RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 RRBP1Q9P2E9 1410 aaKnown RBP18.46■□□□□ 0.54
SCFD1-201ENST00000311943 MROH1Q8NDA8 1641 aa18.45■□□□□ 0.54
SCFD1-201ENST00000311943 ANKRD30AQ9BXX3 1397 aa18.44■□□□□ 0.54
SCFD1-201ENST00000311943 DUOX2Q9NRD8 1548 aa18.44■□□□□ 0.54
SCFD1-201ENST00000311943 LMTK3Q96Q04 1460 aa18.44■□□□□ 0.54
SCFD1-201ENST00000311943 WASHC2CQ9Y4E1 1318 aa18.43■□□□□ 0.54
SCFD1-201ENST00000311943 ADGRL2O95490 1459 aa18.41■□□□□ 0.54
SCFD1-201ENST00000311943 CEP152O94986 1710 aa18.38■□□□□ 0.53
SCFD1-201ENST00000311943 RNF17Q9BXT8 1623 aaKnown RBP18.38■□□□□ 0.53
SCFD1-201ENST00000311943 ANKRD50Q9ULJ7 1429 aa18.38■□□□□ 0.53
SCFD1-201ENST00000311943 ERBINQ96RT1 1412 aa18.37■□□□□ 0.53
SCFD1-201ENST00000311943 CNTLNQ9NXG0 1405 aa18.37■□□□□ 0.53
SCFD1-201ENST00000311943 ABCC3O15438 1527 aa18.36■□□□□ 0.53
SCFD1-201ENST00000311943 KDM5DQ9BY66 1539 aa18.36■□□□□ 0.53
SCFD1-201ENST00000311943 EIF2AK4Q9P2K8 1649 aaKnown RBP18.36■□□□□ 0.53
SCFD1-201ENST00000311943 CFAP65Q6ZU64 1925 aaKnown RBP18.36■□□□□ 0.53
SCFD1-201ENST00000311943 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.36■□□□□ 0.53
SCFD1-201ENST00000311943 MROH2AA6NES4 1674 aa18.35■□□□□ 0.53
SCFD1-201ENST00000311943 PRDM15P57071 1507 aaPredicted RBP18.31■□□□□ 0.52
SCFD1-201ENST00000311943 DEPDC5O75140 1603 aa18.31■□□□□ 0.52
SCFD1-201ENST00000311943 PPP6R1Q9UPN7 881 aa18.31■□□□□ 0.52
SCFD1-201ENST00000311943 ROCK1Q13464 1354 aa18.31■□□□□ 0.52
SCFD1-201ENST00000311943 PREX1Q8TCU6 1659 aa18.3■□□□□ 0.52
SCFD1-201ENST00000311943 CAMSAP1Q5T5Y3 1602 aa18.29■□□□□ 0.52
SCFD1-201ENST00000311943 UHRF1BP1Q6BDS2 1440 aa18.29■□□□□ 0.52
SCFD1-201ENST00000311943 PZPP20742 1482 aa18.28■□□□□ 0.52
SCFD1-201ENST00000311943 NAIPQ13075 1403 aa18.28■□□□□ 0.52
SCFD1-201ENST00000311943 NPATQ14207 1427 aa18.27■□□□□ 0.52
SCFD1-201ENST00000311943 MYO3AQ8NEV4 1616 aa18.26■□□□□ 0.51
SCFD1-201ENST00000311943 VWDEQ8N2E2 1590 aa18.26■□□□□ 0.51
SCFD1-201ENST00000311943 SETD1BQ9UPS6 1966 aaKnown RBP18.25■□□□□ 0.51
SCFD1-201ENST00000311943 TNRQ92752 1358 aa18.25■□□□□ 0.51
SCFD1-201ENST00000311943 ERVK-7P63135 1459 aa18.23■□□□□ 0.51
SCFD1-201ENST00000311943 ZC3H13Q5T200 1668 aaKnown RBP18.23■□□□□ 0.51
SCFD1-201ENST00000311943 NUP155O75694 1391 aa18.22■□□□□ 0.51
SCFD1-201ENST00000311943 NCKAP5LQ9HCH0 1330 aa18.22■□□□□ 0.51
SCFD1-201ENST00000311943 STRCQ7RTU9 1775 aa18.22■□□□□ 0.51
SCFD1-201ENST00000311943 UNC13BO14795 1591 aa18.21■□□□□ 0.51
SCFD1-201ENST00000311943 KANK1Q14678 1352 aa18.21■□□□□ 0.51
SCFD1-201ENST00000311943 CEP170BQ9Y4F5 1589 aaPredicted RBP18.21■□□□□ 0.51
SCFD1-201ENST00000311943 SPATA31D1Q6ZQQ2 1576 aa18.19■□□□□ 0.5
SCFD1-201ENST00000311943 HFM1A2PYH4 1435 aa18.19■□□□□ 0.5
SCFD1-201ENST00000311943 GCC2Q8IWJ2 1684 aa18.18■□□□□ 0.5
SCFD1-201ENST00000311943 SENP3Q9H4L4 574 aaPredicted RBP18.18■□□□□ 0.5
SCFD1-201ENST00000311943 EFCAB6Q5THR3 1501 aa18.18■□□□□ 0.5
SCFD1-201ENST00000311943 LMTK2Q8IWU2 1503 aa18.18■□□□□ 0.5
SCFD1-201ENST00000311943 FAM135AQ9P2D6 1515 aa18.18■□□□□ 0.5
SCFD1-201ENST00000311943 UGGT1Q9NYU2 1555 aa18.17■□□□□ 0.5
SCFD1-201ENST00000311943 TRIM52Q96A61 297 aa18.16■□□□□ 0.5
SCFD1-201ENST00000311943 ARHGAP31Q2M1Z3 1444 aa18.16■□□□□ 0.5
SCFD1-201ENST00000311943 SYNMO15061 1565 aa18.16■□□□□ 0.5
SCFD1-201ENST00000311943 IDI1Q13907 227 aa18.16■□□□□ 0.5
SCFD1-201ENST00000311943 FOXD1Q16676 465 aa18.16■□□□□ 0.5
SCFD1-201ENST00000311943 E9PCH4 1651 aa18.15■□□□□ 0.5
SCFD1-201ENST00000311943 A2ML1A8K2U0 1454 aa18.15■□□□□ 0.5
SCFD1-201ENST00000311943 ZNF142P52746 1687 aaPredicted RBP18.15■□□□□ 0.5
SCFD1-201ENST00000311943 IQGAP3Q86VI3 1631 aa18.14■□□□□ 0.49
SCFD1-201ENST00000311943 TET3O43151 1660 aa18.13■□□□□ 0.49
SCFD1-201ENST00000311943 NOS1P29475 1434 aa18.12■□□□□ 0.49
SCFD1-201ENST00000311943 PIK3C2BO00750 1634 aa18.11■□□□□ 0.49
SCFD1-201ENST00000311943 NLRP1Q9C000 1473 aa18.09■□□□□ 0.49
SCFD1-201ENST00000311943 UBR1Q8IWV7 1749 aa18.08■□□□□ 0.48
SCFD1-201ENST00000311943 LTKP29376 864 aa18.08■□□□□ 0.48
SCFD1-201ENST00000311943 PKD2Q13563 968 aa18.07■□□□□ 0.48
SCFD1-201ENST00000311943 NUTM2DQ5VT03 806 aaPredicted RBP18.07■□□□□ 0.48
SCFD1-201ENST00000311943 RAB3GAP2Q9H2M9 1393 aa18.07■□□□□ 0.48
SCFD1-201ENST00000311943 CHGAP10645 457 aaKnown RBP18.06■□□□□ 0.48
SCFD1-201ENST00000311943 SLC4A1APQ9BWU0 796 aaKnown RBP18.06■□□□□ 0.48
SCFD1-201ENST00000311943 SETD5Q9C0A6 1442 aa18.05■□□□□ 0.48
SCFD1-201ENST00000311943 NEURL4Q96JN8 1562 aa18.05■□□□□ 0.48
SCFD1-201ENST00000311943 THEMISQ8N1K5 641 aaPredicted RBP18.05■□□□□ 0.48
SCFD1-201ENST00000311943 STAG3Q9UJ98 1225 aa18.04■□□□□ 0.48
SCFD1-201ENST00000311943 MYO5BQ9ULV0 1848 aa18.04■□□□□ 0.48
SCFD1-201ENST00000311943 PLA2R1Q13018 1463 aa18.03■□□□□ 0.48
SCFD1-201ENST00000311943 RPRD2Q5VT52 1461 aaKnown RBP18.03■□□□□ 0.48
SCFD1-201ENST00000311943 ZNF335Q9H4Z2 1342 aaPredicted RBP18.02■□□□□ 0.48
SCFD1-201ENST00000311943 MPHOSPH9Q99550 1183 aa18.01■□□□□ 0.47
SCFD1-201ENST00000311943 TXNDC2Q86VQ3 553 aa18■□□□□ 0.47
SCFD1-201ENST00000311943 ANKLE2Q86XL3 938 aa18■□□□□ 0.47
SCFD1-201ENST00000311943 SLC52A1Q9NWF4 448 aa17.98■□□□□ 0.47
SCFD1-201ENST00000311943 POLR1AO95602 1720 aaPredicted RBP17.98■□□□□ 0.47
SCFD1-201ENST00000311943 SPHKAPQ2M3C7 1700 aa17.98■□□□□ 0.47
SCFD1-201ENST00000311943 TMEM2Q9UHN6 1383 aa17.98■□□□□ 0.47
SCFD1-201ENST00000311943 PTPRTO14522 1441 aa17.97■□□□□ 0.47
SCFD1-201ENST00000311943 TMEM131LA2VDJ0 1609 aa17.97■□□□□ 0.47
SCFD1-201ENST00000311943 CLTCL1P53675 1640 aa17.96■□□□□ 0.47
SCFD1-201ENST00000311943 ADGRB3O60242 1522 aa17.96■□□□□ 0.47
SCFD1-201ENST00000311943 ARHGAP23Q9P227 1491 aa17.96■□□□□ 0.47
SCFD1-201ENST00000311943 DMRT2Q9Y5R5 561 aa17.95■□□□□ 0.46
SCFD1-201ENST00000311943 NPHP4O75161 1426 aaPredicted RBP17.95■□□□□ 0.46
SCFD1-201ENST00000311943 SLC26A8Q96RN1 970 aa17.94■□□□□ 0.46
SCFD1-201ENST00000311943 SLIT1O75093 1534 aa17.94■□□□□ 0.46
SCFD1-201ENST00000311943 SCAF11Q99590 1463 aaKnown RBP17.93■□□□□ 0.46
SCFD1-201ENST00000311943 LTBP4Q8N2S1 1624 aa17.92■□□□□ 0.46
SCFD1-201ENST00000311943 ZFYVE9O95405 1425 aa17.91■□□□□ 0.46
SCFD1-201ENST00000311943 MED14O60244 1454 aa17.91■□□□□ 0.46
SCFD1-201ENST00000311943 IQGAP1P46940 1657 aa17.91■□□□□ 0.46
SCFD1-201ENST00000311943 RIMS2Q9UQ26 1411 aa17.9■□□□□ 0.46
SCFD1-201ENST00000311943 TRPM2O94759 1503 aa17.9■□□□□ 0.46
SCFD1-201ENST00000311943 CERKQ8TCT0 537 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms