RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CENPQQ7L2Z9 268 aaPredicted RBP8.2□□□□□ -1.1
VPS35-201ENST00000299138 KIF7Q2M1P5 1343 aa8.2□□□□□ -1.1
VPS35-201ENST00000299138 SAMD9Q5K651 1589 aa8.2□□□□□ -1.1
VPS35-201ENST00000299138 RCAN3Q9UKA8 241 aa8.2□□□□□ -1.1
VPS35-201ENST00000299138 USP47Q96K76 1375 aa8.19□□□□□ -1.1
VPS35-201ENST00000299138 ABCA5Q8WWZ7 1642 aa8.19□□□□□ -1.1
VPS35-201ENST00000299138 MRC2Q9UBG0 1479 aa8.19□□□□□ -1.1
VPS35-201ENST00000299138 MAPK8IP3Q9UPT6 1336 aa8.19□□□□□ -1.1
VPS35-201ENST00000299138 SHANK2Q9UPX8 1470 aa8.19□□□□□ -1.1
VPS35-201ENST00000299138 RRP1P56182 461 aaKnown RBP8.19□□□□□ -1.1
VPS35-201ENST00000299138 NUP160Q12769 1436 aa8.19□□□□□ -1.1
VPS35-201ENST00000299138 GOLGA6L6A8MZA4 724 aa8.18□□□□□ -1.1
VPS35-201ENST00000299138 HSP90AA2PQ14568 343 aaPredicted RBP8.18□□□□□ -1.1
VPS35-201ENST00000299138 TAOK2Q9UL54 1235 aa8.18□□□□□ -1.1
VPS35-201ENST00000299138 NOC3LQ8WTT2 800 aaKnown RBP8.18□□□□□ -1.1
VPS35-201ENST00000299138 TAF7LQ5H9L4 462 aa8.18□□□□□ -1.1
VPS35-201ENST00000299138 PATL2C9JE40 543 aaKnown RBP8.18□□□□□ -1.1
VPS35-201ENST00000299138 GCC2Q8IWJ2 1684 aa8.18□□□□□ -1.1
VPS35-201ENST00000299138 ADGRL2O95490 1459 aa8.18□□□□□ -1.1
VPS35-201ENST00000299138 CFDP1Q9UEE9 299 aaPredicted RBP8.18□□□□□ -1.1
VPS35-201ENST00000299138 RALGAPBQ86X10 1494 aa8.17□□□□□ -1.1
VPS35-201ENST00000299138 SETQ01105 290 aaPredicted RBP8.17□□□□□ -1.1
VPS35-201ENST00000299138 DNAJC5BQ9UF47 199 aa8.17□□□□□ -1.1
VPS35-201ENST00000299138 ZNF777Q9ULD5 760 aaPredicted RBP8.17□□□□□ -1.1
VPS35-201ENST00000299138 CGNL1Q0VF96 1302 aa8.17□□□□□ -1.1
VPS35-201ENST00000299138 DAPK1P53355 1430 aa8.17□□□□□ -1.1
VPS35-201ENST00000299138 TROQ12816 1431 aaPredicted RBP8.17□□□□□ -1.1
VPS35-201ENST00000299138 CARD11Q9BXL7 1154 aa8.17□□□□□ -1.1
VPS35-201ENST00000299138 LRPPRCP42704 1394 aaKnown RBP8.17□□□□□ -1.1
VPS35-201ENST00000299138 B4GALNT3Q6L9W6 998 aa8.16□□□□□ -1.1
VPS35-201ENST00000299138 EPRSP07814 1512 aaKnown RBP8.16□□□□□ -1.1
VPS35-201ENST00000299138 IL27Q8NEV9 243 aa8.16□□□□□ -1.1
VPS35-201ENST00000299138 SPATA31E1Q6ZUB1 1445 aa8.16□□□□□ -1.1
VPS35-201ENST00000299138 PNISRQ8TF01 805 aaKnown RBP8.16□□□□□ -1.1
VPS35-201ENST00000299138 KIAA0586Q9BVV6 1533 aa8.16□□□□□ -1.1
VPS35-201ENST00000299138 PDE4AP27815 886 aa8.16□□□□□ -1.1
VPS35-201ENST00000299138 GSE1Q14687 1217 aa8.15□□□□□ -1.1
VPS35-201ENST00000299138 DRC7Q8IY82 874 aa8.15□□□□□ -1.1
VPS35-201ENST00000299138 RRP7BPQ9NSQ0 103 aa8.15□□□□□ -1.1
VPS35-201ENST00000299138 PIAS4Q8N2W9 510 aaPredicted RBP8.15□□□□□ -1.1
VPS35-201ENST00000299138 TMF1P82094 1093 aa8.14□□□□□ -1.11
VPS35-201ENST00000299138 GOLGA6L1Q8N7Z2 621 aa8.14□□□□□ -1.11
VPS35-201ENST00000299138 BACH2Q9BYV9 841 aa8.14□□□□□ -1.11
VPS35-201ENST00000299138 PLEKHD1A6NEE1 506 aa8.14□□□□□ -1.11
VPS35-201ENST00000299138 FAM161AQ3B820 660 aa8.14□□□□□ -1.11
VPS35-201ENST00000299138 KCNH8Q96L42 1107 aa8.14□□□□□ -1.11
VPS35-201ENST00000299138 WDR43Q15061 677 aaKnown RBP eCLIP8.14□□□□□ -1.11
VPS35-201ENST00000299138 PNNQ9H307 717 aaKnown RBP8.14□□□□□ -1.11
VPS35-201ENST00000299138 CAMSAP2Q08AD1 1489 aa8.14□□□□□ -1.11
VPS35-201ENST00000299138 MSH5O43196 834 aa8.14□□□□□ -1.11
VPS35-201ENST00000299138 IFT140Q96RY7 1462 aa8.14□□□□□ -1.11
VPS35-201ENST00000299138 FAM43AQ8N2R8 423 aa8.13□□□□□ -1.11
VPS35-201ENST00000299138 PKNOX2Q96KN3 472 aa8.13□□□□□ -1.11
VPS35-201ENST00000299138 CTTNBP2Q8WZ74 1663 aa8.13□□□□□ -1.11
VPS35-201ENST00000299138 NPC1L1Q9UHC9 1359 aa8.13□□□□□ -1.11
VPS35-201ENST00000299138 NRDCO43847 1150 aa8.13□□□□□ -1.11
VPS35-201ENST00000299138 ANKRD50Q9ULJ7 1429 aa8.13□□□□□ -1.11
VPS35-201ENST00000299138 URB2Q14146 1524 aaKnown RBP8.13□□□□□ -1.11
VPS35-201ENST00000299138 MEX3CQ5U5Q3 659 aaKnown RBP8.12□□□□□ -1.11
VPS35-201ENST00000299138 CHIC2Q9UKJ5 165 aa8.12□□□□□ -1.11
VPS35-201ENST00000299138 IQGAP2Q13576 1575 aa8.12□□□□□ -1.11
VPS35-201ENST00000299138 GPRASP1Q5JY77 1395 aa8.11□□□□□ -1.11
VPS35-201ENST00000299138 CT47B1P0C2W7 299 aaPredicted RBP8.1□□□□□ -1.11
VPS35-201ENST00000299138 PRM3Q9NNZ6 103 aa8.1□□□□□ -1.11
VPS35-201ENST00000299138 DHX29Q7Z478 1369 aaKnown RBP8.1□□□□□ -1.11
VPS35-201ENST00000299138 ZNF771Q7L3S4 317 aaPredicted RBP8.1□□□□□ -1.11
VPS35-201ENST00000299138 PMFBP1Q8TBY8 1022 aa8.1□□□□□ -1.11
VPS35-201ENST00000299138 KNSTRNQ9Y448 316 aa8.09□□□□□ -1.11
VPS35-201ENST00000299138 ABCC5O15440 1437 aa8.09□□□□□ -1.11
VPS35-201ENST00000299138 PTPRKQ15262 1439 aa8.09□□□□□ -1.11
VPS35-201ENST00000299138 PDE4CQ08493 712 aa8.09□□□□□ -1.11
VPS35-201ENST00000299138 PDE3AQ14432 1141 aa8.09□□□□□ -1.11
VPS35-201ENST00000299138 PARD3Q8TEW0 1356 aa8.09□□□□□ -1.11
VPS35-201ENST00000299138 DNMT1P26358 1616 aaKnown RBP8.09□□□□□ -1.11
VPS35-201ENST00000299138 PKD2Q13563 968 aa8.09□□□□□ -1.11
VPS35-201ENST00000299138 MYH16Q9H6N6 1097 aa8.09□□□□□ -1.11
VPS35-201ENST00000299138 FBXO3Q9UK99 471 aa8.09□□□□□ -1.11
VPS35-201ENST00000299138 CCDC141Q6ZP82 1450 aa8.08□□□□□ -1.12
VPS35-201ENST00000299138 NUP155O75694 1391 aa8.08□□□□□ -1.12
VPS35-201ENST00000299138 KIF14Q15058 1648 aa8.08□□□□□ -1.12
VPS35-201ENST00000299138 KDM5DQ9BY66 1539 aa8.08□□□□□ -1.12
VPS35-201ENST00000299138 GOLGA2Q08379 1002 aa8.08□□□□□ -1.12
VPS35-201ENST00000299138 SKOR2Q2VWA4 1001 aaPredicted RBP8.08□□□□□ -1.12
VPS35-201ENST00000299138 KDM5BQ9UGL1 1544 aa8.08□□□□□ -1.12
VPS35-201ENST00000299138 MBD5Q9P267 1494 aa8.08□□□□□ -1.12
VPS35-201ENST00000299138 SPRYD3Q8NCJ5 442 aa8.07□□□□□ -1.12
VPS35-201ENST00000299138 E9PSI1 815 aa8.07□□□□□ -1.12
VPS35-201ENST00000299138 CLSTN1O94985 981 aa8.07□□□□□ -1.12
VPS35-201ENST00000299138 ITSN2Q9NZM3 1697 aa8.07□□□□□ -1.12
VPS35-201ENST00000299138 HSP90AB1P08238 724 aaKnown RBP8.06□□□□□ -1.12
VPS35-201ENST00000299138 PRKCSHP14314 528 aaPredicted RBP8.06□□□□□ -1.12
VPS35-201ENST00000299138 NPM1P06748 294 aaKnown RBP eCLIP8.06□□□□□ -1.12
VPS35-201ENST00000299138 EIF2AK4Q9P2K8 1649 aaKnown RBP8.06□□□□□ -1.12
VPS35-201ENST00000299138 WDR62O43379 1518 aa8.06□□□□□ -1.12
VPS35-201ENST00000299138 DDX11L8A8MPP1 907 aa8.05□□□□□ -1.12
VPS35-201ENST00000299138 JPH4Q96JJ6 628 aa8.05□□□□□ -1.12
VPS35-201ENST00000299138 MAP7D2Q96T17 732 aa8.05□□□□□ -1.12
VPS35-201ENST00000299138 HIRIP3Q9BW71 556 aaPredicted RBP8.05□□□□□ -1.12
VPS35-201ENST00000299138 KLHL34Q8N239 644 aa8.05□□□□□ -1.12
VPS35-201ENST00000299138 GZF1Q9H116 711 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms