.14■□□□□ 0.81
VRK3-201ENST00000316763 BCORL1Q5H9F3 1711 aa20.13■□□□□ 0.81
VRK3-201ENST00000316763 ARID4BQ4LE39 1312 aaPredicted RBP20.13■□□□□ 0.81
VRK3-201ENST00000316763 FAM135AQ9P2D6 1515 aa20.12■□□□□ 0.81
VRK3-201ENST00000316763 PKD2Q13563 968 aa20.12■□□□□ 0.81
VRK3-201ENST00000316763 GGT6Q6P531 493 aa20.1■□□□□ 0.81
VRK3-201ENST00000316763 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.1■□□□□ 0.81
VRK3-201ENST00000316763 IQGAP3Q86VI3 1631 aa20.09■□□□□ 0.81
VRK3-201ENST00000316763 MLECQ14165 292 aa20.09■□□□□ 0.81
VRK3-201ENST00000316763 DEPDC5O75140 1603 aa20.09■□□□□ 0.81
VRK3-201ENST00000316763 RNF17Q9BXT8 1623 aaKnown RBP20.09■□□□□ 0.81
VRK3-201ENST00000316763 MROH1Q8NDA8 1641 aa20.07■□□□□ 0.8
VRK3-201ENST00000316763 RPRD2Q5VT52 1461 aaKnown RBP20.05■□□□□ 0.8
VRK3-201ENST00000316763 PRDM15P57071 1507 aaPredicted RBP20.04■□□□□ 0.8
VRK3-201ENST00000316763 VWDEQ8N2E2 1590 aa20.03■□□□□ 0.8
VRK3-201ENST00000316763 KANK1Q14678 1352 aa20.01■□□□□ 0.79
VRK3-201ENST00000316763 WASHC2CQ9Y4E1 1318 aa19.99■□□□□ 0.79
VRK3-201ENST00000316763 DDX10Q13206 875 aaKnown RBP19.99■□□□□ 0.79
VRK3-201ENST00000316763 PPP6R1Q9UPN7 881 aa19.99■□□□□ 0.79
VRK3-201ENST00000316763 CEP152O94986 1710 aa19.99■□□□□ 0.79
VRK3-201ENST00000316763 ABCC3O15438 1527 aa19.96■□□□□ 0.79
VRK3-201ENST00000316763 PLA2R1Q13018 1463 aa19.96■□□□□ 0.79
VRK3-201ENST00000316763 CLTCQ00610 1675 aaKnown RBP19.95■□□□□ 0.79
VRK3-201ENST00000316763 ADAMTSL3P82987 1691 aa19.94■□□□□ 0.78
VRK3-201ENST00000316763 ZC3H13Q5T200 1668 aaKnown RBP19.94■□□□□ 0.78
VRK3-201ENST00000316763 FER1L4A9Z1Z3 1794 aa19.94■□□□□ 0.78
VRK3-201ENST00000316763 ESF1Q9H501 851 aaKnown RBP19.94■□□□□ 0.78
VRK3-201ENST00000316763 LMTK2Q8IWU2 1503 aa19.94■□□□□ 0.78
VRK3-201ENST00000316763 TET3O43151 1660 aa19.93■□□□□ 0.78
VRK3-201ENST00000316763 L3MBTL2Q969R5 705 aa19.93■□□□□ 0.78
VRK3-201ENST00000316763 MADDQ8WXG6 1647 aa19.91■□□□□ 0.78
VRK3-201ENST00000316763 CAMSAP1Q5T5Y3 1602 aa19.91■□□□□ 0.78
VRK3-201ENST00000316763 CFAP65Q6ZU64 1925 aaKnown RBP19.91■□□□□ 0.78
VRK3-201ENST00000316763 E9PCH4 1651 aa19.9■□□□□ 0.78
VRK3-201ENST00000316763 PTPRTO14522 1441 aa19.89■□□□□ 0.78
VRK3-201ENST00000316763 CCDC144AA2RUR9 1427 aa19.89■□□□□ 0.77
VRK3-201ENST00000316763 CNTLNQ9NXG0 1405 aa19.89■□□□□ 0.77
VRK3-201ENST00000316763 EFCAB6Q5THR3 1501 aa19.89■□□□□ 0.77
VRK3-201ENST00000316763 HIRIP3Q9BW71 556 aaPredicted RBP19.88■□□□□ 0.77
VRK3-201ENST00000316763 ZMYM3Q14202 1370 aa19.88■□□□□ 0.77
VRK3-201ENST00000316763 RIMS1Q86UR5 1692 aaKnown RBP19.88■□□□□ 0.77
VRK3-201ENST00000316763 ANP32CO43423 234 aa19.87■□□□□ 0.77
VRK3-201ENST00000316763 MROH2AA6NES4 1674 aa19.87■□□□□ 0.77
VRK3-201ENST00000316763 NPATQ14207 1427 aa19.86■□□□□ 0.77
VRK3-201ENST00000316763 CCER2I3L3R5 266 aa19.85■□□□□ 0.77
VRK3-201ENST00000316763 ARHGAP31Q2M1Z3 1444 aa19.85■□□□□ 0.77
VRK3-201ENST00000316763 KDM4FA0A1W2PPD8 638 aa19.84■□□□□ 0.77
VRK3-201ENST00000316763 TRPM2O94759 1503 aa19.84■□□□□ 0.77
VRK3-201ENST00000316763 C3P01024 1663 aa19.83■□□□□ 0.77
VRK3-201ENST00000316763 CEBPAP49715 358 aaPredicted RBP19.83■□□□□ 0.77
VRK3-201ENST00000316763 FBXO31Q5XUX0 539 aaPredicted RBP19.82■□□□□ 0.76
VRK3-201ENST00000316763 PLPPR3Q6T4P5 718 aa19.81■□□□□ 0.76
VRK3-201ENST00000316763 SPHKAPQ2M3C7 1700 aa19.8■□□□□ 0.76
VRK3-201ENST00000316763 PREX1Q8TCU6 1659 aa19.79■□□□□ 0.76
VRK3-201ENST00000316763 NBPF8Q3BBV2 869 aa19.78■□□□□ 0.76
VRK3-201ENST00000316763 PTPRMP28827 1452 aa19.78■□□□□ 0.76
VRK3-201ENST00000316763 UHRF1BP1Q6BDS2 1440 aa19.77■□□□□ 0.76
VRK3-201ENST00000316763 SPATA31E1Q6ZUB1 1445 aa19.77■□□□□ 0.76
VRK3-201ENST00000316763 EIF4G2P78344 907 aaKnown RBP eCLIP19.76■□□□□ 0.751e-6■■■■■ 27.9
VRK3-201ENST00000316763 ERVK-7P63135 1459 aa19.76■□□□□ 0.75
VRK3-201ENST00000316763 NOS1P29475 1434 aa19.76■□□□□ 0.75
VRK3-201ENST00000316763 CLTCL1P53675 1640 aa19.75■□□□□ 0.75
VRK3-201ENST00000316763 SPATA31D1Q6ZQQ2 1576 aa19.75■□□□□ 0.75
VRK3-201ENST00000316763 HSPA5P11021 654 aaKnown RBP19.74■□□□□ 0.75
VRK3-201ENST00000316763 SYNMO15061 1565 aa19.73■□□□□ 0.75
VRK3-201ENST00000316763 NEURL4Q96JN8 1562 aa19.73■□□□□ 0.75
VRK3-201ENST00000316763 DCAF11Q8TEB1 546 aa19.71■□□□□ 0.75
VRK3-201ENST00000316763 RGL3Q3MIN7 710 aa19.7■□□□□ 0.74
VRK3-201ENST00000316763 UGGT1Q9NYU2 1555 aa19.7■□□□□ 0.74
VRK3-201ENST00000316763 TNRQ92752 1358 aa19.7■□□□□ 0.74
VRK3-201ENST00000316763 SETD1BQ9UPS6 1966 aaKnown RBP19.69■□□□□ 0.74
VRK3-201ENST00000316763 SUPT16HQ9Y5B9 1047 aaKnown RBP19.68■□□□□ 0.74
VRK3-201ENST00000316763 IDI1Q13907 227 aa19.68■□□□□ 0.74
VRK3-201ENST00000316763 SLC52A1Q9NWF4 448 aa19.67■□□□□ 0.74
VRK3-201ENST00000316763 PIK3C2BO00750 1634 aa19.67■□□□□ 0.74
VRK3-201ENST00000316763 KDM2AQ9Y2K7 1162 aa19.66■□□□□ 0.74
VRK3-201ENST00000316763 PRAG1Q86YV5 1406 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 84.5 ms