RNA–Protein interactions for RNA: ENST00000295522.3

CLDN1-201, Transcript of claudin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLDN1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN1-201ENST00000295522 PKD2Q13563 968 aa13□□□□□ -0.33
CLDN1-201ENST00000295522 ANP32BQ92688 251 aaKnown RBP13□□□□□ -0.33
CLDN1-201ENST00000295522 GRPEL1Q9HAV7 217 aa13□□□□□ -0.33
CLDN1-201ENST00000295522 RGL3Q3MIN7 710 aa12.99□□□□□ -0.33
CLDN1-201ENST00000295522 FOXD4L1Q9NU39 408 aa12.99□□□□□ -0.33
CLDN1-201ENST00000295522 CASKIN1Q8WXD9 1431 aa12.99□□□□□ -0.33
CLDN1-201ENST00000295522 MFAP1P55081 439 aaKnown RBP12.98□□□□□ -0.33
CLDN1-201ENST00000295522 ADAMTS8Q9UP79 889 aa12.98□□□□□ -0.33
CLDN1-201ENST00000295522 PRDM2Q13029 1718 aa12.98□□□□□ -0.33
CLDN1-201ENST00000295522 BCAR3O75815 825 aa12.98□□□□□ -0.33
CLDN1-201ENST00000295522 TBC1D2Q9BYX2 928 aa12.98□□□□□ -0.33
CLDN1-201ENST00000295522 COG6Q9Y2V7 657 aa12.98□□□□□ -0.33
CLDN1-201ENST00000295522 LRPPRCP42704 1394 aaKnown RBP12.98□□□□□ -0.33
CLDN1-201ENST00000295522 PRDM10Q9NQV6 1147 aa12.97□□□□□ -0.33
CLDN1-201ENST00000295522 FYCO1Q9BQS8 1478 aa12.97□□□□□ -0.33
CLDN1-201ENST00000295522 ERBB4Q15303 1308 aa12.97□□□□□ -0.33
CLDN1-201ENST00000295522 ZNF644Q9H582 1327 aaPredicted RBP12.97□□□□□ -0.33
CLDN1-201ENST00000295522 MSNP26038 577 aaKnown RBP12.97□□□□□ -0.33
CLDN1-201ENST00000295522 ROCK2O75116 1388 aaKnown RBP12.97□□□□□ -0.33
CLDN1-201ENST00000295522 ANKRD30BQ9BXX2 1392 aa12.97□□□□□ -0.33
CLDN1-201ENST00000295522 SPATA31E1Q6ZUB1 1445 aa12.97□□□□□ -0.33
CLDN1-201ENST00000295522 IGHDP01880 384 aa12.97□□□□□ -0.33
CLDN1-201ENST00000295522 GOLGA2Q08379 1002 aa12.97□□□□□ -0.33
CLDN1-201ENST00000295522 PDCL3Q9H2J4 239 aa12.97□□□□□ -0.33
CLDN1-201ENST00000295522 POLA1P09884 1462 aaPredicted RBP12.97□□□□□ -0.33
CLDN1-201ENST00000295522 NEUROD2Q15784 382 aa12.96□□□□□ -0.33
CLDN1-201ENST00000295522 ZHX1Q9UKY1 873 aaPredicted RBP12.95□□□□□ -0.34
CLDN1-201ENST00000295522 R3HCC1Q9Y3T6 440 aaKnown RBP12.95□□□□□ -0.34
CLDN1-201ENST00000295522 NCLP19338 710 aaKnown RBP12.95□□□□□ -0.34
CLDN1-201ENST00000295522 PANK1Q8TE04 598 aa12.95□□□□□ -0.34
CLDN1-201ENST00000295522 TPM2P07951 284 aa12.94□□□□□ -0.34
CLDN1-201ENST00000295522 RPRD2Q5VT52 1461 aaKnown RBP12.94□□□□□ -0.34
CLDN1-201ENST00000295522 CFAP43Q8NDM7 1665 aa12.93□□□□□ -0.34
CLDN1-201ENST00000295522 AMER1Q5JTC6 1135 aaPredicted RBP12.93□□□□□ -0.34
CLDN1-201ENST00000295522 CLUAP1Q96AJ1 413 aa12.93□□□□□ -0.34
CLDN1-201ENST00000295522 PANK3Q9H999 370 aa12.93□□□□□ -0.34
CLDN1-201ENST00000295522 MIA2Q96PC5 1412 aa12.93□□□□□ -0.34
CLDN1-201ENST00000295522 DENND4BO75064 1496 aaPredicted RBP12.93□□□□□ -0.34
CLDN1-201ENST00000295522 DNMBPQ6XZF7 1577 aa12.93□□□□□ -0.34
CLDN1-201ENST00000295522 HSCBQ8IWL3 235 aa12.92□□□□□ -0.34
CLDN1-201ENST00000295522 CHMP5Q9NZZ3 219 aa12.92□□□□□ -0.34
CLDN1-201ENST00000295522 BCL2L13Q9BXK5 485 aa12.92□□□□□ -0.34
CLDN1-201ENST00000295522 USP19O94966 1318 aa12.91□□□□□ -0.34
CLDN1-201ENST00000295522 KDM6BO15054 1643 aa12.91□□□□□ -0.34
CLDN1-201ENST00000295522 MRC2Q9UBG0 1479 aa12.9□□□□□ -0.34
CLDN1-201ENST00000295522 DUSP27Q5VZP5 1158 aa12.9□□□□□ -0.34
CLDN1-201ENST00000295522 MAPK8IP3Q9UPT6 1336 aa12.9□□□□□ -0.34
CLDN1-201ENST00000295522 FSD2A1L4K1 749 aa12.9□□□□□ -0.34
CLDN1-201ENST00000295522 HSP90AB1P08238 724 aaKnown RBP12.89□□□□□ -0.35
CLDN1-201ENST00000295522 ANTXR1Q9H6X2 564 aa12.89□□□□□ -0.35
CLDN1-201ENST00000295522 TEX14Q8IWB6 1497 aa12.88□□□□□ -0.35
CLDN1-201ENST00000295522 DDX11L8A8MPP1 907 aa12.88□□□□□ -0.35
CLDN1-201ENST00000295522 APAF1O14727 1248 aa12.88□□□□□ -0.35
CLDN1-201ENST00000295522 CFDP1Q9UEE9 299 aaPredicted RBP12.87□□□□□ -0.35
CLDN1-201ENST00000295522 KNSTRNQ9Y448 316 aa12.87□□□□□ -0.35
CLDN1-201ENST00000295522 C22orf23Q9BZE7 217 aa12.86□□□□□ -0.35
CLDN1-201ENST00000295522 NASPP49321 788 aaPredicted RBP12.86□□□□□ -0.35
CLDN1-201ENST00000295522 GAS2L3Q86XJ1 694 aa12.86□□□□□ -0.35
CLDN1-201ENST00000295522 ZNF608Q9ULD9 1512 aaPredicted RBP12.85□□□□□ -0.35
CLDN1-201ENST00000295522 DNTTIP2Q5QJE6 756 aaKnown RBP12.85□□□□□ -0.35
CLDN1-201ENST00000295522 CALD1Q05682 793 aaKnown RBP12.85□□□□□ -0.35
CLDN1-201ENST00000295522 BCORL1Q5H9F3 1711 aa12.85□□□□□ -0.35
CLDN1-201ENST00000295522 TBC1D32Q96NH3 1257 aa12.85□□□□□ -0.35
CLDN1-201ENST00000295522 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLDN1-201ENST00000295522 PDZRN3Q9UPQ7 1066 aa12.85□□□□□ -0.35
CLDN1-201ENST00000295522 XPCQ01831 940 aaPredicted RBP12.84□□□□□ -0.35
CLDN1-201ENST00000295522 PLEKHH1Q9ULM0 1364 aa12.84□□□□□ -0.35
CLDN1-201ENST00000295522 UQCRHLA0A096LP55 91 aa12.83□□□□□ -0.35
CLDN1-201ENST00000295522 UQCRHP07919 91 aa12.83□□□□□ -0.35
CLDN1-201ENST00000295522 AAMPQ13685 434 aa12.83□□□□□ -0.35
CLDN1-201ENST00000295522 NBPF1Q3BBV0 1214 aa12.83□□□□□ -0.35
CLDN1-201ENST00000295522 GBP4Q96PP9 640 aa12.83□□□□□ -0.35
CLDN1-201ENST00000295522 SPINK5Q9NQ38 1064 aaPredicted RBP12.83□□□□□ -0.35
CLDN1-201ENST00000295522 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.83□□□□□ -0.36
CLDN1-201ENST00000295522 DDX49Q9Y6V7 483 aaKnown RBP12.82□□□□□ -0.36
CLDN1-201ENST00000295522 CENPJQ9HC77 1338 aaPredicted RBP12.82□□□□□ -0.36
CLDN1-201ENST00000295522 ZSCAN30Q86W11 494 aa12.82□□□□□ -0.36
CLDN1-201ENST00000295522 CGNL1Q0VF96 1302 aa12.82□□□□□ -0.36
CLDN1-201ENST00000295522 RRP7AQ9Y3A4 280 aaKnown RBP12.82□□□□□ -0.36
CLDN1-201ENST00000295522 GOLGA6L22H0YM25 854 aa12.81□□□□□ -0.36
CLDN1-201ENST00000295522 HECW1Q76N89 1606 aa12.81□□□□□ -0.36
CLDN1-201ENST00000295522 SLFN5Q08AF3 891 aa12.8□□□□□ -0.36
CLDN1-201ENST00000295522 TNPO1Q92973 898 aaKnown RBP12.8□□□□□ -0.36
CLDN1-201ENST00000295522 NUP155O75694 1391 aa12.8□□□□□ -0.36
CLDN1-201ENST00000295522 PARD3Q8TEW0 1356 aa12.8□□□□□ -0.36
CLDN1-201ENST00000295522 TNNT2P45379 298 aaPredicted RBP12.8□□□□□ -0.36
CLDN1-201ENST00000295522 TPRNQ4KMQ1 711 aa12.8□□□□□ -0.36
CLDN1-201ENST00000295522 GAPVD1Q14C86 1478 aa12.79□□□□□ -0.36
CLDN1-201ENST00000295522 PTMAP06454 111 aaKnown RBP12.79□□□□□ -0.36
CLDN1-201ENST00000295522 MPNDQ8N594 471 aa12.79□□□□□ -0.36
CLDN1-201ENST00000295522 TNNQ9UQP3 1299 aa12.79□□□□□ -0.36
CLDN1-201ENST00000295522 SUPT6HQ7KZ85 1726 aaKnown RBP12.79□□□□□ -0.36
CLDN1-201ENST00000295522 ABCA10Q8WWZ4 1543 aa12.79□□□□□ -0.36
CLDN1-201ENST00000295522 PMFBP1Q8TBY8 1022 aa12.79□□□□□ -0.36
CLDN1-201ENST00000295522 PRDM4Q9UKN5 801 aa12.79□□□□□ -0.36
CLDN1-201ENST00000295522 RIPK4P57078 832 aa12.78□□□□□ -0.36
CLDN1-201ENST00000295522 CCDC173Q0VFZ6 552 aa12.78□□□□□ -0.36
CLDN1-201ENST00000295522 ABCA5Q8WWZ7 1642 aa12.78□□□□□ -0.36
CLDN1-201ENST00000295522 CDK13Q14004 1512 aaKnown RBP12.78□□□□□ -0.36
CLDN1-201ENST00000295522 TMF1P82094 1093 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms