RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 RAPGEF6Q8TEU7 1601 aa10.4□□□□□ -0.75
DEPDC4-201ENST00000299185 CDK13Q14004 1512 aaKnown RBP10.39□□□□□ -0.75
DEPDC4-201ENST00000299185 LRRIQ1Q96JM4 1722 aa10.39□□□□□ -0.75
DEPDC4-201ENST00000299185 POTEB3A0JP26 581 aa10.39□□□□□ -0.75
DEPDC4-201ENST00000299185 POTEBQ6S5H4 581 aa10.39□□□□□ -0.75
DEPDC4-201ENST00000299185 PDAP1Q13442 181 aaKnown RBP10.38□□□□□ -0.75
DEPDC4-201ENST00000299185 VPS8Q8N3P4 1428 aa10.38□□□□□ -0.75
DEPDC4-201ENST00000299185 NUP153P49790 1475 aaKnown RBP10.37□□□□□ -0.75
DEPDC4-201ENST00000299185 ABCC2Q92887 1545 aa10.37□□□□□ -0.75
DEPDC4-201ENST00000299185 VASPP50552 380 aaPredicted RBP10.36□□□□□ -0.75
DEPDC4-201ENST00000299185 HECW1Q76N89 1606 aa10.36□□□□□ -0.75
DEPDC4-201ENST00000299185 UACAQ9BZF9 1416 aa10.35□□□□□ -0.75
DEPDC4-201ENST00000299185 DPY19L2Q6NUT2 758 aa10.35□□□□□ -0.75
DEPDC4-201ENST00000299185 FMN1Q68DA7 1419 aa10.34□□□□□ -0.75
DEPDC4-201ENST00000299185 ATP1B4Q9UN42 357 aaPredicted RBP10.34□□□□□ -0.75
DEPDC4-201ENST00000299185 BOLA1Q9Y3E2 137 aa10.34□□□□□ -0.75
DEPDC4-201ENST00000299185 CASKIN1Q8WXD9 1431 aa10.33□□□□□ -0.76
DEPDC4-201ENST00000299185 ZCCHC11Q5TAX3 1644 aaKnown RBP10.33□□□□□ -0.76
DEPDC4-201ENST00000299185 FYCO1Q9BQS8 1478 aa10.33□□□□□ -0.76
DEPDC4-201ENST00000299185 CFAP43Q8NDM7 1665 aa10.32□□□□□ -0.76
DEPDC4-201ENST00000299185 ZNF710Q8N1W2 664 aa10.32□□□□□ -0.76
DEPDC4-201ENST00000299185 MAGI3Q5TCQ9 1506 aa10.32□□□□□ -0.76
DEPDC4-201ENST00000299185 UHRF1BP1LA0JNW5 1464 aa10.31□□□□□ -0.76
DEPDC4-201ENST00000299185 EPRSP07814 1512 aaKnown RBP10.31□□□□□ -0.76
DEPDC4-201ENST00000299185 HOXB1P14653 301 aaPredicted RBP10.3□□□□□ -0.76
DEPDC4-201ENST00000299185 DOK7Q18PE1 504 aa10.3□□□□□ -0.76
DEPDC4-201ENST00000299185 HOXB3P14651 431 aaPredicted RBP10.29□□□□□ -0.76
DEPDC4-201ENST00000299185 PPARGC1BQ86YN6 1023 aaKnown RBP10.29□□□□□ -0.76
DEPDC4-201ENST00000299185 CABP2Q9NPB3 220 aa10.29□□□□□ -0.76
DEPDC4-201ENST00000299185 TIAM1Q13009 1591 aa10.29□□□□□ -0.76
DEPDC4-201ENST00000299185 ATP10BO94823 1461 aa10.29□□□□□ -0.76
DEPDC4-201ENST00000299185 KDM5BQ9UGL1 1544 aa10.28□□□□□ -0.76
DEPDC4-201ENST00000299185 RIMBP2O15034 1052 aa10.27□□□□□ -0.77
DEPDC4-201ENST00000299185 ERBB3P21860 1342 aa10.27□□□□□ -0.77
DEPDC4-201ENST00000299185 KIF14Q15058 1648 aa10.26□□□□□ -0.77
DEPDC4-201ENST00000299185 ASXL2Q76L83 1435 aa10.24□□□□□ -0.77
DEPDC4-201ENST00000299185 CCDC18Q5T9S5 1454 aa10.24□□□□□ -0.77
DEPDC4-201ENST00000299185 KANK4Q5T7N3 995 aaPredicted RBP10.23□□□□□ -0.77
DEPDC4-201ENST00000299185 SPOCK2Q92563 424 aa10.22□□□□□ -0.77
DEPDC4-201ENST00000299185 CIZ1Q9ULV3 898 aaPredicted RBP10.22□□□□□ -0.77
DEPDC4-201ENST00000299185 WDR7Q9Y4E6 1490 aa10.22□□□□□ -0.77
DEPDC4-201ENST00000299185 EHBP1L1Q8N3D4 1523 aa10.22□□□□□ -0.77
DEPDC4-201ENST00000299185 TTC37Q6PGP7 1564 aa10.22□□□□□ -0.77
DEPDC4-201ENST00000299185 RNF166Q96A37 237 aaPredicted RBP10.21□□□□□ -0.77
DEPDC4-201ENST00000299185 MAPKBP1O60336 1514 aa10.21□□□□□ -0.78
DEPDC4-201ENST00000299185 TROQ12816 1431 aaPredicted RBP10.2□□□□□ -0.78
DEPDC4-201ENST00000299185 LRRC9Q6ZRR7 1453 aa10.2□□□□□ -0.78
DEPDC4-201ENST00000299185 DIP2BQ9P265 1576 aa10.2□□□□□ -0.78
DEPDC4-201ENST00000299185 ZSWIM6Q9HCJ5 1215 aa10.19□□□□□ -0.78
DEPDC4-201ENST00000299185 MTUS2Q5JR59 1369 aa10.18□□□□□ -0.78
DEPDC4-201ENST00000299185 KCNH8Q96L42 1107 aa10.17□□□□□ -0.78
DEPDC4-201ENST00000299185 MAP3K1Q13233 1512 aa10.17□□□□□ -0.78
DEPDC4-201ENST00000299185 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.17□□□□□ -0.78
DEPDC4-201ENST00000299185 NCOA2Q15596 1464 aa10.17□□□□□ -0.78
DEPDC4-201ENST00000299185 ABCC10Q5T3U5 1492 aa10.17□□□□□ -0.78
DEPDC4-201ENST00000299185 VARS2Q5ST30 1063 aaKnown RBP10.16□□□□□ -0.78
DEPDC4-201ENST00000299185 IFNLR1Q8IU57 520 aaPredicted RBP10.16□□□□□ -0.78
DEPDC4-201ENST00000299185 MYT1LQ9UL68 1186 aa10.16□□□□□ -0.78
DEPDC4-201ENST00000299185 KIF13AQ9H1H9 1805 aa10.16□□□□□ -0.78
DEPDC4-201ENST00000299185 SUPT6HQ7KZ85 1726 aaKnown RBP10.15□□□□□ -0.78
DEPDC4-201ENST00000299185 PHLDB1Q86UU1 1377 aa10.14□□□□□ -0.79
DEPDC4-201ENST00000299185 PTGER2P43116 358 aa10.14□□□□□ -0.79
DEPDC4-201ENST00000299185 ZNF687Q8N1G0 1237 aa10.13□□□□□ -0.79
DEPDC4-201ENST00000299185 ABCA9Q8IUA7 1624 aa10.13□□□□□ -0.79
DEPDC4-201ENST00000299185 PPRC1Q5VV67 1664 aaKnown RBP10.12□□□□□ -0.79
DEPDC4-201ENST00000299185 PLEKHD1A6NEE1 506 aa10.12□□□□□ -0.79
DEPDC4-201ENST00000299185 CDC42BPAQ5VT25 1732 aa10.12□□□□□ -0.79
DEPDC4-201ENST00000299185 PREX2Q70Z35 1606 aa10.11□□□□□ -0.79
DEPDC4-201ENST00000299185 MAP3K4Q9Y6R4 1608 aa10.11□□□□□ -0.79
DEPDC4-201ENST00000299185 TSPOAP1O95153 1857 aa10.11□□□□□ -0.79
DEPDC4-201ENST00000299185 EFCAB3Q8N7B9 438 aa10.11□□□□□ -0.79
DEPDC4-201ENST00000299185 GLI2P10070 1586 aa10.1□□□□□ -0.79
DEPDC4-201ENST00000299185 FAM69CQ0P6D2 419 aa10.1□□□□□ -0.79
DEPDC4-201ENST00000299185 MYO5CQ9NQX4 1742 aa10.1□□□□□ -0.79
DEPDC4-201ENST00000299185 GPATCH8Q9UKJ3 1502 aaKnown RBP10.09□□□□□ -0.79
DEPDC4-201ENST00000299185 ARHGAP5Q13017 1502 aa10.08□□□□□ -0.8
DEPDC4-201ENST00000299185 CDC42BPBQ9Y5S2 1711 aa10.08□□□□□ -0.8
DEPDC4-201ENST00000299185 MICALL2Q8IY33 904 aa10.08□□□□□ -0.8
DEPDC4-201ENST00000299185 CDK11AQ9UQ88 783 aaPredicted RBP10.08□□□□□ -0.8
DEPDC4-201ENST00000299185 CCNB3Q8WWL7 1395 aa10.08□□□□□ -0.8
DEPDC4-201ENST00000299185 SAMD9LQ8IVG5 1584 aa10.08□□□□□ -0.8
DEPDC4-201ENST00000299185 MYOM3Q5VTT5 1437 aa10.07□□□□□ -0.8
DEPDC4-201ENST00000299185 ITSN2Q9NZM3 1697 aa10.07□□□□□ -0.8
DEPDC4-201ENST00000299185 KDM4FA0A1W2PPD8 638 aa10.07□□□□□ -0.8
DEPDC4-201ENST00000299185 SOX12O15370 315 aa10.07□□□□□ -0.8
DEPDC4-201ENST00000299185 CD109Q6YHK3 1445 aa10.07□□□□□ -0.8
DEPDC4-201ENST00000299185 GPR153Q6NV75 609 aa10.06□□□□□ -0.8
DEPDC4-201ENST00000299185 TMEM92Q6UXU6 159 aa10.06□□□□□ -0.8
DEPDC4-201ENST00000299185 FGD6Q6ZV73 1430 aa10.06□□□□□ -0.8
DEPDC4-201ENST00000299185 ZNF644Q9H582 1327 aaPredicted RBP10.06□□□□□ -0.8
DEPDC4-201ENST00000299185 CAMSAP2Q08AD1 1489 aa10.05□□□□□ -0.8
DEPDC4-201ENST00000299185 PTPN23Q9H3S7 1636 aa10.05□□□□□ -0.8
DEPDC4-201ENST00000299185 SYCP2Q9BX26 1530 aa10.05□□□□□ -0.8
DEPDC4-201ENST00000299185 ABCC1P33527 1531 aa10.04□□□□□ -0.8
DEPDC4-201ENST00000299185 ARHGEF12Q9NZN5 1544 aa10.04□□□□□ -0.8
DEPDC4-201ENST00000299185 FBXO41Q8TF61 875 aa10.04□□□□□ -0.8
DEPDC4-201ENST00000299185 ZNF777Q9ULD5 760 aaPredicted RBP10.04□□□□□ -0.8
DEPDC4-201ENST00000299185 FANCAO15360 1455 aa10.04□□□□□ -0.8
DEPDC4-201ENST00000299185 PLCH2O75038 1416 aa10.03□□□□□ -0.8
DEPDC4-201ENST00000299185 FRMPD1Q5SYB0 1578 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms