RNA–Protein interactions for RNA: ENST00000296302.11

PBRM1-201, Transcript of polybromo 1, humanhuman

TSL 1 (best) BASIC

Gene PBRM1, Length 5,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBRM1-201ENST00000296302 GPATCH3Q96I76 525 aa13.67□□□□□ -0.22
PBRM1-201ENST00000296302 TOP2AP11388 1531 aaKnown RBP13.67□□□□□ -0.22
PBRM1-201ENST00000296302 CCDC34Q96HJ3 373 aa13.67□□□□□ -0.22
PBRM1-201ENST00000296302 LMOD3Q0VAK6 560 aa13.67□□□□□ -0.22
PBRM1-201ENST00000296302 ZKSCAN2Q63HK3 967 aa13.66□□□□□ -0.22
PBRM1-201ENST00000296302 ATP6V1DQ9Y5K8 247 aa13.66□□□□□ -0.22
PBRM1-201ENST00000296302 NFKBIBQ15653 356 aa13.66□□□□□ -0.22
PBRM1-201ENST00000296302 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.66□□□□□ -0.22
PBRM1-201ENST00000296302 PANK3Q9H999 370 aa13.65□□□□□ -0.22
PBRM1-201ENST00000296302 USP47Q96K76 1375 aa13.65□□□□□ -0.22
PBRM1-201ENST00000296302 TERF2IPQ9NYB0 399 aa13.65□□□□□ -0.22
PBRM1-201ENST00000296302 KIF16BQ96L93 1317 aa13.65□□□□□ -0.22
PBRM1-201ENST00000296302 SPAG9O60271 1321 aaKnown RBP13.65□□□□□ -0.23
PBRM1-201ENST00000296302 LMOD2Q6P5Q4 547 aa13.64□□□□□ -0.23
PBRM1-201ENST00000296302 CARMIL2Q6F5E8 1435 aa13.64□□□□□ -0.23
PBRM1-201ENST00000296302 CCDC18Q5T9S5 1454 aa13.64□□□□□ -0.23
PBRM1-201ENST00000296302 RSPH4AQ5TD94 716 aa13.64□□□□□ -0.23
PBRM1-201ENST00000296302 FAM43AQ8N2R8 423 aa13.64□□□□□ -0.23
PBRM1-201ENST00000296302 FHOD3Q2V2M9 1422 aa13.64□□□□□ -0.23
PBRM1-201ENST00000296302 KIF3AQ9Y496 699 aa13.63□□□□□ -0.23
PBRM1-201ENST00000296302 TULP1O00294 542 aaPredicted RBP13.63□□□□□ -0.23
PBRM1-201ENST00000296302 STK26Q9P289 416 aa13.63□□□□□ -0.23
PBRM1-201ENST00000296302 COG6Q9Y2V7 657 aa13.63□□□□□ -0.23
PBRM1-201ENST00000296302 SOX12O15370 315 aa13.63□□□□□ -0.23
PBRM1-201ENST00000296302 NOL8Q76FK4 1167 aaKnown RBP13.63□□□□□ -0.23
PBRM1-201ENST00000296302 AAMPQ13685 434 aa13.61□□□□□ -0.23
PBRM1-201ENST00000296302 SMARCA2P51531 1590 aa13.61□□□□□ -0.23
PBRM1-201ENST00000296302 ANKRD45Q5TZF3 282 aa13.61□□□□□ -0.23
PBRM1-201ENST00000296302 HSP90B1P14625 803 aaKnown RBP13.61□□□□□ -0.23
PBRM1-201ENST00000296302 MRE11P49959 708 aa13.61□□□□□ -0.23
PBRM1-201ENST00000296302 CNTLNQ9NXG0 1405 aa13.6□□□□□ -0.23
PBRM1-201ENST00000296302 CCDC7Q96M83 1385 aa13.6□□□□□ -0.23
PBRM1-201ENST00000296302 FOXD4L5Q5VV16 416 aaPredicted RBP13.6□□□□□ -0.23
PBRM1-201ENST00000296302 FOXD4L4Q8WXT5 416 aaPredicted RBP13.6□□□□□ -0.23
PBRM1-201ENST00000296302 EFCAB2Q5VUJ9 269 aa13.6□□□□□ -0.23
PBRM1-201ENST00000296302 FAM13BQ9NYF5 915 aa13.6□□□□□ -0.23
PBRM1-201ENST00000296302 DDX19BQ9UMR2 479 aa13.6□□□□□ -0.23
PBRM1-201ENST00000296302 REC8O95072 547 aa13.58□□□□□ -0.23
PBRM1-201ENST00000296302 SLC4A10Q6U841 1118 aa13.58□□□□□ -0.23
PBRM1-201ENST00000296302 MAP7D2Q96T17 732 aa13.58□□□□□ -0.23
PBRM1-201ENST00000296302 RRP7AQ9Y3A4 280 aaKnown RBP13.58□□□□□ -0.23
PBRM1-201ENST00000296302 CCDC144AA2RUR9 1427 aa13.58□□□□□ -0.24
PBRM1-201ENST00000296302 GOLGA6L19H0YKK7 550 aa13.58□□□□□ -0.24
PBRM1-201ENST00000296302 NUCB2P80303 420 aa13.58□□□□□ -0.24
PBRM1-201ENST00000296302 MTERF4Q7Z6M4 381 aaKnown RBP13.58□□□□□ -0.24
PBRM1-201ENST00000296302 BCL2L13Q9BXK5 485 aa13.58□□□□□ -0.24
PBRM1-201ENST00000296302 WIZO95785 1651 aa13.57□□□□□ -0.24
PBRM1-201ENST00000296302 GGT6Q6P531 493 aa13.57□□□□□ -0.24
PBRM1-201ENST00000296302 CHMP4CQ96CF2 233 aa13.57□□□□□ -0.24
PBRM1-201ENST00000296302 APAF1O14727 1248 aa13.57□□□□□ -0.24
PBRM1-201ENST00000296302 ZNF771Q7L3S4 317 aaPredicted RBP13.57□□□□□ -0.24
PBRM1-201ENST00000296302 NOC3LQ8WTT2 800 aaKnown RBP13.57□□□□□ -0.24
PBRM1-201ENST00000296302 TPM3P06753 285 aa13.57□□□□□ -0.24
PBRM1-201ENST00000296302 BECN2A8MW95 431 aa13.55□□□□□ -0.24
PBRM1-201ENST00000296302 SF3A1Q15459 793 aaKnown RBP13.55□□□□□ -0.24
PBRM1-201ENST00000296302 KIF7Q2M1P5 1343 aa13.55□□□□□ -0.24
PBRM1-201ENST00000296302 GPS2Q13227 327 aa13.55□□□□□ -0.24
PBRM1-201ENST00000296302 DZIP1LQ8IYY4 767 aaKnown RBP13.55□□□□□ -0.24
PBRM1-201ENST00000296302 RUSC2Q8N2Y8 1516 aa13.54□□□□□ -0.24
PBRM1-201ENST00000296302 C22orf23Q9BZE7 217 aa13.54□□□□□ -0.24
PBRM1-201ENST00000296302 TPM2P07951 284 aa13.53□□□□□ -0.24
PBRM1-201ENST00000296302 H3BQV1 296 aa13.53□□□□□ -0.24
PBRM1-201ENST00000296302 NPHP1O15259 732 aa13.53□□□□□ -0.24
PBRM1-201ENST00000296302 HNRNPMP52272 730 aaKnown RBP eCLIP13.53□□□□□ -0.24
PBRM1-201ENST00000296302 IFFO2Q5TF58 517 aa13.53□□□□□ -0.24
PBRM1-201ENST00000296302 BRD4O60885 1362 aaPredicted RBP13.53□□□□□ -0.24
PBRM1-201ENST00000296302 UACAQ9BZF9 1416 aa13.52□□□□□ -0.24
PBRM1-201ENST00000296302 TDRD9Q8NDG6 1382 aaKnown RBP13.52□□□□□ -0.24
PBRM1-201ENST00000296302 RILPL2Q969X0 211 aa13.52□□□□□ -0.24
PBRM1-201ENST00000296302 GORABQ5T7V8 394 aa13.52□□□□□ -0.25
PBRM1-201ENST00000296302 SETQ01105 290 aaPredicted RBP13.51□□□□□ -0.25
PBRM1-201ENST00000296302 ERCC6Q03468 1493 aa13.51□□□□□ -0.25
PBRM1-201ENST00000296302 BRPF3Q9ULD4 1205 aa13.51□□□□□ -0.25
PBRM1-201ENST00000296302 NASPP49321 788 aaPredicted RBP13.5□□□□□ -0.25
PBRM1-201ENST00000296302 TEX35Q5T0J7 233 aa13.5□□□□□ -0.25
PBRM1-201ENST00000296302 FAM184AQ8NB25 1140 aa13.5□□□□□ -0.25
PBRM1-201ENST00000296302 A0A0U1RQG5 324 aaPredicted RBP13.5□□□□□ -0.25
PBRM1-201ENST00000296302 KIF3BO15066 747 aa13.5□□□□□ -0.25
PBRM1-201ENST00000296302 CCDC39Q9UFE4 941 aa13.5□□□□□ -0.25
PBRM1-201ENST00000296302 API5Q9BZZ5 524 aaKnown RBP13.5□□□□□ -0.25
PBRM1-201ENST00000296302 TRAK2O60296 914 aa13.49□□□□□ -0.25
PBRM1-201ENST00000296302 WASHC2AQ641Q2 1341 aa13.49□□□□□ -0.25
PBRM1-201ENST00000296302 FOXD4L6Q3SYB3 417 aaPredicted RBP13.49□□□□□ -0.25
PBRM1-201ENST00000296302 FOXD4L3Q6VB84 417 aaPredicted RBP13.49□□□□□ -0.25
PBRM1-201ENST00000296302 DIAPH3Q9NSV4 1193 aa13.49□□□□□ -0.25
PBRM1-201ENST00000296302 RUFY2Q8WXA3 655 aa13.49□□□□□ -0.25
PBRM1-201ENST00000296302 INTS3Q68E01 1043 aaKnown RBP13.48□□□□□ -0.25
PBRM1-201ENST00000296302 ZNF592Q92610 1267 aa13.48□□□□□ -0.25
PBRM1-201ENST00000296302 PAK3O75914 559 aaPredicted RBP13.48□□□□□ -0.25
PBRM1-201ENST00000296302 IL27Q8NEV9 243 aa13.48□□□□□ -0.25
PBRM1-201ENST00000296302 ISY1Q9ULR0 285 aaKnown RBP13.48□□□□□ -0.25
PBRM1-201ENST00000296302 ROCK1Q13464 1354 aa13.47□□□□□ -0.25
PBRM1-201ENST00000296302 MCTP1Q6DN14 999 aa13.47□□□□□ -0.25
PBRM1-201ENST00000296302 RUNDC1Q96C34 613 aa13.47□□□□□ -0.25
PBRM1-201ENST00000296302 TRAK1Q9UPV9 953 aa13.47□□□□□ -0.25
PBRM1-201ENST00000296302 R3HCC1Q9Y3T6 440 aaKnown RBP13.47□□□□□ -0.25
PBRM1-201ENST00000296302 MIA2Q96PC5 1412 aa13.47□□□□□ -0.25
PBRM1-201ENST00000296302 FRAT2O75474 233 aaPredicted RBP13.47□□□□□ -0.25
PBRM1-201ENST00000296302 ELL2O00472 640 aaPredicted RBP13.47□□□□□ -0.25
PBRM1-201ENST00000296302 ZKSCAN1P17029 563 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms